Click here to switch to the map view.

The map label for this gene is yrbE [C]

Identifier: 42523258

GI number: 42523258

Start: 1701560

End: 1702384

Strand: Direct

Name: yrbE [C]

Synonym: Bd1768

Alternate gene names: 42523258

Gene position: 1701560-1702384 (Clockwise)

Preceding gene: 42523257

Following gene: 42523259

Centisome position: 44.98

GC content: 51.39

Gene sequence:

>825_bases
ATGACTTCTTTACTGGCGCAAATTGACTCGCTAGGAAGATCAGTAACAAAGAATTTGGAGTACACGGCACGTGTTCTCCT
GATGGTTTACCTTTCTCTGCGCGCAACTATTTTGGACCGCGCTCAGGGCTTCCGCCAGATCGTGGGCGTTATTTCCGCAC
AGATCTATTTCACGGGGTGGCAGGCGCTGCCACTGATTTCGGTTCTGGCTTTGGGAACCGGCTCGATCATTCTGCTTCAA
TCCTTGTCCAATCTGTCACTTTTAGGCGGCACCCAGATGATCGGGAATTTCCTGATCGTCATGATCGTGCGTGAAGCGGG
ACCATTGCTGGTGGCATTGGTGGTGATCGCGCGTTCCGGAACGGCGGTGGCGTCGGAAGTCGGGAACATGCGGGCCAATC
GCGAGATTGAGGCGCTGGAAAGCATGGGGATCAACCCTTTGAGTTTCATCGTCTTTCCGCGGGTGCTGGGGGGGATTATC
AGTGTTCTGGGCCTGGCATTCTATTTCAACTTCATCGCATTGATTGGCGGCTTCCTGGTCACGAAGTTCGTGCAGGATTT
GCCTTTGGCTTTTTATACAGATTCATTGATGCGCGCCTTTGCCAAAGAGGATGTGCTGATCTTCCTGCTGAAGAACGGGT
TCAGTGGGATGATTATTTTTGTGGTGTGCTGCTATCAGGGGCTTTCCGTGAAACGCAGTCCGCATGAGGTTCCCCAGGTC
ACGACCCAGGCCGTGGTGAACAGTATTATATTTGTGGTCGTGTTTAATTTGATTGTGACAGCTTTGTTTTATCTGAATCA
ACTTCGCAGTTTAGGGGTGGTGTGA

Upstream 100 bases:

>100_bases
CGCTGTTTTACTCCTTCTGGGCCTATTAAAACCAGACCTTTGACCAAAACATCTTTTCCAGAATTGATCCGATAAATCCT
TGAGAAATCGAGGGTGAATC

Downstream 100 bases:

>100_bases
TGAAAATCGAAAATCTAAAATTTGAAGGTGTGTCTTTCACTCATGAAGGGCAGGAACCAATTGTTCAGAATGTGGAGTTT
GATTTTCCCATGAATGAAAT

Product: ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MTSLLAQIDSLGRSVTKNLEYTARVLLMVYLSLRATILDRAQGFRQIVGVISAQIYFTGWQALPLISVLALGTGSIILLQ
SLSNLSLLGGTQMIGNFLIVMIVREAGPLLVALVVIARSGTAVASEVGNMRANREIEALESMGINPLSFIVFPRVLGGII
SVLGLAFYFNFIALIGGFLVTKFVQDLPLAFYTDSLMRAFAKEDVLIFLLKNGFSGMIIFVVCCYQGLSVKRSPHEVPQV
TTQAVVNSIIFVVVFNLIVTALFYLNQLRSLGVV

Sequences:

>Translated_274_residues
MTSLLAQIDSLGRSVTKNLEYTARVLLMVYLSLRATILDRAQGFRQIVGVISAQIYFTGWQALPLISVLALGTGSIILLQ
SLSNLSLLGGTQMIGNFLIVMIVREAGPLLVALVVIARSGTAVASEVGNMRANREIEALESMGINPLSFIVFPRVLGGII
SVLGLAFYFNFIALIGGFLVTKFVQDLPLAFYTDSLMRAFAKEDVLIFLLKNGFSGMIIFVVCCYQGLSVKRSPHEVPQV
TTQAVVNSIIFVVVFNLIVTALFYLNQLRSLGVV
>Mature_273_residues
TSLLAQIDSLGRSVTKNLEYTARVLLMVYLSLRATILDRAQGFRQIVGVISAQIYFTGWQALPLISVLALGTGSIILLQS
LSNLSLLGGTQMIGNFLIVMIVREAGPLLVALVVIARSGTAVASEVGNMRANREIEALESMGINPLSFIVFPRVLGGIIS
VLGLAFYFNFIALIGGFLVTKFVQDLPLAFYTDSLMRAFAKEDVLIFLLKNGFSGMIIFVVCCYQGLSVKRSPHEVPQVT
TQAVVNSIIFVVVFNLIVTALFYLNQLRSLGVV

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=264, Percent_Identity=25.7575757575758, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 29786; Mature: 29655

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLLAQIDSLGRSVTKNLEYTARVLLMVYLSLRATILDRAQGFRQIVGVISAQIYFTGW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECH
QALPLISVLALGTGSIILLQSLSNLSLLGGTQMIGNFLIVMIVREAGPLLVALVVIARSG
HHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
TAVASEVGNMRANREIEALESMGINPLSFIVFPRVLGGIISVLGLAFYFNFIALIGGFLV
CHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKFVQDLPLAFYTDSLMRAFAKEDVLIFLLKNGFSGMIIFVVCCYQGLSVKRSPHEVPQV
HHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHH
TTQAVVNSIIFVVVFNLIVTALFYLNQLRSLGVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TSLLAQIDSLGRSVTKNLEYTARVLLMVYLSLRATILDRAQGFRQIVGVISAQIYFTGW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECH
QALPLISVLALGTGSIILLQSLSNLSLLGGTQMIGNFLIVMIVREAGPLLVALVVIARSG
HHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
TAVASEVGNMRANREIEALESMGINPLSFIVFPRVLGGIISVLGLAFYFNFIALIGGFLV
CHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKFVQDLPLAFYTDSLMRAFAKEDVLIFLLKNGFSGMIIFVVCCYQGLSVKRSPHEVPQV
HHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHH
TTQAVVNSIIFVVVFNLIVTALFYLNQLRSLGVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA