| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42523184
Identifier: 42523184
GI number: 42523184
Start: 1623480
End: 1624298
Strand: Direct
Name: 42523184
Synonym: Bd1687
Alternate gene names: NA
Gene position: 1623480-1624298 (Clockwise)
Preceding gene: 42523183
Following gene: 42523185
Centisome position: 42.92
GC content: 36.14
Gene sequence:
>819_bases ATGAATGATAATTGGGGTAAAATAAGTTCCAAAAAATGGATAATAATTGTCGTTTCTTTTTCTGTTGCGCTAGTGGGGTA CGTCTTTGCATTCAGGTATCTGTCTGAAAATGAAACCGAGAGGGTTAGTTTCGCTATCCGATCGGCGGTAGAGGATGAGC GAGATATTATTCTTTTGAATTCTTTTGATATTAAGTTTTTGTCTTCTTCTGCTTCGATAATGTCTGGTGAAATGTTGCGC AGGCAGGTCGGGGAGGTAGTTGGTAACACCGATGAAATGAAACTCCTAAGAGTTGCATTGGCAAATAAGGGTTTGGTTGA TGTGCGCGGATATTATGATCCTTATAAAAGAAGATACAACTTATTTGTCACTCGTTCGAAGGATTCTCAACGTCAAATAG GAGATGAGATCTTTTTGTTGTTAGAGAAACGAGTGAACGTTTTGTTTCAAGATAGGGCCAATATTGAAATTGATACAAAA CTTGCGAAATTACGTGCTCAAGAGAAGAGGTTAGAGAGGGAGAACGTTATTTTGGATGAGTTGGCACGATTTAATAGTAA TCAGCGAGAGCGGCTGGATATTAAAAAGAATATTTTACTTATAAGGTCTGAAATTAAAGAACTTCTTGAATTTAAGGATA GGACGCTGAGTATTCCAATTTTTGATAAAGTTGAATATGTCGGTGGCGTTATAGATTATTATAGGAAAAGTTTTATTTTC TTCTTGTTGTGTTTTTTTGCCTCCTCAGTGATTTGCATAATTTATGTATGTATTCCCATGTCAGAGTTACGTTTGAAGCC TTCAAATATTAAGAGCTAA
Upstream 100 bases:
>100_bases TAGCACTTGGTAAGGCGAAGTAGGTGGACGAGGCATTAGTATCCTTTTTTTTGAGTGGCAGTCTCAACGGATTCGCATAT TTTATTGAAAGGCAGCTTTT
Downstream 100 bases:
>100_bases TGGCATGAGTTCCATATCAATTAGATCTTTAGGAATTAGCTCTTTGACATATCTTTTTTCTGGCGTATTAAGCGCAGTTG TGCCGTTTCTTGCGCTCCCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 272; Mature: 272
Protein sequence:
>272_residues MNDNWGKISSKKWIIIVVSFSVALVGYVFAFRYLSENETERVSFAIRSAVEDERDIILLNSFDIKFLSSSASIMSGEMLR RQVGEVVGNTDEMKLLRVALANKGLVDVRGYYDPYKRRYNLFVTRSKDSQRQIGDEIFLLLEKRVNVLFQDRANIEIDTK LAKLRAQEKRLERENVILDELARFNSNQRERLDIKKNILLIRSEIKELLEFKDRTLSIPIFDKVEYVGGVIDYYRKSFIF FLLCFFASSVICIIYVCIPMSELRLKPSNIKS
Sequences:
>Translated_272_residues MNDNWGKISSKKWIIIVVSFSVALVGYVFAFRYLSENETERVSFAIRSAVEDERDIILLNSFDIKFLSSSASIMSGEMLR RQVGEVVGNTDEMKLLRVALANKGLVDVRGYYDPYKRRYNLFVTRSKDSQRQIGDEIFLLLEKRVNVLFQDRANIEIDTK LAKLRAQEKRLERENVILDELARFNSNQRERLDIKKNILLIRSEIKELLEFKDRTLSIPIFDKVEYVGGVIDYYRKSFIF FLLCFFASSVICIIYVCIPMSELRLKPSNIKS >Mature_272_residues MNDNWGKISSKKWIIIVVSFSVALVGYVFAFRYLSENETERVSFAIRSAVEDERDIILLNSFDIKFLSSSASIMSGEMLR RQVGEVVGNTDEMKLLRVALANKGLVDVRGYYDPYKRRYNLFVTRSKDSQRQIGDEIFLLLEKRVNVLFQDRANIEIDTK LAKLRAQEKRLERENVILDELARFNSNQRERLDIKKNILLIRSEIKELLEFKDRTLSIPIFDKVEYVGGVIDYYRKSFIF FLLCFFASSVICIIYVCIPMSELRLKPSNIKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31759; Mature: 31759
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDNWGKISSKKWIIIVVSFSVALVGYVFAFRYLSENETERVSFAIRSAVEDERDIILLN CCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEE SFDIKFLSSSASIMSGEMLRRQVGEVVGNTDEMKLLRVALANKGLVDVRGYYDPYKRRYN CCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCHHHCEEE LFVTRSKDSQRQIGDEIFLLLEKRVNVLFQDRANIEIDTKLAKLRAQEKRLERENVILDE EEEECCCCHHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHH LARFNSNQRERLDIKKNILLIRSEIKELLEFKDRTLSIPIFDKVEYVGGVIDYYRKSFIF HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHH FLLCFFASSVICIIYVCIPMSELRLKPSNIKS HHHHHHHHHHHHHHHHHCCHHHHEECCCCCCC >Mature Secondary Structure MNDNWGKISSKKWIIIVVSFSVALVGYVFAFRYLSENETERVSFAIRSAVEDERDIILLN CCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEE SFDIKFLSSSASIMSGEMLRRQVGEVVGNTDEMKLLRVALANKGLVDVRGYYDPYKRRYN CCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCHHHCEEE LFVTRSKDSQRQIGDEIFLLLEKRVNVLFQDRANIEIDTKLAKLRAQEKRLERENVILDE EEEECCCCHHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHH LARFNSNQRERLDIKKNILLIRSEIKELLEFKDRTLSIPIFDKVEYVGGVIDYYRKSFIF HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHH FLLCFFASSVICIIYVCIPMSELRLKPSNIKS HHHHHHHHHHHHHHHHHCCHHHHEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA