| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is yfbI [C]
Identifier: 42523169
GI number: 42523169
Start: 1604337
End: 1605800
Strand: Direct
Name: yfbI [C]
Synonym: Bd1669
Alternate gene names: 42523169
Gene position: 1604337-1605800 (Clockwise)
Preceding gene: 42523168
Following gene: 42523171
Centisome position: 42.41
GC content: 48.36
Gene sequence:
>1464_bases ATGCGTGGGACTAGTGTCCTTTGGATTGGACTTTCTTTTGTTTTTTTTGTCTTTGCTAACAGCTGGGAACCTGGGGTTGG ATTAGACACGGCCACCTATGGCGCAATAGCGCGTGGACTGTTAGAGAGCGGGGATTGGTTTCGCCCCAAGCTGGCCCCTG GTATCTTTGATCCCTTTGTAGAGCATCCTTATTTGGGCCTCTGGCTTAATGCGATTTCCATCAAGTTGCTCGGTGCGACT GCCCAAGGAATACATTTCTCAGCATCCATTTTGGGAATTGTAGGGGTGCTGGCATTCTTCTCGGCTATCCGCCGTTTGGT TGATGAAAATACGGCCTTGGTGGCGACGCTGTGTCTTTTGTCTATCAATGTCTATATGAATTTTATGTCCAGCGGTTGGC TCGATATGCCGATGGTTTCCTTTATGCTGGTGGCGTTTTACTTTTCCAGCAGGGTTGTTCCTGATGGCTCGGCCCTGGAT AGTTTGGCGACAGGATTCTTTCTAAGCTTGGCAGTGCTTGTTAAAGGAGCTGCAGCTGTCGGGATATTTCCGGTGGCGAT TTTTTTCCTGATGAGAAGTGGCTGGAAACTCAGAGCGGTGAGCCTCGCGTTGATTGGTTTCTTGGCTCCGCTGGGGCTGT TTACCTGGGGTCACTATTCTTCACAAGGATTTCTTTTCTGGAAGTCGTACTGGTATCGCCAGTTCGTAGTTCATAACGAT ATTCAGGAGGCGGCGACTGATCCGGTGGGGGCTATTTGGTTTATTAGGGATGCATTGACGCATGCTCATGTGGTGGCTCT TCTCTTTATTCCCGGACTGGTGTTGATGTGGAAACGAAACCATCGCTTGCTCGCCTGTGCAGTGGCCCTTGAATTTATTA TCCACTTTGCGGTGTATGGTTTCAGTCATCGCCACAATCGGCAGTATTTGGTTCCCATTTTCCCTTGGATCGCTCTGGGG GCCGCTTTTCTGATTTCTCAAAGAGTCAAAGTGAACACATTAAACTGGAGTCGCGGGCTTTTCTATGTTGGGGTGGCCTA TTTCTTTTTGGTCAGCTTTTTGCCCATCACGGTTCACAATGTGGGGAGTGCTGGAATTTTCGCTCTTTCTGACGATGTGA AGCGGACTCCGATCAAGAATATTTATTTTGAAGCGACGGAAGAAGACCGGGTTCGCGGTGAAATGACCAGTTCGTATGTG GCTTGGTACTGGGGCCGGGTGCCTGTGATGTTTGATTCTGAAGATCTGCCAAAGGTTCTTTCAAATTTGACTCATGAGGA TGGCATCCTGTTATTTCGTAATCTGAAGAATGATTCTGTCTTTCAGATTGCCGAGCACATTTGTGCATGGAACGACCTTT GGATTTTGCTGTCTACGGCAGAGAATTGCAGTACGTTGGAAAGAAAACGTCGAGATCCGATGATCAAAAGAGTCCCCAAG CCCCTGGCATCTAGGACTCTTTGA
Upstream 100 bases:
>100_bases GTGGTGGTGAGCTAAAGCTCGCAATTCTTTTAAAAAACCAACAGTTGTTTGTTTTATTGTGATGATGTAATGTTTGTTTA CATTACAATGAGGCGACAAC
Downstream 100 bases:
>100_bases TAACATGCGGATTGTCACTTAAACAAAAGCTCCTGCGACTCTTTGATATAGCTTAAACCTTCTTCGTGCATTTTCTTGCC GTTGGCAGGACATGGGGATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 487; Mature: 487
Protein sequence:
>487_residues MRGTSVLWIGLSFVFFVFANSWEPGVGLDTATYGAIARGLLESGDWFRPKLAPGIFDPFVEHPYLGLWLNAISIKLLGAT AQGIHFSASILGIVGVLAFFSAIRRLVDENTALVATLCLLSINVYMNFMSSGWLDMPMVSFMLVAFYFSSRVVPDGSALD SLATGFFLSLAVLVKGAAAVGIFPVAIFFLMRSGWKLRAVSLALIGFLAPLGLFTWGHYSSQGFLFWKSYWYRQFVVHND IQEAATDPVGAIWFIRDALTHAHVVALLFIPGLVLMWKRNHRLLACAVALEFIIHFAVYGFSHRHNRQYLVPIFPWIALG AAFLISQRVKVNTLNWSRGLFYVGVAYFFLVSFLPITVHNVGSAGIFALSDDVKRTPIKNIYFEATEEDRVRGEMTSSYV AWYWGRVPVMFDSEDLPKVLSNLTHEDGILLFRNLKNDSVFQIAEHICAWNDLWILLSTAENCSTLERKRRDPMIKRVPK PLASRTL
Sequences:
>Translated_487_residues MRGTSVLWIGLSFVFFVFANSWEPGVGLDTATYGAIARGLLESGDWFRPKLAPGIFDPFVEHPYLGLWLNAISIKLLGAT AQGIHFSASILGIVGVLAFFSAIRRLVDENTALVATLCLLSINVYMNFMSSGWLDMPMVSFMLVAFYFSSRVVPDGSALD SLATGFFLSLAVLVKGAAAVGIFPVAIFFLMRSGWKLRAVSLALIGFLAPLGLFTWGHYSSQGFLFWKSYWYRQFVVHND IQEAATDPVGAIWFIRDALTHAHVVALLFIPGLVLMWKRNHRLLACAVALEFIIHFAVYGFSHRHNRQYLVPIFPWIALG AAFLISQRVKVNTLNWSRGLFYVGVAYFFLVSFLPITVHNVGSAGIFALSDDVKRTPIKNIYFEATEEDRVRGEMTSSYV AWYWGRVPVMFDSEDLPKVLSNLTHEDGILLFRNLKNDSVFQIAEHICAWNDLWILLSTAENCSTLERKRRDPMIKRVPK PLASRTL >Mature_487_residues MRGTSVLWIGLSFVFFVFANSWEPGVGLDTATYGAIARGLLESGDWFRPKLAPGIFDPFVEHPYLGLWLNAISIKLLGAT AQGIHFSASILGIVGVLAFFSAIRRLVDENTALVATLCLLSINVYMNFMSSGWLDMPMVSFMLVAFYFSSRVVPDGSALD SLATGFFLSLAVLVKGAAAVGIFPVAIFFLMRSGWKLRAVSLALIGFLAPLGLFTWGHYSSQGFLFWKSYWYRQFVVHND IQEAATDPVGAIWFIRDALTHAHVVALLFIPGLVLMWKRNHRLLACAVALEFIIHFAVYGFSHRHNRQYLVPIFPWIALG AAFLISQRVKVNTLNWSRGLFYVGVAYFFLVSFLPITVHNVGSAGIFALSDDVKRTPIKNIYFEATEEDRVRGEMTSSYV AWYWGRVPVMFDSEDLPKVLSNLTHEDGILLFRNLKNDSVFQIAEHICAWNDLWILLSTAENCSTLERKRRDPMIKRVPK PLASRTL
Specific function: Unknown
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Integral membrane protein (Potential) [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54691; Mature: 54691
Theoretical pI: Translated: 9.19; Mature: 9.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGTSVLWIGLSFVFFVFANSWEPGVGLDTATYGAIARGLLESGDWFRPKLAPGIFDPFV CCCCEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH EHPYLGLWLNAISIKLLGATAQGIHFSASILGIVGVLAFFSAIRRLVDENTALVATLCLL CCCHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH SINVYMNFMSSGWLDMPMVSFMLVAFYFSSRVVPDGSALDSLATGFFLSLAVLVKGAAAV HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHH GIFPVAIFFLMRSGWKLRAVSLALIGFLAPLGLFTWGHYSSQGFLFWKSYWYRQFVVHND HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCC IQEAATDPVGAIWFIRDALTHAHVVALLFIPGLVLMWKRNHRLLACAVALEFIIHFAVYG HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC FSHRHNRQYLVPIFPWIALGAAFLISQRVKVNTLNWSRGLFYVGVAYFFLVSFLPITVHN CCCCCCCCEEEHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC VGSAGIFALSDDVKRTPIKNIYFEATEEDRVRGEMTSSYVAWYWGRVPVMFDSEDLPKVL CCCCCEEEECCCCHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHH SNLTHEDGILLFRNLKNDSVFQIAEHICAWNDLWILLSTAENCSTLERKRRDPMIKRVPK HHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCHHHHCCC PLASRTL CHHHCCC >Mature Secondary Structure MRGTSVLWIGLSFVFFVFANSWEPGVGLDTATYGAIARGLLESGDWFRPKLAPGIFDPFV CCCCEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH EHPYLGLWLNAISIKLLGATAQGIHFSASILGIVGVLAFFSAIRRLVDENTALVATLCLL CCCHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH SINVYMNFMSSGWLDMPMVSFMLVAFYFSSRVVPDGSALDSLATGFFLSLAVLVKGAAAV HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHH GIFPVAIFFLMRSGWKLRAVSLALIGFLAPLGLFTWGHYSSQGFLFWKSYWYRQFVVHND HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCC IQEAATDPVGAIWFIRDALTHAHVVALLFIPGLVLMWKRNHRLLACAVALEFIIHFAVYG HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC FSHRHNRQYLVPIFPWIALGAAFLISQRVKVNTLNWSRGLFYVGVAYFFLVSFLPITVHN CCCCCCCCEEEHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC VGSAGIFALSDDVKRTPIKNIYFEATEEDRVRGEMTSSYVAWYWGRVPVMFDSEDLPKVL CCCCCEEEECCCCHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHH SNLTHEDGILLFRNLKNDSVFQIAEHICAWNDLWILLSTAENCSTLERKRRDPMIKRVPK HHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCHHHHCCC PLASRTL CHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA