Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

Click here to switch to the map view.

The map label for this gene is yfbI [C]

Identifier: 42523169

GI number: 42523169

Start: 1604337

End: 1605800

Strand: Direct

Name: yfbI [C]

Synonym: Bd1669

Alternate gene names: 42523169

Gene position: 1604337-1605800 (Clockwise)

Preceding gene: 42523168

Following gene: 42523171

Centisome position: 42.41

GC content: 48.36

Gene sequence:

>1464_bases
ATGCGTGGGACTAGTGTCCTTTGGATTGGACTTTCTTTTGTTTTTTTTGTCTTTGCTAACAGCTGGGAACCTGGGGTTGG
ATTAGACACGGCCACCTATGGCGCAATAGCGCGTGGACTGTTAGAGAGCGGGGATTGGTTTCGCCCCAAGCTGGCCCCTG
GTATCTTTGATCCCTTTGTAGAGCATCCTTATTTGGGCCTCTGGCTTAATGCGATTTCCATCAAGTTGCTCGGTGCGACT
GCCCAAGGAATACATTTCTCAGCATCCATTTTGGGAATTGTAGGGGTGCTGGCATTCTTCTCGGCTATCCGCCGTTTGGT
TGATGAAAATACGGCCTTGGTGGCGACGCTGTGTCTTTTGTCTATCAATGTCTATATGAATTTTATGTCCAGCGGTTGGC
TCGATATGCCGATGGTTTCCTTTATGCTGGTGGCGTTTTACTTTTCCAGCAGGGTTGTTCCTGATGGCTCGGCCCTGGAT
AGTTTGGCGACAGGATTCTTTCTAAGCTTGGCAGTGCTTGTTAAAGGAGCTGCAGCTGTCGGGATATTTCCGGTGGCGAT
TTTTTTCCTGATGAGAAGTGGCTGGAAACTCAGAGCGGTGAGCCTCGCGTTGATTGGTTTCTTGGCTCCGCTGGGGCTGT
TTACCTGGGGTCACTATTCTTCACAAGGATTTCTTTTCTGGAAGTCGTACTGGTATCGCCAGTTCGTAGTTCATAACGAT
ATTCAGGAGGCGGCGACTGATCCGGTGGGGGCTATTTGGTTTATTAGGGATGCATTGACGCATGCTCATGTGGTGGCTCT
TCTCTTTATTCCCGGACTGGTGTTGATGTGGAAACGAAACCATCGCTTGCTCGCCTGTGCAGTGGCCCTTGAATTTATTA
TCCACTTTGCGGTGTATGGTTTCAGTCATCGCCACAATCGGCAGTATTTGGTTCCCATTTTCCCTTGGATCGCTCTGGGG
GCCGCTTTTCTGATTTCTCAAAGAGTCAAAGTGAACACATTAAACTGGAGTCGCGGGCTTTTCTATGTTGGGGTGGCCTA
TTTCTTTTTGGTCAGCTTTTTGCCCATCACGGTTCACAATGTGGGGAGTGCTGGAATTTTCGCTCTTTCTGACGATGTGA
AGCGGACTCCGATCAAGAATATTTATTTTGAAGCGACGGAAGAAGACCGGGTTCGCGGTGAAATGACCAGTTCGTATGTG
GCTTGGTACTGGGGCCGGGTGCCTGTGATGTTTGATTCTGAAGATCTGCCAAAGGTTCTTTCAAATTTGACTCATGAGGA
TGGCATCCTGTTATTTCGTAATCTGAAGAATGATTCTGTCTTTCAGATTGCCGAGCACATTTGTGCATGGAACGACCTTT
GGATTTTGCTGTCTACGGCAGAGAATTGCAGTACGTTGGAAAGAAAACGTCGAGATCCGATGATCAAAAGAGTCCCCAAG
CCCCTGGCATCTAGGACTCTTTGA

Upstream 100 bases:

>100_bases
GTGGTGGTGAGCTAAAGCTCGCAATTCTTTTAAAAAACCAACAGTTGTTTGTTTTATTGTGATGATGTAATGTTTGTTTA
CATTACAATGAGGCGACAAC

Downstream 100 bases:

>100_bases
TAACATGCGGATTGTCACTTAAACAAAAGCTCCTGCGACTCTTTGATATAGCTTAAACCTTCTTCGTGCATTTTCTTGCC
GTTGGCAGGACATGGGGATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MRGTSVLWIGLSFVFFVFANSWEPGVGLDTATYGAIARGLLESGDWFRPKLAPGIFDPFVEHPYLGLWLNAISIKLLGAT
AQGIHFSASILGIVGVLAFFSAIRRLVDENTALVATLCLLSINVYMNFMSSGWLDMPMVSFMLVAFYFSSRVVPDGSALD
SLATGFFLSLAVLVKGAAAVGIFPVAIFFLMRSGWKLRAVSLALIGFLAPLGLFTWGHYSSQGFLFWKSYWYRQFVVHND
IQEAATDPVGAIWFIRDALTHAHVVALLFIPGLVLMWKRNHRLLACAVALEFIIHFAVYGFSHRHNRQYLVPIFPWIALG
AAFLISQRVKVNTLNWSRGLFYVGVAYFFLVSFLPITVHNVGSAGIFALSDDVKRTPIKNIYFEATEEDRVRGEMTSSYV
AWYWGRVPVMFDSEDLPKVLSNLTHEDGILLFRNLKNDSVFQIAEHICAWNDLWILLSTAENCSTLERKRRDPMIKRVPK
PLASRTL

Sequences:

>Translated_487_residues
MRGTSVLWIGLSFVFFVFANSWEPGVGLDTATYGAIARGLLESGDWFRPKLAPGIFDPFVEHPYLGLWLNAISIKLLGAT
AQGIHFSASILGIVGVLAFFSAIRRLVDENTALVATLCLLSINVYMNFMSSGWLDMPMVSFMLVAFYFSSRVVPDGSALD
SLATGFFLSLAVLVKGAAAVGIFPVAIFFLMRSGWKLRAVSLALIGFLAPLGLFTWGHYSSQGFLFWKSYWYRQFVVHND
IQEAATDPVGAIWFIRDALTHAHVVALLFIPGLVLMWKRNHRLLACAVALEFIIHFAVYGFSHRHNRQYLVPIFPWIALG
AAFLISQRVKVNTLNWSRGLFYVGVAYFFLVSFLPITVHNVGSAGIFALSDDVKRTPIKNIYFEATEEDRVRGEMTSSYV
AWYWGRVPVMFDSEDLPKVLSNLTHEDGILLFRNLKNDSVFQIAEHICAWNDLWILLSTAENCSTLERKRRDPMIKRVPK
PLASRTL
>Mature_487_residues
MRGTSVLWIGLSFVFFVFANSWEPGVGLDTATYGAIARGLLESGDWFRPKLAPGIFDPFVEHPYLGLWLNAISIKLLGAT
AQGIHFSASILGIVGVLAFFSAIRRLVDENTALVATLCLLSINVYMNFMSSGWLDMPMVSFMLVAFYFSSRVVPDGSALD
SLATGFFLSLAVLVKGAAAVGIFPVAIFFLMRSGWKLRAVSLALIGFLAPLGLFTWGHYSSQGFLFWKSYWYRQFVVHND
IQEAATDPVGAIWFIRDALTHAHVVALLFIPGLVLMWKRNHRLLACAVALEFIIHFAVYGFSHRHNRQYLVPIFPWIALG
AAFLISQRVKVNTLNWSRGLFYVGVAYFFLVSFLPITVHNVGSAGIFALSDDVKRTPIKNIYFEATEEDRVRGEMTSSYV
AWYWGRVPVMFDSEDLPKVLSNLTHEDGILLFRNLKNDSVFQIAEHICAWNDLWILLSTAENCSTLERKRRDPMIKRVPK
PLASRTL

Specific function: Unknown

COG id: COG1807

COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54691; Mature: 54691

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHCCC
>Mature Secondary Structure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CHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA