| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42523168
Identifier: 42523168
GI number: 42523168
Start: 1603166
End: 1604215
Strand: Direct
Name: 42523168
Synonym: Bd1668
Alternate gene names: NA
Gene position: 1603166-1604215 (Clockwise)
Preceding gene: 42523167
Following gene: 42523169
Centisome position: 42.38
GC content: 51.05
Gene sequence:
>1050_bases GTGGGGCGTATGAAAAGTAATACTTTGAAAATGATTCTTTTCCTTGCGGCTTTCATCCTCGGACTAATGGCGCTGGTGGC GGGTTTTAACTTTGCTGTGGACCCGATGTGCTACTATCGCTGTGGCGTTATTGATACCAACAGACAAAGTCAGAACGTCT ATTATCAGGCAGCCCAGATTGTCGGGGCCAATCCTGAAGCCCAGATTGTGATTTTGGGCTCTTCCCGGGGGGAAACGACC TCCGCATTGTGGGTGGAAGAAGTCACCGGGCTAAAAACGATCAATCTTTCTAAGGGCGGCGCAGGGTTGCTGTTGAAAGT GGCTTTGTTGAGAACCGCTTTGGATCAAAAACTGCCTTTGAAAAAAGTCATCTGGATTGCCGACTATTTCGAACTTGCCG GTGAAGTGACGGACGTAAAGGTTCGTCAGACGCCGGTGCTGCGTGAAAAGCTGTTGGCTGACGTCGAAGGTCTTGATGGG GTGAAGTACTATCTAGAGCACTTGCAAAGTCTGATCAGTCACAACACGTTGGAAGCGGCCATTCATCAGTTGAATCAGAA AAAGTCCGACGGCATGTTTGCGCCCAAAGGCAGCGGCAGTGGCATTGATTATCAAAAGTGCGCGGCGGCTGATTATGCCG GAAAAACCACGGCCGATGTTTTGGCCAAAGAAATTGACGTCAGCTATTCGACTTTCGGTGGCCCGATGAGGGCACCACTA AATCCAAACTTTGTAGAGCTGTTTAAAAAGCAGATCAAAGCCACGGCCGAGCAGGGTGTGGAAGTGCTGATCCTGGTTCC ACCATTCCATCCGGAGTTTGCACGCAGACACGCGAAAGATCACCCCGAGGCTGTGAAGTCTCATCAAGAGTGGTTAGAGA TGATCAGGGCTCTACAGTCCGACAAGGTTCACGTGCAGTCGTACTGGGACGGAGTGCCCGGGGATGATGCCGGACCTTCT TTCTGGGATGATGGATCTCACGCGACGTGCAAGGCGATGATGTTAATGCTGAAGCCGGTGCTTGTTGGAAATGCAGGGAT GGGCAAGTAA
Upstream 100 bases:
>100_bases TAAGCCCACGCTATGGCGAGCGGCTTTGATGGCATTCATGTTCGTGGTGTGTCTGATGTACATGGGTGAGGAATCTCCAT TCCTTTACTTCCAATTCTAG
Downstream 100 bases:
>100_bases GAGCTGGGTGGAGGTCCAGGTGTGGTGGTGAGCTAAAGCTCGCAATTCTTTTAAAAAACCAACAGTTGTTTGTTTTATTG TGATGATGTAATGTTTGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 349; Mature: 348
Protein sequence:
>349_residues MGRMKSNTLKMILFLAAFILGLMALVAGFNFAVDPMCYYRCGVIDTNRQSQNVYYQAAQIVGANPEAQIVILGSSRGETT SALWVEEVTGLKTINLSKGGAGLLLKVALLRTALDQKLPLKKVIWIADYFELAGEVTDVKVRQTPVLREKLLADVEGLDG VKYYLEHLQSLISHNTLEAAIHQLNQKKSDGMFAPKGSGSGIDYQKCAAADYAGKTTADVLAKEIDVSYSTFGGPMRAPL NPNFVELFKKQIKATAEQGVEVLILVPPFHPEFARRHAKDHPEAVKSHQEWLEMIRALQSDKVHVQSYWDGVPGDDAGPS FWDDGSHATCKAMMLMLKPVLVGNAGMGK
Sequences:
>Translated_349_residues MGRMKSNTLKMILFLAAFILGLMALVAGFNFAVDPMCYYRCGVIDTNRQSQNVYYQAAQIVGANPEAQIVILGSSRGETT SALWVEEVTGLKTINLSKGGAGLLLKVALLRTALDQKLPLKKVIWIADYFELAGEVTDVKVRQTPVLREKLLADVEGLDG VKYYLEHLQSLISHNTLEAAIHQLNQKKSDGMFAPKGSGSGIDYQKCAAADYAGKTTADVLAKEIDVSYSTFGGPMRAPL NPNFVELFKKQIKATAEQGVEVLILVPPFHPEFARRHAKDHPEAVKSHQEWLEMIRALQSDKVHVQSYWDGVPGDDAGPS FWDDGSHATCKAMMLMLKPVLVGNAGMGK >Mature_348_residues GRMKSNTLKMILFLAAFILGLMALVAGFNFAVDPMCYYRCGVIDTNRQSQNVYYQAAQIVGANPEAQIVILGSSRGETTS ALWVEEVTGLKTINLSKGGAGLLLKVALLRTALDQKLPLKKVIWIADYFELAGEVTDVKVRQTPVLREKLLADVEGLDGV KYYLEHLQSLISHNTLEAAIHQLNQKKSDGMFAPKGSGSGIDYQKCAAADYAGKTTADVLAKEIDVSYSTFGGPMRAPLN PNFVELFKKQIKATAEQGVEVLILVPPFHPEFARRHAKDHPEAVKSHQEWLEMIRALQSDKVHVQSYWDGVPGDDAGPSF WDDGSHATCKAMMLMLKPVLVGNAGMGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38239; Mature: 38107
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRMKSNTLKMILFLAAFILGLMALVAGFNFAVDPMCYYRCGVIDTNRQSQNVYYQAAQI CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEECCCCCCHHHHHHHHH VGANPEAQIVILGSSRGETTSALWVEEVTGLKTINLSKGGAGLLLKVALLRTALDQKLPL CCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCH KKVIWIADYFELAGEVTDVKVRQTPVLREKLLADVEGLDGVKYYLEHLQSLISHNTLEAA HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH IHQLNQKKSDGMFAPKGSGSGIDYQKCAAADYAGKTTADVLAKEIDVSYSTFGGPMRAPL HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCHHHCCCCCCCCC NPNFVELFKKQIKATAEQGVEVLILVPPFHPEFARRHAKDHPEAVKSHQEWLEMIRALQS CCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC DKVHVQSYWDGVPGDDAGPSFWDDGSHATCKAMMLMLKPVLVGNAGMGK CCEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure GRMKSNTLKMILFLAAFILGLMALVAGFNFAVDPMCYYRCGVIDTNRQSQNVYYQAAQI CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEECCCCCCHHHHHHHHH VGANPEAQIVILGSSRGETTSALWVEEVTGLKTINLSKGGAGLLLKVALLRTALDQKLPL CCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCH KKVIWIADYFELAGEVTDVKVRQTPVLREKLLADVEGLDGVKYYLEHLQSLISHNTLEAA HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH IHQLNQKKSDGMFAPKGSGSGIDYQKCAAADYAGKTTADVLAKEIDVSYSTFGGPMRAPL HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCHHHCCCCCCCCC NPNFVELFKKQIKATAEQGVEVLILVPPFHPEFARRHAKDHPEAVKSHQEWLEMIRALQS CCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC DKVHVQSYWDGVPGDDAGPSFWDDGSHATCKAMMLMLKPVLVGNAGMGK CCEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA