Click here to switch to the map view.

The map label for this gene is rimP

Identifier: 42523052

GI number: 42523052

Start: 1469828

End: 1470352

Strand: Direct

Name: rimP

Synonym: Bd1545

Alternate gene names: 42523052

Gene position: 1469828-1470352 (Clockwise)

Preceding gene: 42523051

Following gene: 42523053

Centisome position: 38.85

GC content: 48.0

Gene sequence:

>525_bases
ATGTCAGAGTCTCCATCTTGGATGGCAAAAGTAGAAAAGATCGCCAACGACGTCGCGGCCGCGCAGGGCTGTGTGCTTTA
CGATATTGAATTCGTTGGTTTGGGCAAGGGGCGCACGCTTCGTCTTTTCATCGACAGAGAAGAAGAAGGCGCAATCAGCA
TTGAGGATTGCACCAACGTGTCCCGCGGTTTGAGCGAAATTCTGGATGCAGATGAAGAGATGATTCCAGGTGGCGAATAC
AATCTGGAGGTTTCAACTCCGGGTCTGGATCGTCATCTTAAAAAACCATGGCACTTCAAAAAGGCGATTGGCAAAAAGGT
TTACATCAAAACTACCAAGGCGCTGGAGTCCGTGGGAGTGGAAGACAAAAAATGGAAGAACGCCAAAACCGTCGAAGAGG
TTCTTGAATCCGCCGACGAGCAGGGTGTTCGCTTTGTTGTGAAGGACGTGGAGATCAAAATCCCGTACGCGATGATCGAC
AGGGCAAAATTGGTTTTTGAATATACTAAAGGTCAGAAAAAGTAA

Upstream 100 bases:

>100_bases
CCGGGCAGTTCCCACATGTCGACCCAAAACGTGCGACGAGGTAGCTGAGACAGGTTCTTAGGGGCTTGTTTGAGCTTATT
TTATTTTAGGATTGAACGAA

Downstream 100 bases:

>100_bases
CGAGAGAGGAAAATCATGGCTGAAAATGTGTTTTCAGATCTTTCCAAGGTGATTGATCAAGTCGGAAAAGACAAAGGTAT
CGACAAACAGGTTGTTATCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MSESPSWMAKVEKIANDVAAAQGCVLYDIEFVGLGKGRTLRLFIDREEEGAISIEDCTNVSRGLSEILDADEEMIPGGEY
NLEVSTPGLDRHLKKPWHFKKAIGKKVYIKTTKALESVGVEDKKWKNAKTVEEVLESADEQGVRFVVKDVEIKIPYAMID
RAKLVFEYTKGQKK

Sequences:

>Translated_174_residues
MSESPSWMAKVEKIANDVAAAQGCVLYDIEFVGLGKGRTLRLFIDREEEGAISIEDCTNVSRGLSEILDADEEMIPGGEY
NLEVSTPGLDRHLKKPWHFKKAIGKKVYIKTTKALESVGVEDKKWKNAKTVEEVLESADEQGVRFVVKDVEIKIPYAMID
RAKLVFEYTKGQKK
>Mature_173_residues
SESPSWMAKVEKIANDVAAAQGCVLYDIEFVGLGKGRTLRLFIDREEEGAISIEDCTNVSRGLSEILDADEEMIPGGEYN
LEVSTPGLDRHLKKPWHFKKAIGKKVYIKTTKALESVGVEDKKWKNAKTVEEVLESADEQGVRFVVKDVEIKIPYAMIDR
AKLVFEYTKGQKK

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=148, Percent_Identity=31.0810810810811, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_BDEBA (Q6MMS8)

Other databases:

- EMBL:   BX842650
- RefSeq:   NP_968432.1
- ProteinModelPortal:   Q6MMS8
- SMR:   Q6MMS8
- GeneID:   2735492
- GenomeReviews:   BX842601_GR
- KEGG:   bba:Bd1545
- NMPDR:   fig|264462.1.peg.1402
- HOGENOM:   HBG668072
- OMA:   LEWITER
- PhylomeDB:   Q6MMS8
- BioCyc:   BBAC264462:BD1545-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 19553; Mature: 19421

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESPSWMAKVEKIANDVAAAQGCVLYDIEFVGLGKGRTLRLFIDREEEGAISIEDCTNV
CCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCEEEEEEECCCCCCEEHHHHHHH
SRGLSEILDADEEMIPGGEYNLEVSTPGLDRHLKKPWHFKKAIGKKVYIKTTKALESVGV
HHHHHHHHCCCHHCCCCCCEEEEEECCCHHHHHCCCCHHHHHHCCEEEEEEHHHHHHCCC
EDKKWKNAKTVEEVLESADEQGVRFVVKDVEIKIPYAMIDRAKLVFEYTKGQKK
CCCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEECCHHHHHHHHHEEEECCCCCC
>Mature Secondary Structure 
SESPSWMAKVEKIANDVAAAQGCVLYDIEFVGLGKGRTLRLFIDREEEGAISIEDCTNV
CCCHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCEEEEEEECCCCCCEEHHHHHHH
SRGLSEILDADEEMIPGGEYNLEVSTPGLDRHLKKPWHFKKAIGKKVYIKTTKALESVGV
HHHHHHHHCCCHHCCCCCCEEEEEECCCHHHHHCCCCHHHHHHCCEEEEEEHHHHHHCCC
EDKKWKNAKTVEEVLESADEQGVRFVVKDVEIKIPYAMIDRAKLVFEYTKGQKK
CCCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEECCHHHHHHHHHEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA