| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is 42522976
Identifier: 42522976
GI number: 42522976
Start: 1384618
End: 1385265
Strand: Direct
Name: 42522976
Synonym: Bd1463
Alternate gene names: NA
Gene position: 1384618-1385265 (Clockwise)
Preceding gene: 42522972
Following gene: 42522977
Centisome position: 36.6
GC content: 49.38
Gene sequence:
>648_bases TTGATTGCGTCGCGCAGTCACTATTTCTGTGATGACTTCCTGCTAATTTTATACTCAACTGGGGTCGTGGACGCAATATT TAAAGCTTTTCGCATCACTCTGATTCTGTCGCTGTTCCTCTCGGGATGTGCCTATCGCCTGGGCAGCGGGACGCGCAGTA TTCCTGGCGGCTATAAGCAGATTTCTGTGCCCATTTTCAAAAATAAAACACAGGAAACCGGGATCGAAGTGGCGTTCACA AACACACTGATTCAGGAGTTCCAGCGCTCCCGAGTTGCCCGAATTGTGGACAATTCTTTGTCGGAAGTGGCAGTGATCGG GCAGATTGATTCTGTTCAGTATCTGCCGGGCGCCAAACGTGTGGCCGGAGACTCTTCCGCGCCTTATTTGCCTAATGGAA CTGTCGTTGCGTCAGAGTATCGTATCTTGCTGAATGTGACGGTGAAAGTCGTGCGTCAGGCGGATGGGACTGAACTTTGG AGTGGGTCCTTCAGTGGAGAGAGAACATACGCAGCACCTCAGGTAACGCTGGCCGGTGTTAACTCCATAAATCCGCTTTA CAATCTTTCTGCGCGAAGGCAGAACATTGACCTCATGGCTTATGACATTATGTCCGAAGCTCATGATCGTATTACCGAAA ATTTCTAA
Upstream 100 bases:
>100_bases GAATCATCGGCAGTGCCAGCGCTTTGCGCACCTCAGGATGGATATTGACGGGGCCCGGAGCCAGCAAACTGTAATCGTCT TGAGTTGCCATATTTCTTCC
Downstream 100 bases:
>100_bases AAGGATATTCAACTCGTGGCACTCATCGATGCGCAGAAATTCTATCGCGATCTTGAAAAAGGTCAGACTGCGCCGATGTA TTTCCTTTTCGGGGAAGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 215; Mature: 215
Protein sequence:
>215_residues MIASRSHYFCDDFLLILYSTGVVDAIFKAFRITLILSLFLSGCAYRLGSGTRSIPGGYKQISVPIFKNKTQETGIEVAFT NTLIQEFQRSRVARIVDNSLSEVAVIGQIDSVQYLPGAKRVAGDSSAPYLPNGTVVASEYRILLNVTVKVVRQADGTELW SGSFSGERTYAAPQVTLAGVNSINPLYNLSARRQNIDLMAYDIMSEAHDRITENF
Sequences:
>Translated_215_residues MIASRSHYFCDDFLLILYSTGVVDAIFKAFRITLILSLFLSGCAYRLGSGTRSIPGGYKQISVPIFKNKTQETGIEVAFT NTLIQEFQRSRVARIVDNSLSEVAVIGQIDSVQYLPGAKRVAGDSSAPYLPNGTVVASEYRILLNVTVKVVRQADGTELW SGSFSGERTYAAPQVTLAGVNSINPLYNLSARRQNIDLMAYDIMSEAHDRITENF >Mature_215_residues MIASRSHYFCDDFLLILYSTGVVDAIFKAFRITLILSLFLSGCAYRLGSGTRSIPGGYKQISVPIFKNKTQETGIEVAFT NTLIQEFQRSRVARIVDNSLSEVAVIGQIDSVQYLPGAKRVAGDSSAPYLPNGTVVASEYRILLNVTVKVVRQADGTELW SGSFSGERTYAAPQVTLAGVNSINPLYNLSARRQNIDLMAYDIMSEAHDRITENF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23674; Mature: 23674
Theoretical pI: Translated: 8.17; Mature: 8.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIASRSHYFCDDFLLILYSTGVVDAIFKAFRITLILSLFLSGCAYRLGSGTRSIPGGYKQ CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE ISVPIFKNKTQETGIEVAFTNTLIQEFQRSRVARIVDNSLSEVAVIGQIDSVQYLPGAKR EEEEHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCEEECCCCCC VAGDSSAPYLPNGTVVASEYRILLNVTVKVVRQADGTELWSGSFSGERTYAAPQVTLAGV CCCCCCCCCCCCCCEEECCCEEEHHHHHHHHHHCCCCEEECCCCCCCEEECCCEEEEECC NSINPLYNLSARRQNIDLMAYDIMSEAHDRITENF CCCCHHHCCCCHHCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MIASRSHYFCDDFLLILYSTGVVDAIFKAFRITLILSLFLSGCAYRLGSGTRSIPGGYKQ CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE ISVPIFKNKTQETGIEVAFTNTLIQEFQRSRVARIVDNSLSEVAVIGQIDSVQYLPGAKR EEEEHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCEEECCCCCC VAGDSSAPYLPNGTVVASEYRILLNVTVKVVRQADGTELWSGSFSGERTYAAPQVTLAGV CCCCCCCCCCCCCCEEECCCEEEHHHHHHHHHHCCCCEEECCCCCCCEEECCCEEEEECC NSINPLYNLSARRQNIDLMAYDIMSEAHDRITENF CCCCHHHCCCCHHCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA