| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is pvcA
Identifier: 42522967
GI number: 42522967
Start: 1375393
End: 1376430
Strand: Direct
Name: pvcA
Synonym: Bd1454
Alternate gene names: NA
Gene position: 1375393-1376430 (Clockwise)
Preceding gene: 42522965
Following gene: 42522968
Centisome position: 36.36
GC content: 51.54
Gene sequence:
>1038_bases ATGAAACCTGCAGCCCTTGAACTAATTTCAATTCAGAGTTCTGAAAGCTTAAAATTACGGTCCCCAATGGTCGACCCGGC AACCGAGGTGGCGACAAGAATGCTGGCTCAGGTGATGGATTATCGCCGGGTTCCTCATGCCGGTGACCTGTGTGGCAATT CCGAATGTCAAACCTGCGCATCCTTTCATCTGCCGAAGATCATCTCGGCTGTTCGCAGAAATGAGCCTGTGACTTTTGTT TTGCCGGCCTTTCCTGGCAAGTCCCCGAACCCGGAAAAGGTTCTGGGGGCGTTACCAGACTATGCCGAGCAGCTGGCATT GCAGTTCCTGGGTAACCTTGGTCAGCAAGTCAGACAGTACTATTCACCGGGGATCAAAATCATTCTGTGCTCGGACGGCC GGGTGTTCAGTGACCTTGTGGGCATGAAAGAAAGCAATGTCACGGCCTACCAGTCTGGATTGTCCGGGCTTATTGGTGAA TTGCAGCTGTCAGACATTGAAACTTTCAATATGGATGACTTTTACGGCGAACTTAGTTTCAACCAAATGCGTGATGAACT GATGAAACGCTATGGAAGCTCGCTGGATTTCTTAAAGCACAAAGTCCGTAACGGGATGGCAGAGCTTGCCACCGCAGAAG AGCAGGGCGCTCATCGCATGTACTGCGGAATCACCAGATTCCTGTTTGAAGATTCTCTGCATGCAGGACAGACGAAAAGC CGCTCGGCGATTCAGAAAGAATCCCGCCTGAAAGCCTACGAAGTCATTCGCAGAAGCAATGCCTGGAGTGAGCTGATTGC AGAAAGATTTCCGGACGCTGTCCGCTTGTCCATTCACCCGCAGACCTGCGGTTCTGCAAAGCTTGGCATTCGCCTGGTGG GGAATGAATCCTGGATGACCCCGTGGCATGGCGTCGCTGTTGAAACGGCAAAGGGCTTTGTCCTGCTAAAAAAATCCGAG GCCGAGACCTTGGGAGCAGAATTGATTTACTCATCCGGTGGGCAGCCAAGCCGCTACAAACTAAGAGGTGAACTATGA
Upstream 100 bases:
>100_bases CATTAAAGACATAAATAGTTTTTATCACAATGAAATAAACTAGTCATTTTATTTATACGTGAAAACTCGTTAGTTTCCGC AGCAGGAGGAAACGGAGAGT
Downstream 100 bases:
>100_bases ACTTTCAAGTGACTCATCTAAAGCCTTTCGGAGCGATTGTAGAACCCAAGGCCCAGGGGGCCAGTGTGAAAGACCTGGAT CTGAAAGCCTTGCATCAGCT
Product: pyoverdine biosynthesis protein PvcA
Products: NA
Alternate protein names: Pyoverdine Biosynthesis Protein PvcA; Pyoverdine Chromophore Biosynthetic Protein PvcA; Pyoverdine Biosynthesis; Siderophore Biosynthesis Protein; Cytochrome P; PvcA Protein; Pyoverdine/Dityrosine Biosynthesis Protein; Siderophore Biosynthesis-Related Protein; Clavaminate Synthase-Like Protein; Siderophore Biosynthesis Protein PvcA-Like; Pyoverdine Biosynthesis Protein PvcA-Like Protein
Number of amino acids: Translated: 345; Mature: 345
Protein sequence:
>345_residues MKPAALELISIQSSESLKLRSPMVDPATEVATRMLAQVMDYRRVPHAGDLCGNSECQTCASFHLPKIISAVRRNEPVTFV LPAFPGKSPNPEKVLGALPDYAEQLALQFLGNLGQQVRQYYSPGIKIILCSDGRVFSDLVGMKESNVTAYQSGLSGLIGE LQLSDIETFNMDDFYGELSFNQMRDELMKRYGSSLDFLKHKVRNGMAELATAEEQGAHRMYCGITRFLFEDSLHAGQTKS RSAIQKESRLKAYEVIRRSNAWSELIAERFPDAVRLSIHPQTCGSAKLGIRLVGNESWMTPWHGVAVETAKGFVLLKKSE AETLGAELIYSSGGQPSRYKLRGEL
Sequences:
>Translated_345_residues MKPAALELISIQSSESLKLRSPMVDPATEVATRMLAQVMDYRRVPHAGDLCGNSECQTCASFHLPKIISAVRRNEPVTFV LPAFPGKSPNPEKVLGALPDYAEQLALQFLGNLGQQVRQYYSPGIKIILCSDGRVFSDLVGMKESNVTAYQSGLSGLIGE LQLSDIETFNMDDFYGELSFNQMRDELMKRYGSSLDFLKHKVRNGMAELATAEEQGAHRMYCGITRFLFEDSLHAGQTKS RSAIQKESRLKAYEVIRRSNAWSELIAERFPDAVRLSIHPQTCGSAKLGIRLVGNESWMTPWHGVAVETAKGFVLLKKSE AETLGAELIYSSGGQPSRYKLRGEL >Mature_345_residues MKPAALELISIQSSESLKLRSPMVDPATEVATRMLAQVMDYRRVPHAGDLCGNSECQTCASFHLPKIISAVRRNEPVTFV LPAFPGKSPNPEKVLGALPDYAEQLALQFLGNLGQQVRQYYSPGIKIILCSDGRVFSDLVGMKESNVTAYQSGLSGLIGE LQLSDIETFNMDDFYGELSFNQMRDELMKRYGSSLDFLKHKVRNGMAELATAEEQGAHRMYCGITRFLFEDSLHAGQTKS RSAIQKESRLKAYEVIRRSNAWSELIAERFPDAVRLSIHPQTCGSAKLGIRLVGNESWMTPWHGVAVETAKGFVLLKKSE AETLGAELIYSSGGQPSRYKLRGEL
Specific function: Unknown
COG id: COG3207
COG function: function code Q; Pyoverdine/dityrosine biosynthesis protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6320611, Length=287, Percent_Identity=28.9198606271777, Blast_Score=114, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38274; Mature: 38274
Theoretical pI: Translated: 7.84; Mature: 7.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPAALELISIQSSESLKLRSPMVDPATEVATRMLAQVMDYRRVPHAGDLCGNSECQTCA CCCHHEEEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH SFHLPKIISAVRRNEPVTFVLPAFPGKSPNPEKVLGALPDYAEQLALQFLGNLGQQVRQY HHCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH YSPGIKIILCSDGRVFSDLVGMKESNVTAYQSGLSGLIGELQLSDIETFNMDDFYGELSF HCCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCH NQMRDELMKRYGSSLDFLKHKVRNGMAELATAEEQGAHRMYCGITRFLFEDSLHAGQTKS HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHH RSAIQKESRLKAYEVIRRSNAWSELIAERFPDAVRLSIHPQTCGSAKLGIRLVGNESWMT HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEECCCCCCC PWHGVAVETAKGFVLLKKSEAETLGAELIYSSGGQPSRYKLRGEL CCCCEEEECCCCEEEEECCCHHHHHHHHHCCCCCCCCEEEECCCC >Mature Secondary Structure MKPAALELISIQSSESLKLRSPMVDPATEVATRMLAQVMDYRRVPHAGDLCGNSECQTCA CCCHHEEEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH SFHLPKIISAVRRNEPVTFVLPAFPGKSPNPEKVLGALPDYAEQLALQFLGNLGQQVRQY HHCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH YSPGIKIILCSDGRVFSDLVGMKESNVTAYQSGLSGLIGELQLSDIETFNMDDFYGELSF HCCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCH NQMRDELMKRYGSSLDFLKHKVRNGMAELATAEEQGAHRMYCGITRFLFEDSLHAGQTKS HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHH RSAIQKESRLKAYEVIRRSNAWSELIAERFPDAVRLSIHPQTCGSAKLGIRLVGNESWMT HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEECCCCCCC PWHGVAVETAKGFVLLKKSEAETLGAELIYSSGGQPSRYKLRGEL CCCCEEEECCCCEEEEECCCHHHHHHHHHCCCCCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA