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The map label for this gene is ydiF [H]

Identifier: 42522931

GI number: 42522931

Start: 1336269

End: 1337900

Strand: Direct

Name: ydiF [H]

Synonym: Bd1414

Alternate gene names: 42522931

Gene position: 1336269-1337900 (Clockwise)

Preceding gene: 42522927

Following gene: 42522932

Centisome position: 35.32

GC content: 51.78

Gene sequence:

>1632_bases
ATGATTCATTTATCGAACATCACCAAGCAGCAGGGTAACAAAGTCCTCTATCGCAACGGATCTTTCCAGATCAATGCCGG
AGAGAAAATCGGTCTGGTCGGCCCCAACGGCGCCGGTAAAACCACCATCTTCCGCATCATCATGGGCGAAGAGGGCATCG
ACGGCGGCACTATTTCCAAATCAGATCGCACTGTGATCGGCTATTTCTCCCAGAACATCGAAGAGATGAAAGGCAAGTCC
GCTCTTGAGGAAGTGAAGTCCGCTGTGGGTAACATCGGCGATATGCAAGTGCGCATGCAGGAATGTGAAGCCAAGCTGGC
GGATCCGGATCTGGATCCGGATGAGATGATGAAGATCCTGGAGGTCTACGGTGAACTGCAGGGTGAATTTGAGCGCCTGG
GTGGTTATGACCTGGAATCCCGCGCCGCGGAAATCCTGACCGGTCTTGGTATCGGCCCGGATGATTATCACCGTCCCAGC
GAAAGCTTCTCGGGCGGTTGGAAAATGCGTATTGCTCTGGCAAAAATCCTGGCTTTGAATCCAGAAGTTCTGCTGATGGA
TGAGCCGACGAATCACTTGGACGTGGAATCCATCGTCTGGCTTGAAGAGTGGCTGGTGAATTTCAAAGGCGCCATCCTGA
TGACAAGTCACGATCGTGACTTCATGAACCGCCTGGTTGGCAAGATCGTCGAGATCGCCAATAAAACCATCACGGTCTAT
GGTGGCAACTATGACTTCTACGAAAAAGAGCGCGACATCCGCAAAGAACAGCTGATCGCCGCAGCCAAACGCCAGGAAGA
CATGCTGGCCAAGGAAGAGGAGTTTATTGCCCGCTTTGCGGCCCGTGCCTCCCACGCAGCGCAAGTTCAGTCCCGTGTGA
AGAAACTTGAAAAAATCGACCGTATTGAAATTCCGGATGAGGAAGCTGAAATCAAGTTTGAATGGCCGGTGCCTCCGCGT
GGCGGGGACGAGGTTGTGAAACTAGAAGGCCTTTCCAAAATCTGGAAACGTGATGACGGCAAAGAAAAACTGGTTTTCTC
TGGAGCAAATGCATTGGTGAAACGCCTGGACCGTATTGCGGTTGTGGGTGTGAACGGCGCGGGTAAATCCACGCTGTTGA
AAATCATCGCGGGTCACGCCGATGCCACCGAAGGCAAAATGACTTTGGGTGCTTCCATTAATCTGGGTTATTTCTCTCAG
AACTCTTTGGACGTTCTGGATCCGAAAATGACGATCGTGGACGAAGTTCACTCTCGTATTCCGAATGCTGGCATGGGCAC
GGTGCGAAGCCTGTTGGGTGCTTTCAAATTCTCGGGCGAAGAGGCCGAGAAAAAGATCTCGATCCTGTCGGGTGGTGAAA
AGTCCCGCGTGGTTCTGGCCTGCATTCTGGCGCAGCCGGTGAATTTGCTGATTCTGGATGAACCGACGAATCACTTGGAC
ATCAAGTCCCGCGAATTGCTGCTGGATGCGATCAAGAACTTCCCGGGCACTGTGATGATCGTATCGCACGATCGTCACTT
CCTGCGCGAAGTGACCACAAGAGTATTTGAAGTCGATAAGAACCAGATTCGCATCTACGACGGCGACTACGAATACTATC
AGCTTAAAAAACAACAAGAGCAGATGGCTTAA

Upstream 100 bases:

>100_bases
GGATTTTTTGTGTAGACTCTGAGAGGTGCTAAAAAAGAAGGCAGATTTTCCCGAAATTTTTTGAAGCCTTCACAGTTAAA
AAAAGTTATACGAAGGACCT

Downstream 100 bases:

>100_bases
TGCCTGGACAAACCCTGGATCTGAAAAGTTTCAAAATCCCGCTGGGAAAACTTTCCCCGCTTGAAACTTTTCGCACGCGC
CAGGGGGATGTCCTGTCTTA

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MIHLSNITKQQGNKVLYRNGSFQINAGEKIGLVGPNGAGKTTIFRIIMGEEGIDGGTISKSDRTVIGYFSQNIEEMKGKS
ALEEVKSAVGNIGDMQVRMQECEAKLADPDLDPDEMMKILEVYGELQGEFERLGGYDLESRAAEILTGLGIGPDDYHRPS
ESFSGGWKMRIALAKILALNPEVLLMDEPTNHLDVESIVWLEEWLVNFKGAILMTSHDRDFMNRLVGKIVEIANKTITVY
GGNYDFYEKERDIRKEQLIAAAKRQEDMLAKEEEFIARFAARASHAAQVQSRVKKLEKIDRIEIPDEEAEIKFEWPVPPR
GGDEVVKLEGLSKIWKRDDGKEKLVFSGANALVKRLDRIAVVGVNGAGKSTLLKIIAGHADATEGKMTLGASINLGYFSQ
NSLDVLDPKMTIVDEVHSRIPNAGMGTVRSLLGAFKFSGEEAEKKISILSGGEKSRVVLACILAQPVNLLILDEPTNHLD
IKSRELLLDAIKNFPGTVMIVSHDRHFLREVTTRVFEVDKNQIRIYDGDYEYYQLKKQQEQMA

Sequences:

>Translated_543_residues
MIHLSNITKQQGNKVLYRNGSFQINAGEKIGLVGPNGAGKTTIFRIIMGEEGIDGGTISKSDRTVIGYFSQNIEEMKGKS
ALEEVKSAVGNIGDMQVRMQECEAKLADPDLDPDEMMKILEVYGELQGEFERLGGYDLESRAAEILTGLGIGPDDYHRPS
ESFSGGWKMRIALAKILALNPEVLLMDEPTNHLDVESIVWLEEWLVNFKGAILMTSHDRDFMNRLVGKIVEIANKTITVY
GGNYDFYEKERDIRKEQLIAAAKRQEDMLAKEEEFIARFAARASHAAQVQSRVKKLEKIDRIEIPDEEAEIKFEWPVPPR
GGDEVVKLEGLSKIWKRDDGKEKLVFSGANALVKRLDRIAVVGVNGAGKSTLLKIIAGHADATEGKMTLGASINLGYFSQ
NSLDVLDPKMTIVDEVHSRIPNAGMGTVRSLLGAFKFSGEEAEKKISILSGGEKSRVVLACILAQPVNLLILDEPTNHLD
IKSRELLLDAIKNFPGTVMIVSHDRHFLREVTTRVFEVDKNQIRIYDGDYEYYQLKKQQEQMA
>Mature_543_residues
MIHLSNITKQQGNKVLYRNGSFQINAGEKIGLVGPNGAGKTTIFRIIMGEEGIDGGTISKSDRTVIGYFSQNIEEMKGKS
ALEEVKSAVGNIGDMQVRMQECEAKLADPDLDPDEMMKILEVYGELQGEFERLGGYDLESRAAEILTGLGIGPDDYHRPS
ESFSGGWKMRIALAKILALNPEVLLMDEPTNHLDVESIVWLEEWLVNFKGAILMTSHDRDFMNRLVGKIVEIANKTITVY
GGNYDFYEKERDIRKEQLIAAAKRQEDMLAKEEEFIARFAARASHAAQVQSRVKKLEKIDRIEIPDEEAEIKFEWPVPPR
GGDEVVKLEGLSKIWKRDDGKEKLVFSGANALVKRLDRIAVVGVNGAGKSTLLKIIAGHADATEGKMTLGASINLGYFSQ
NSLDVLDPKMTIVDEVHSRIPNAGMGTVRSLLGAFKFSGEEAEKKISILSGGEKSRVVLACILAQPVNLLILDEPTNHLD
IKSRELLLDAIKNFPGTVMIVSHDRHFLREVTTRVFEVDKNQIRIYDGDYEYYQLKKQQEQMA

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=548, Percent_Identity=31.9343065693431, Blast_Score=273, Evalue=3e-73,
Organism=Homo sapiens, GI10947137, Length=544, Percent_Identity=31.6176470588235, Blast_Score=245, Evalue=6e-65,
Organism=Homo sapiens, GI27881506, Length=544, Percent_Identity=31.6176470588235, Blast_Score=245, Evalue=8e-65,
Organism=Homo sapiens, GI69354671, Length=574, Percent_Identity=29.0940766550523, Blast_Score=209, Evalue=6e-54,
Organism=Homo sapiens, GI10947135, Length=574, Percent_Identity=29.0940766550523, Blast_Score=208, Evalue=8e-54,
Organism=Escherichia coli, GI1789751, Length=546, Percent_Identity=35.3479853479854, Blast_Score=347, Evalue=1e-96,
Organism=Escherichia coli, GI1787041, Length=538, Percent_Identity=32.5278810408922, Blast_Score=287, Evalue=1e-78,
Organism=Escherichia coli, GI2367384, Length=534, Percent_Identity=32.0224719101124, Blast_Score=254, Evalue=8e-69,
Organism=Escherichia coli, GI1787182, Length=537, Percent_Identity=34.0782122905028, Blast_Score=248, Evalue=1e-66,
Organism=Escherichia coli, GI48994943, Length=531, Percent_Identity=24.2937853107345, Blast_Score=86, Evalue=9e-18,
Organism=Escherichia coli, GI145693107, Length=252, Percent_Identity=27.7777777777778, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788165, Length=171, Percent_Identity=32.1637426900585, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI87081791, Length=168, Percent_Identity=31.547619047619, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1786872, Length=263, Percent_Identity=23.574144486692, Blast_Score=62, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17553372, Length=543, Percent_Identity=33.1491712707182, Blast_Score=260, Evalue=1e-69,
Organism=Caenorhabditis elegans, GI17559834, Length=551, Percent_Identity=30.4900181488203, Blast_Score=244, Evalue=6e-65,
Organism=Caenorhabditis elegans, GI17555318, Length=531, Percent_Identity=32.5800376647834, Blast_Score=242, Evalue=3e-64,
Organism=Saccharomyces cerevisiae, GI6321121, Length=550, Percent_Identity=31.6363636363636, Blast_Score=265, Evalue=2e-71,
Organism=Saccharomyces cerevisiae, GI6320874, Length=545, Percent_Identity=31.9266055045872, Blast_Score=256, Evalue=6e-69,
Organism=Saccharomyces cerevisiae, GI6325030, Length=394, Percent_Identity=25.1269035532995, Blast_Score=114, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6324314, Length=394, Percent_Identity=25.6345177664975, Blast_Score=108, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6323278, Length=392, Percent_Identity=24.4897959183673, Blast_Score=107, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24666836, Length=540, Percent_Identity=34.4444444444444, Blast_Score=288, Evalue=9e-78,
Organism=Drosophila melanogaster, GI24641342, Length=548, Percent_Identity=31.2043795620438, Blast_Score=248, Evalue=9e-66,
Organism=Drosophila melanogaster, GI24642252, Length=522, Percent_Identity=29.6934865900383, Blast_Score=236, Evalue=4e-62,
Organism=Drosophila melanogaster, GI18859989, Length=522, Percent_Identity=29.6934865900383, Blast_Score=236, Evalue=4e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 60585; Mature: 60585

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHLSNITKQQGNKVLYRNGSFQINAGEKIGLVGPNGAGKTTIFRIIMGEEGIDGGTISK
CEECCCCHHHCCCEEEEECCCEEECCCCEEEEECCCCCCCEEEEEEEECCCCCCCCCCCC
SDRTVIGYFSQNIEEMKGKSALEEVKSAVGNIGDMQVRMQECEAKLADPDLDPDEMMKIL
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
EVYGELQGEFERLGGYDLESRAAEILTGLGIGPDDYHRPSESFSGGWKMRIALAKILALN
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
PEVLLMDEPTNHLDVESIVWLEEWLVNFKGAILMTSHDRDFMNRLVGKIVEIANKTITVY
CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEE
GGNYDFYEKERDIRKEQLIAAAKRQEDMLAKEEEFIARFAARASHAAQVQSRVKKLEKID
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RIEIPDEEAEIKFEWPVPPRGGDEVVKLEGLSKIWKRDDGKEKLVFSGANALVKRLDRIA
CCCCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHCCCCCCCEEEEECHHHHHHHHCCEE
VVGVNGAGKSTLLKIIAGHADATEGKMTLGASINLGYFSQNSLDVLDPKMTIVDEVHSRI
EEEECCCCHHHHHHHHHCCCCCCCCCEEECCEEEECEECCCCCCCCCCCHHHHHHHHHHC
PNAGMGTVRSLLGAFKFSGEEAEKKISILSGGEKSRVVLACILAQPVNLLILDEPTNHLD
CCCCHHHHHHHHHHHHCCCHHHHHEEEEECCCCCCCEEEEEEHHCCCEEEEEECCCCCCC
IKSRELLLDAIKNFPGTVMIVSHDRHFLREVTTRVFEVDKNQIRIYDGDYEYYQLKKQQE
CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH
QMA
HCC
>Mature Secondary Structure
MIHLSNITKQQGNKVLYRNGSFQINAGEKIGLVGPNGAGKTTIFRIIMGEEGIDGGTISK
CEECCCCHHHCCCEEEEECCCEEECCCCEEEEECCCCCCCEEEEEEEECCCCCCCCCCCC
SDRTVIGYFSQNIEEMKGKSALEEVKSAVGNIGDMQVRMQECEAKLADPDLDPDEMMKIL
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
EVYGELQGEFERLGGYDLESRAAEILTGLGIGPDDYHRPSESFSGGWKMRIALAKILALN
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
PEVLLMDEPTNHLDVESIVWLEEWLVNFKGAILMTSHDRDFMNRLVGKIVEIANKTITVY
CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEE
GGNYDFYEKERDIRKEQLIAAAKRQEDMLAKEEEFIARFAARASHAAQVQSRVKKLEKID
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RIEIPDEEAEIKFEWPVPPRGGDEVVKLEGLSKIWKRDDGKEKLVFSGANALVKRLDRIA
CCCCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHCCCCCCCEEEEECHHHHHHHHCCEE
VVGVNGAGKSTLLKIIAGHADATEGKMTLGASINLGYFSQNSLDVLDPKMTIVDEVHSRI
EEEECCCCHHHHHHHHHCCCCCCCCCEEECCEEEECEECCCCCCCCCCCHHHHHHHHHHC
PNAGMGTVRSLLGAFKFSGEEAEKKISILSGGEKSRVVLACILAQPVNLLILDEPTNHLD
CCCCHHHHHHHHHHHHCCCHHHHHEEEEECCCCCCCEEEEEEHHCCCEEEEEECCCCCCC
IKSRELLLDAIKNFPGTVMIVSHDRHFLREVTTRVFEVDKNQIRIYDGDYEYYQLKKQQE
CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH
QMA
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]