| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522932
Identifier: 42522932
GI number: 42522932
Start: 1337900
End: 1338700
Strand: Direct
Name: 42522932
Synonym: Bd1415
Alternate gene names: NA
Gene position: 1337900-1338700 (Clockwise)
Preceding gene: 42522931
Following gene: 42522935
Centisome position: 35.37
GC content: 55.81
Gene sequence:
>801_bases ATGCCTGGACAAACCCTGGATCTGAAAAGTTTCAAAATCCCGCTGGGAAAACTTTCCCCGCTTGAAACTTTTCGCACGCG CCAGGGGGATGTCCTGTCTTATCGCCTGTACCCCGCATGGTCAGACAACCTGATTGTCCTGTATCACGGGGTGGGCAGTG ACAGCCGGTACATGTGTGTGCTGGCCACCGCCATGGCCCAGGCCGGACTGGGCACCGTGGTGACCCCGGATCTGCGCGGT CACGGTGCCAGCCTGAATGCGGCCGATCCGCAGTCACAGCATCAATTCGAAATCGATCTTGAAGAGCTTATCATCCACAT CAAAATGACCCGCGCGGTTTCCCGCGTGATGCTGGCCGGGCACTCGTTGGGTGGCGGTTTTGTGTTGCGTGTGGCAGTGT CTGATATTCGCAGGCAATTTGCCAGATTCCTGGCGATCTCGCCGTACCTGCCTCCCAGCCTGAATGTTTTCCGTGAGGAC TTTGGCGGGTGGATTTCACCTGATGGCAACGGTGGTTTTAAAGTTAACATGCCTGTTGAATTTGTCTCTGGCCAGGAAAA GCTGACTTACAGTGCGGCTTATCTGGCCGCCGTGACTCCGTCGAAAAACATCCTGGCGGACCTTCAGAAGTTGCAGCCGC CGGTGCAGGTTGTGGTGGCCGAGCTGGATGAACTTATTATTCCGCAGCGCCAGGTGCAGCTGTTCACTGACGCTGGAGCG AACATCCGCGTGGTGAAGGACTTGAATCACCTCACGATTGTCTCGAAACCGGATGTCTGGCTGCCAGAAATTTCACTTTG A
Upstream 100 bases:
>100_bases TGACCACAAGAGTATTTGAAGTCGATAAGAACCAGATTCGCATCTACGACGGCGACTACGAATACTATCAGCTTAAAAAA CAACAAGAGCAGATGGCTTA
Downstream 100 bases:
>100_bases GTCGTGAAAATTACGATTGATCCCCCAGGTGGGGAATTTACTCTAAACCGCTTTAGCTCTATCAATGTCCTGCCGAAAAG TTATACGAAATAACCAAAAT
Product: putative lysophospholipase
Products: NA
Alternate protein names: Alpha/Beta Hydrolase; Alpha/Beta Hydrolase Superfamily Protein; Alpha/Beta Hydrolase Fold Protein; Lysophospholipase; Alpha/Beta Fold Family Hydrolase
Number of amino acids: Translated: 266; Mature: 265
Protein sequence:
>266_residues MPGQTLDLKSFKIPLGKLSPLETFRTRQGDVLSYRLYPAWSDNLIVLYHGVGSDSRYMCVLATAMAQAGLGTVVTPDLRG HGASLNAADPQSQHQFEIDLEELIIHIKMTRAVSRVMLAGHSLGGGFVLRVAVSDIRRQFARFLAISPYLPPSLNVFRED FGGWISPDGNGGFKVNMPVEFVSGQEKLTYSAAYLAAVTPSKNILADLQKLQPPVQVVVAELDELIIPQRQVQLFTDAGA NIRVVKDLNHLTIVSKPDVWLPEISL
Sequences:
>Translated_266_residues MPGQTLDLKSFKIPLGKLSPLETFRTRQGDVLSYRLYPAWSDNLIVLYHGVGSDSRYMCVLATAMAQAGLGTVVTPDLRG HGASLNAADPQSQHQFEIDLEELIIHIKMTRAVSRVMLAGHSLGGGFVLRVAVSDIRRQFARFLAISPYLPPSLNVFRED FGGWISPDGNGGFKVNMPVEFVSGQEKLTYSAAYLAAVTPSKNILADLQKLQPPVQVVVAELDELIIPQRQVQLFTDAGA NIRVVKDLNHLTIVSKPDVWLPEISL >Mature_265_residues PGQTLDLKSFKIPLGKLSPLETFRTRQGDVLSYRLYPAWSDNLIVLYHGVGSDSRYMCVLATAMAQAGLGTVVTPDLRGH GASLNAADPQSQHQFEIDLEELIIHIKMTRAVSRVMLAGHSLGGGFVLRVAVSDIRRQFARFLAISPYLPPSLNVFREDF GGWISPDGNGGFKVNMPVEFVSGQEKLTYSAAYLAAVTPSKNILADLQKLQPPVQVVVAELDELIIPQRQVQLFTDAGAN IRVVKDLNHLTIVSKPDVWLPEISL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29205; Mature: 29074
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGQTLDLKSFKIPLGKLSPLETFRTRQGDVLSYRLYPAWSDNLIVLYHGVGSDSRYMCV CCCCCCCCCEEECCCCCCCHHHHHHCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCHHH LATAMAQAGLGTVVTPDLRGHGASLNAADPQSQHQFEIDLEELIIHIKMTRAVSRVMLAG HHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHC HSLGGGFVLRVAVSDIRRQFARFLAISPYLPPSLNVFREDFGGWISPDGNGGFKVNMPVE CCCCCCEEEEHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHCCEECCCCCCCEEEECCHH FVSGQEKLTYSAAYLAAVTPSKNILADLQKLQPPVQVVVAELDELIIPQRQVQLFTDAGA EECCCCCEEEEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEEEEECCCC NIRVVKDLNHLTIVSKPDVWLPEISL CEEEEEECCEEEEEECCCCCCCCCCC >Mature Secondary Structure PGQTLDLKSFKIPLGKLSPLETFRTRQGDVLSYRLYPAWSDNLIVLYHGVGSDSRYMCV CCCCCCCCEEECCCCCCCHHHHHHCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCHHH LATAMAQAGLGTVVTPDLRGHGASLNAADPQSQHQFEIDLEELIIHIKMTRAVSRVMLAG HHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHC HSLGGGFVLRVAVSDIRRQFARFLAISPYLPPSLNVFREDFGGWISPDGNGGFKVNMPVE CCCCCCEEEEHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHCCEECCCCCCCEEEECCHH FVSGQEKLTYSAAYLAAVTPSKNILADLQKLQPPVQVVVAELDELIIPQRQVQLFTDAGA EECCCCCEEEEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEEEEECCCC NIRVVKDLNHLTIVSKPDVWLPEISL CEEEEEECCEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA