Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

Click here to switch to the map view.

The map label for this gene is 42522909

Identifier: 42522909

GI number: 42522909

Start: 1316694

End: 1317545

Strand: Direct

Name: 42522909

Synonym: Bd1391

Alternate gene names: NA

Gene position: 1316694-1317545 (Clockwise)

Preceding gene: 42522907

Following gene: 42522911

Centisome position: 34.81

GC content: 51.41

Gene sequence:

>852_bases
GTGTTGAATTCAAAGCTGTTGCTGTCGTCCTTGCTGCTTTTGACCCTTGTTGCCTGTACGAAAAATGAAAAAACAAACAA
TGTCGAACTGACCGGTTCAGAGACCTCGATTATTGGCGGCGAAAAGGCTGATGCCAATAGTCCGGTGACGGCCTCCACGG
TTTCTTTGATTTACAACTATCAGGGCAAGCCTTACTCCATCTGCACAGGCACTTTGATTTCAAAGAATCTGGTTTTGACG
GCCGCTCATTGCCTGGCGGAGCTTCAGGGCGCAGAAATCTTCGTTCATCTGGGGGAGGTTTTGCCGACGGAAGTCGATGA
AACCAAACTCTTGCGAATAGCGGAATTTGAAACTCACAAAGAATATCATCTGGTTTACAATGAACAGGGCTTCCCGGTGA
CGGGCCGCAATGACGTGGCCCTGATCAAGTTATTACTGGATGCTCCGGAAGGTGCAGTGCCGGTGCCGGTTCTGGATGAG
TCCGTAGAGCTGAAAGCAGGAGAGACCTTGCTGCTTGCGGGCTATGGACTGTTGAATGAAATTGATAATCCGATTCCGGC
AACGGGCCTGAACTTGGTGCGAGTGCCGCTGGCAAAATTGTGGGAATCCATTTTGGTGACGGATCAAACGAATGCAAAAG
GCGCTTGTTCGGGTGATTCCGGCGGCCCGGCTTACCTGGAAACTTCCAAAGGCCTTGTTGTTGTGGGCATCACTCGTGGG
CCCCACGATCTGGCGCCGGACTGTCGTCATTTCGGTGAATACACCAATGCTTCCATGTTCAAAACATTCATCTTGGAAGA
GGCGGCTGCCATGGGTGCTGACGCCCCTGTCTTTACGACCGAGCGTCAGTAA

Upstream 100 bases:

>100_bases
ATACTGTCCAAGAATTTGACACAGATCAATTCCTAGGAGTTTTCGCAACTGTTTGATAGATTCCCCAGCGGCGATTCACG
CCGTTGTAAGGGGAGTCCCT

Downstream 100 bases:

>100_bases
ATTGTCCTAAAGATTCGTCTGCAGTGTCAAAAACACACTGCGGACTTCCCCCGGGTACAGATAGATGTGCCCGTATTGAG
TCGGGGATTCCTTCCAGTAT

Product: putative trypsin

Products: NA

Alternate protein names: Serine Protease; Secreted Trypsin-Like Serine Protease; Trypsin-Like Serine Protease Family Protein; Phosphotrypsin; Protease

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MLNSKLLLSSLLLLTLVACTKNEKTNNVELTGSETSIIGGEKADANSPVTASTVSLIYNYQGKPYSICTGTLISKNLVLT
AAHCLAELQGAEIFVHLGEVLPTEVDETKLLRIAEFETHKEYHLVYNEQGFPVTGRNDVALIKLLLDAPEGAVPVPVLDE
SVELKAGETLLLAGYGLLNEIDNPIPATGLNLVRVPLAKLWESILVTDQTNAKGACSGDSGGPAYLETSKGLVVVGITRG
PHDLAPDCRHFGEYTNASMFKTFILEEAAAMGADAPVFTTERQ

Sequences:

>Translated_283_residues
MLNSKLLLSSLLLLTLVACTKNEKTNNVELTGSETSIIGGEKADANSPVTASTVSLIYNYQGKPYSICTGTLISKNLVLT
AAHCLAELQGAEIFVHLGEVLPTEVDETKLLRIAEFETHKEYHLVYNEQGFPVTGRNDVALIKLLLDAPEGAVPVPVLDE
SVELKAGETLLLAGYGLLNEIDNPIPATGLNLVRVPLAKLWESILVTDQTNAKGACSGDSGGPAYLETSKGLVVVGITRG
PHDLAPDCRHFGEYTNASMFKTFILEEAAAMGADAPVFTTERQ
>Mature_283_residues
MLNSKLLLSSLLLLTLVACTKNEKTNNVELTGSETSIIGGEKADANSPVTASTVSLIYNYQGKPYSICTGTLISKNLVLT
AAHCLAELQGAEIFVHLGEVLPTEVDETKLLRIAEFETHKEYHLVYNEQGFPVTGRNDVALIKLLLDAPEGAVPVPVLDE
SVELKAGETLLLAGYGLLNEIDNPIPATGLNLVRVPLAKLWESILVTDQTNAKGACSGDSGGPAYLETSKGLVVVGITRG
PHDLAPDCRHFGEYTNASMFKTFILEEAAAMGADAPVFTTERQ

Specific function: Unknown

COG id: COG5640

COG function: function code O; Secreted trypsin-like serine protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4503137, Length=214, Percent_Identity=30.3738317757009, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI21358103, Length=191, Percent_Identity=29.3193717277487, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24658940, Length=190, Percent_Identity=25.7894736842105, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24663201, Length=192, Percent_Identity=28.6458333333333, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30238; Mature: 30238

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00134 TRYPSIN_HIS ; PS50240 TRYPSIN_DOM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNSKLLLSSLLLLTLVACTKNEKTNNVELTGSETSIIGGEKADANSPVTASTVSLIYNY
CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCCCHHEEEEEEEC
QGKPYSICTGTLISKNLVLTAAHCLAELQGAEIFVHLGEVLPTEVDETKLLRIAEFETHK
CCCEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECHHCCCCCCHHHEEEEEECCCCC
EYHLVYNEQGFPVTGRNDVALIKLLLDAPEGAVPVPVLDESVELKAGETLLLAGYGLLNE
EEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCEEEEECCHHHHH
IDNPIPATGLNLVRVPLAKLWESILVTDQTNAKGACSGDSGGPAYLETSKGLVVVGITRG
CCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEECCCCEEEEEECCC
PHDLAPDCRHFGEYTNASMFKTFILEEAAAMGADAPVFTTERQ
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC
>Mature Secondary Structure
MLNSKLLLSSLLLLTLVACTKNEKTNNVELTGSETSIIGGEKADANSPVTASTVSLIYNY
CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCCCHHEEEEEEEC
QGKPYSICTGTLISKNLVLTAAHCLAELQGAEIFVHLGEVLPTEVDETKLLRIAEFETHK
CCCEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECHHCCCCCCHHHEEEEEECCCCC
EYHLVYNEQGFPVTGRNDVALIKLLLDAPEGAVPVPVLDESVELKAGETLLLAGYGLLNE
EEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCEEEEECCHHHHH
IDNPIPATGLNLVRVPLAKLWESILVTDQTNAKGACSGDSGGPAYLETSKGLVVVGITRG
CCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEECCCCEEEEEECCC
PHDLAPDCRHFGEYTNASMFKTFILEEAAAMGADAPVFTTERQ
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA