| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is 42522911
Identifier: 42522911
GI number: 42522911
Start: 1319913
End: 1321013
Strand: Direct
Name: 42522911
Synonym: Bd1393
Alternate gene names: NA
Gene position: 1319913-1321013 (Clockwise)
Preceding gene: 42522909
Following gene: 42522913
Centisome position: 34.89
GC content: 50.59
Gene sequence:
>1101_bases ATGAATATAAATCAAAGCCTGCTTTGCGAGTTCGTCATCAAGGGTTTGGTCTCTTATAAAAAAGAATTACGCGGGCCTTT CTTGCAGGATTTTCGGCAGCAGTTTGCCAGCCTGAGTCCAGAAGAAGTGGCAGAGGCCTTTATTGATGTCACCTTTCTGG GGTCGGCTCTGACCTTTCTGCAGGGGGAGCAGTGGAACCTGAAAAAGGATCCTGATACCAGCTCCGAAAATTATCTTCGT TTCACCGAACAGACCTTTGCCTCCAATCTTTTGTCTTTGAATTATCTGCAGGAAACCCTGCAAACCTTGAATGCAAAAGA ACTGCGCCAGACGGCCGAGCTCTGTGAAGAGCTGGAGCGTCTGCTGTTGTCCCACGTTCAGTCAGCGAGTCAGGAACAGA AAAACCGCTTTGTGGCCAGAGCCCTGCAGTTGATGGAAAATGTCTTTGCTCATGAAAACACGCTGTCGTTGCAGGGAAAC ATCCAGGCTCGTTCCCTGGCGCTTTCTTTGTATCGCACTTTCGACGGTCTGGATCAGATCTTTGGTTTGAACTATGACGC CGACGTGGGAATGAAAACTGACGTGAACGGCACTGAAAGATTGTATGAAGGGGCGGGCCTTGGTGTGCAGTCTTCGTATT CAACGTTGCTGACGGCTTTGCGCGAAGTGCAGGCGTCACAAGGAACACGCTTCATTGATCTGGGTTCCGGTTATGGACGG GTGGGCCTGGTGGTGGGTGTGCTCAGGCCGGACATTGACTTTATCGGGTACGAGTACGTCAAACACCGCGTGGATATTTC CAACGAATCCACGGCCAAGTTCGGTTTGCAGGATCACGTGCATTTTTTCACGCAGGATCTTTCTGAAAAAGACTTCCGCA TCCCCGATGCCGAGGTCTATTACATGTTTGATCCGTTCAGCAAAGACACCTATCAGCATGTCTTGAATCAATTGGTGGAA GTTTCGCGCCGTCAAAGAATTGTCGTGGTCACCAAGGGCAATGCACGATTGTGGCTGAAGGAAATCGCCGAACGCGAAGG TTGGTTGCCAGGTCAGGAGTTTGACGGCGGCAATCTGTCGCTGTTCCGTTCGCGCGAATAG
Upstream 100 bases:
>100_bases AGGAGGCCGCCCAGGTCAAATTCTTTTTGGAAACAGCGGAGGTCGGGCGTTATTTTCATAAATTCCGCTTATTTCCACGA AGCCATGCTAAGCTTTATAT
Downstream 100 bases:
>100_bases TTACTTTACAAATTTGACCTGGAACTTTTGACCTTTGATGCGGCCGTCACGCAACTTTTGCATGGCGCCGTCCGCGACTT TCGCAGACACCGCCACAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 366; Mature: 366
Protein sequence:
>366_residues MNINQSLLCEFVIKGLVSYKKELRGPFLQDFRQQFASLSPEEVAEAFIDVTFLGSALTFLQGEQWNLKKDPDTSSENYLR FTEQTFASNLLSLNYLQETLQTLNAKELRQTAELCEELERLLLSHVQSASQEQKNRFVARALQLMENVFAHENTLSLQGN IQARSLALSLYRTFDGLDQIFGLNYDADVGMKTDVNGTERLYEGAGLGVQSSYSTLLTALREVQASQGTRFIDLGSGYGR VGLVVGVLRPDIDFIGYEYVKHRVDISNESTAKFGLQDHVHFFTQDLSEKDFRIPDAEVYYMFDPFSKDTYQHVLNQLVE VSRRQRIVVVTKGNARLWLKEIAEREGWLPGQEFDGGNLSLFRSRE
Sequences:
>Translated_366_residues MNINQSLLCEFVIKGLVSYKKELRGPFLQDFRQQFASLSPEEVAEAFIDVTFLGSALTFLQGEQWNLKKDPDTSSENYLR FTEQTFASNLLSLNYLQETLQTLNAKELRQTAELCEELERLLLSHVQSASQEQKNRFVARALQLMENVFAHENTLSLQGN IQARSLALSLYRTFDGLDQIFGLNYDADVGMKTDVNGTERLYEGAGLGVQSSYSTLLTALREVQASQGTRFIDLGSGYGR VGLVVGVLRPDIDFIGYEYVKHRVDISNESTAKFGLQDHVHFFTQDLSEKDFRIPDAEVYYMFDPFSKDTYQHVLNQLVE VSRRQRIVVVTKGNARLWLKEIAEREGWLPGQEFDGGNLSLFRSRE >Mature_366_residues MNINQSLLCEFVIKGLVSYKKELRGPFLQDFRQQFASLSPEEVAEAFIDVTFLGSALTFLQGEQWNLKKDPDTSSENYLR FTEQTFASNLLSLNYLQETLQTLNAKELRQTAELCEELERLLLSHVQSASQEQKNRFVARALQLMENVFAHENTLSLQGN IQARSLALSLYRTFDGLDQIFGLNYDADVGMKTDVNGTERLYEGAGLGVQSSYSTLLTALREVQASQGTRFIDLGSGYGR VGLVVGVLRPDIDFIGYEYVKHRVDISNESTAKFGLQDHVHFFTQDLSEKDFRIPDAEVYYMFDPFSKDTYQHVLNQLVE VSRRQRIVVVTKGNARLWLKEIAEREGWLPGQEFDGGNLSLFRSRE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41722; Mature: 41722
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNINQSLLCEFVIKGLVSYKKELRGPFLQDFRQQFASLSPEEVAEAFIDVTFLGSALTFL CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH QGEQWNLKKDPDTSSENYLRFTEQTFASNLLSLNYLQETLQTLNAKELRQTAELCEELER CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LLLSHVQSASQEQKNRFVARALQLMENVFAHENTLSLQGNIQARSLALSLYRTFDGLDQI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHH FGLNYDADVGMKTDVNGTERLYEGAGLGVQSSYSTLLTALREVQASQGTRFIDLGSGYGR HCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCH VGLVVGVLRPDIDFIGYEYVKHRVDISNESTAKFGLQDHVHFFTQDLSEKDFRIPDAEVY HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCEEE YMFDPFSKDTYQHVLNQLVEVSRRQRIVVVTKGNARLWLKEIAEREGWLPGQEFDGGNLS EEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCEE LFRSRE EEECCC >Mature Secondary Structure MNINQSLLCEFVIKGLVSYKKELRGPFLQDFRQQFASLSPEEVAEAFIDVTFLGSALTFL CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH QGEQWNLKKDPDTSSENYLRFTEQTFASNLLSLNYLQETLQTLNAKELRQTAELCEELER CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LLLSHVQSASQEQKNRFVARALQLMENVFAHENTLSLQGNIQARSLALSLYRTFDGLDQI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHH FGLNYDADVGMKTDVNGTERLYEGAGLGVQSSYSTLLTALREVQASQGTRFIDLGSGYGR HCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCH VGLVVGVLRPDIDFIGYEYVKHRVDISNESTAKFGLQDHVHFFTQDLSEKDFRIPDAEVY HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCEEE YMFDPFSKDTYQHVLNQLVEVSRRQRIVVVTKGNARLWLKEIAEREGWLPGQEFDGGNLS EEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCEE LFRSRE EEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA