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The map label for this gene is ywnA [H]

Identifier: 42522704

GI number: 42522704

Start: 1106471

End: 1106884

Strand: Direct

Name: ywnA [H]

Synonym: Bd1163

Alternate gene names: 42522704

Gene position: 1106471-1106884 (Clockwise)

Preceding gene: 42522702

Following gene: 42522705

Centisome position: 29.25

GC content: 49.76

Gene sequence:

>414_bases
ATGGTTGATCAAAGGTTTTCTGTCTCAGTTCATATTATGACTGCCCTGGCTTACCACAAGGGCGATCTGATGACGTCTGA
AGAATTGGGCGCGAGCATTCGCACCAATCCGACGGTGATCCGCCGTTTGATCTCCAAACTTGTTGATGCCGGACTATTGA
CGTCCTTCAAAGGCAAGGCGGGCGGTGTGAAGCTGGCCAAAGCCCCGAAGGAAATTTCCCTTCGTGATGTCTATGTGGCG
ATCACCGACAAGAAGCTGATTGCGACTCCGGATAAAGAGCCCTTCAAAAACTGCGTTGTCAGCTGTTCAATGAAAAAGCT
GATGTGCGAGCTGGTGGATGGCATTGAGAACAACTCTATGGATTATCTGGGCGGGATCCGTTTGTCTGATCTGACGTCCA
AAATCGCCAAATGA

Upstream 100 bases:

>100_bases
TAAATGCAACAGTAAAAGATACATTTAAGGAAGCCTCGGGTCCTTAGGGACTTAATTCCTTGATATTGTTTATTTTTGAG
GCTTAAGGTAAGATCTAGAC

Downstream 100 bases:

>100_bases
AGTCCGTCTATCCTGCCGAAGAAATTCGCGCCGAACGAATCACTCTGAAAAAACACAAAATTGAAATGGCTGAAACCATG
TTTCAGTATGTCGACCAGGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MVDQRFSVSVHIMTALAYHKGDLMTSEELGASIRTNPTVIRRLISKLVDAGLLTSFKGKAGGVKLAKAPKEISLRDVYVA
ITDKKLIATPDKEPFKNCVVSCSMKKLMCELVDGIENNSMDYLGGIRLSDLTSKIAK

Sequences:

>Translated_137_residues
MVDQRFSVSVHIMTALAYHKGDLMTSEELGASIRTNPTVIRRLISKLVDAGLLTSFKGKAGGVKLAKAPKEISLRDVYVA
ITDKKLIATPDKEPFKNCVVSCSMKKLMCELVDGIENNSMDYLGGIRLSDLTSKIAK
>Mature_137_residues
MVDQRFSVSVHIMTALAYHKGDLMTSEELGASIRTNPTVIRRLISKLVDAGLLTSFKGKAGGVKLAKAPKEISLRDVYVA
ITDKKLIATPDKEPFKNCVVSCSMKKLMCELVDGIENNSMDYLGGIRLSDLTSKIAK

Specific function: Unknown

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 14961; Mature: 14961

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS01332 UPF0074

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDQRFSVSVHIMTALAYHKGDLMTSEELGASIRTNPTVIRRLISKLVDAGLLTSFKGKA
CCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
GGVKLAKAPKEISLRDVYVAITDKKLIATPDKEPFKNCVVSCSMKKLMCELVDGIENNSM
CCEEECCCCCCCCEEEEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
DYLGGIRLSDLTSKIAK
HHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MVDQRFSVSVHIMTALAYHKGDLMTSEELGASIRTNPTVIRRLISKLVDAGLLTSFKGKA
CCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
GGVKLAKAPKEISLRDVYVAITDKKLIATPDKEPFKNCVVSCSMKKLMCELVDGIENNSM
CCEEECCCCCCCCEEEEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
DYLGGIRLSDLTSKIAK
HHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9150240; 9384377 [H]