| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522701
Identifier: 42522701
GI number: 42522701
Start: 1103091
End: 1104776
Strand: Direct
Name: 42522701
Synonym: Bd1160
Alternate gene names: NA
Gene position: 1103091-1104776 (Clockwise)
Preceding gene: 42522700
Following gene: 42522702
Centisome position: 29.16
GC content: 53.08
Gene sequence:
>1686_bases ATGGGGGACGGAAAAAATCTGACTCGCAGGGGCTTTATCGCAGGTGGTGCGGTGGCCGGGGCAGCGGCCCTGGTGGCAAC ACCATATGAAAGACTTCTGAATGCTCTTAGCACAGGCTTTATTCATCAAGCCCAGGCTGAAGCAACCGGAAATCTGGGAG CTCGCAACTATATCAATATTCTGATTGCCGGTGGGCCGATGCGCTACACGTTTGATGCGTGGATGCGTACGAATCCTTCA GATGCGCCTTTGGAATACAATCCCATGGTGGCAACGAAACTGGTTCGTTCAGGCAACAACATTGTCGGCACTGAATACGC GACGTTCAACTATAACGGCGTGATGGTGCCACACATGTTTTCACAATCTGTGACGACATCTGCGGGTGCCAAAGCTTTGA CGGAGCTTCTGAATAATATGCTGGTGATCCGTGGCTTCGGCTCCGGTTTTGACGGTCATCCTTTCAATGCGACAATTCAA CAGGCTCCGGTGGGCGGTGTGTCCTCGGTGATGGGTTTGGCTGCCGACTATTCCAAGAAAACCTTTGAGGCGGTGGAGTG GCCCGATCGTGGAGCTTACGGCAACTATGCTTCCATGAGTGGCAAAGCACTGAATATTCTGACGGGCAATCCACTGAATT CTTTGTTGGAGGGGTTTGGCGGTCCAGCCGCAGACCGTGCCAAGGGGCGCAGCCTGAAAGACCGCAACCGTGAGGCTTTT GATCTGGCTCAGGCACGCTTGCGTGCCTATTCGCAGTCTGAATTTGCGGGTTCGACAATTCTTTCCAAAAATCTTTCCAA TGCCTCAGATCTGATGAAAAAAGGCATTGGGAATATCGGTTCTTACTGGGACGGGGCCGTGGCCCGTTATCGGTCCGTGA TTGAGGCCAGCATGCGCCAGCAGGGGCTTGTGGGCATTAATGACGTGGCGATGATTTCTGACCAGGGGAACTTCTGGCGG GTTCACGTCGCTGCGGGCAACCGCGGTCTGGTGGTCAGTCGTGATTCGGATCTGCGTGATTCCATCAAAACTATGACGGC TCCCGGTTCATTGGCAGAAGGTTTGGCATTGGCTGAATACGTTCTGAAAGAAGGCCTGGTCAGCACGATGAATCTGCAAA TGGGTGATCCGGCAGGTTTGATGATTAAGGATGCCGCAGATGGTGTGGTTGGAAATCACGTGGCTATCAAAGACATGCAC GAAACCGGTGCGATTCCGGGCGTGCTGATCACGACGGCATACTATCGAGGCCTGTGTGCGGGAATGATGGAGCTGATCGA ACAATTGAAAAAAACCAAAGTCAACGGTGTGGACCTGTGGTCTGAAACCGTGATTCAGGTGATCTCTGAATTCAACCGCA CGGCAAGAACCAACGGTACAGGCAGTGACCATGGTTTCAATCAGATGGTGACCAGTGTGTTCTCGGGCGCAATCCAGCGC GGTCCATTTGTTGTGGGTAACATCTATCGTGCTGGTCACGGTGGCGGTTACGTCGGCACTCAGGGACGTGCGGCACCGAT AGATGGTTACAATCAAAAAGGCATGCCGTCCCCGACGATGGCAGCATCCACAGTGACAGCACTTTTGCGAGTTCCAAAAA ATCCATACGAGAATCTGGCTGAACCACTGATTCGCCTGAATGGCGATCAGCTGCAGATTCTTAAAGCGGCGAAGCTGGTG GGGTAA
Upstream 100 bases:
>100_bases GCTTCAGCGCAACCAGTCTGTGCGCCATATGGTGAAGCAGATCATGTCTTCAAAATACTATCGTGACGTGAACTATCGGG AAAAATAATCCGGGGGCATT
Downstream 100 bases:
>100_bases GAACAATGATCACAGCCAAGAATAAATTTTTTATGTTGCTGTTATCCGGAGCTGTTCTGACTCAGATGTACCAAAACTGT GGTCAGATGGGCGAGTTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 561; Mature: 560
Protein sequence:
>561_residues MGDGKNLTRRGFIAGGAVAGAAALVATPYERLLNALSTGFIHQAQAEATGNLGARNYINILIAGGPMRYTFDAWMRTNPS DAPLEYNPMVATKLVRSGNNIVGTEYATFNYNGVMVPHMFSQSVTTSAGAKALTELLNNMLVIRGFGSGFDGHPFNATIQ QAPVGGVSSVMGLAADYSKKTFEAVEWPDRGAYGNYASMSGKALNILTGNPLNSLLEGFGGPAADRAKGRSLKDRNREAF DLAQARLRAYSQSEFAGSTILSKNLSNASDLMKKGIGNIGSYWDGAVARYRSVIEASMRQQGLVGINDVAMISDQGNFWR VHVAAGNRGLVVSRDSDLRDSIKTMTAPGSLAEGLALAEYVLKEGLVSTMNLQMGDPAGLMIKDAADGVVGNHVAIKDMH ETGAIPGVLITTAYYRGLCAGMMELIEQLKKTKVNGVDLWSETVIQVISEFNRTARTNGTGSDHGFNQMVTSVFSGAIQR GPFVVGNIYRAGHGGGYVGTQGRAAPIDGYNQKGMPSPTMAASTVTALLRVPKNPYENLAEPLIRLNGDQLQILKAAKLV G
Sequences:
>Translated_561_residues MGDGKNLTRRGFIAGGAVAGAAALVATPYERLLNALSTGFIHQAQAEATGNLGARNYINILIAGGPMRYTFDAWMRTNPS DAPLEYNPMVATKLVRSGNNIVGTEYATFNYNGVMVPHMFSQSVTTSAGAKALTELLNNMLVIRGFGSGFDGHPFNATIQ QAPVGGVSSVMGLAADYSKKTFEAVEWPDRGAYGNYASMSGKALNILTGNPLNSLLEGFGGPAADRAKGRSLKDRNREAF DLAQARLRAYSQSEFAGSTILSKNLSNASDLMKKGIGNIGSYWDGAVARYRSVIEASMRQQGLVGINDVAMISDQGNFWR VHVAAGNRGLVVSRDSDLRDSIKTMTAPGSLAEGLALAEYVLKEGLVSTMNLQMGDPAGLMIKDAADGVVGNHVAIKDMH ETGAIPGVLITTAYYRGLCAGMMELIEQLKKTKVNGVDLWSETVIQVISEFNRTARTNGTGSDHGFNQMVTSVFSGAIQR GPFVVGNIYRAGHGGGYVGTQGRAAPIDGYNQKGMPSPTMAASTVTALLRVPKNPYENLAEPLIRLNGDQLQILKAAKLV G >Mature_560_residues GDGKNLTRRGFIAGGAVAGAAALVATPYERLLNALSTGFIHQAQAEATGNLGARNYINILIAGGPMRYTFDAWMRTNPSD APLEYNPMVATKLVRSGNNIVGTEYATFNYNGVMVPHMFSQSVTTSAGAKALTELLNNMLVIRGFGSGFDGHPFNATIQQ APVGGVSSVMGLAADYSKKTFEAVEWPDRGAYGNYASMSGKALNILTGNPLNSLLEGFGGPAADRAKGRSLKDRNREAFD LAQARLRAYSQSEFAGSTILSKNLSNASDLMKKGIGNIGSYWDGAVARYRSVIEASMRQQGLVGINDVAMISDQGNFWRV HVAAGNRGLVVSRDSDLRDSIKTMTAPGSLAEGLALAEYVLKEGLVSTMNLQMGDPAGLMIKDAADGVVGNHVAIKDMHE TGAIPGVLITTAYYRGLCAGMMELIEQLKKTKVNGVDLWSETVIQVISEFNRTARTNGTGSDHGFNQMVTSVFSGAIQRG PFVVGNIYRAGHGGGYVGTQGRAAPIDGYNQKGMPSPTMAASTVTALLRVPKNPYENLAEPLIRLNGDQLQILKAAKLVG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59536; Mature: 59404
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDGKNLTRRGFIAGGAVAGAAALVATPYERLLNALSTGFIHQAQAEATGNLGARNYINI CCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE LIAGGPMRYTFDAWMRTNPSDAPLEYNPMVATKLVRSGNNIVGTEYATFNYNGVMVPHMF EEECCCCEEEEHHHHCCCCCCCCEECCCHHHHHHHHCCCCEEECEEEEEECCCEECCHHH SQSVTTSAGAKALTELLNNMLVIRGFGSGFDGHPFNATIQQAPVGGVSSVMGLAADYSKK HHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHH TFEAVEWPDRGAYGNYASMSGKALNILTGNPLNSLLEGFGGPAADRAKGRSLKDRNREAF HHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCHHHCCCCCHHCCCHHH DLAQARLRAYSQSEFAGSTILSKNLSNASDLMKKGIGNIGSYWDGAVARYRSVIEASMRQ HHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH QGLVGINDVAMISDQGNFWRVHVAAGNRGLVVSRDSDLRDSIKTMTAPGSLAEGLALAEY CCCCCCCCEEEEECCCCEEEEEEEECCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHH VLKEGLVSTMNLQMGDPAGLMIKDAADGVVGNHVAIKDMHETGAIPGVLITTAYYRGLCA HHHHCCHHHEEEECCCCCCEEEECCCCCCCCCCEEEEECHHHCCCCHHHHHHHHHHHHHH GMMELIEQLKKTKVNGVDLWSETVIQVISEFNRTARTNGTGSDHGFNQMVTSVFSGAIQR HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC GPFVVGNIYRAGHGGGYVGTQGRAAPIDGYNQKGMPSPTMAASTVTALLRVPKNPYENLA CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH EPLIRLNGDQLQILKAAKLVG HHHHHCCCCHHHHHHHHHHCC >Mature Secondary Structure GDGKNLTRRGFIAGGAVAGAAALVATPYERLLNALSTGFIHQAQAEATGNLGARNYINI CCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE LIAGGPMRYTFDAWMRTNPSDAPLEYNPMVATKLVRSGNNIVGTEYATFNYNGVMVPHMF EEECCCCEEEEHHHHCCCCCCCCEECCCHHHHHHHHCCCCEEECEEEEEECCCEECCHHH SQSVTTSAGAKALTELLNNMLVIRGFGSGFDGHPFNATIQQAPVGGVSSVMGLAADYSKK HHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHH TFEAVEWPDRGAYGNYASMSGKALNILTGNPLNSLLEGFGGPAADRAKGRSLKDRNREAF HHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCHHHCCCCCHHCCCHHH DLAQARLRAYSQSEFAGSTILSKNLSNASDLMKKGIGNIGSYWDGAVARYRSVIEASMRQ HHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH QGLVGINDVAMISDQGNFWRVHVAAGNRGLVVSRDSDLRDSIKTMTAPGSLAEGLALAEY CCCCCCCCEEEEECCCCEEEEEEEECCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHH VLKEGLVSTMNLQMGDPAGLMIKDAADGVVGNHVAIKDMHETGAIPGVLITTAYYRGLCA HHHHCCHHHEEEECCCCCCEEEECCCCCCCCCCEEEEECHHHCCCCHHHHHHHHHHHHHH GMMELIEQLKKTKVNGVDLWSETVIQVISEFNRTARTNGTGSDHGFNQMVTSVFSGAIQR HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC GPFVVGNIYRAGHGGGYVGTQGRAAPIDGYNQKGMPSPTMAASTVTALLRVPKNPYENLA CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH EPLIRLNGDQLQILKAAKLVG HHHHHCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA