| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522700
Identifier: 42522700
GI number: 42522700
Start: 1101531
End: 1103078
Strand: Direct
Name: 42522700
Synonym: Bd1159
Alternate gene names: NA
Gene position: 1101531-1103078 (Clockwise)
Preceding gene: 42522699
Following gene: 42522701
Centisome position: 29.12
GC content: 52.0
Gene sequence:
>1548_bases ATGACCGTGACCAAGTTAATCTTTGCATTCACGTTGCTGATGGCACCGTTTGCTTCTGCTCAAGTTTTGAGTGAAGCAGG CTTGTTCAATCGTTGCTACTCCCATTTGACCGGGAAACCGGTGCCTTTGGGGCACGCAACGATGGCGCAGATCCGTGCCG GTAAAATCAAGGCGCTGGACGCCTGTAATTCTTTGTTGGACAAGGCCGAACTGGATGCTTCCGGTCCGTTGGTCAATCGT TCTGACAAAGAAGCCCGCGCCGTTCTAAACACCTTCTATAATTTCCACCGCACCTGGTTCACCGCCAACACGGTTGAACA AATCCAGGAATACAATGAAGAGATGTCCCGCGGGACGATGGATATTTATGACTCGACAGAGCCTGGTCTGGCGCTGACAC GTGCGATGTTTGCCCGCAATGCCCAGTACCGTGATGTTCTGACTCTGGGGCAGGGGGTGCGTGCCCAGCGTGAAGAGGAC ATGGCCGTGCGCAATCGCATCGGCTTTAATGTGACTTTCCCGGGCCGTCGTATTTCCGGTAACAACGCAGGCTTGGACCT GAATCTTTTCAACTTCCGTGCACTCTCTGGCGGGTTCAATGGCAATTCGGACACAACCCAAGCGATGTTTGTGACATTGC CAAAAATTGAAGTGGGGGAGCTGGTCGGTGTGCGCATCGCCACAGATAATGCGACCATTCCGAATCTGTCATTGCAGCCT TTGGGGGCTGATAAGCGCGGCAGCGACCAGCCGGGTTTGAATTTCAGTTTCAATCTTTTCCAGACTCAAGGTGGCGGTGT GCTGGGTACACCTATTTATCTGATGCTGAACTATGGTCATGGCCGTGGTCTTGAGGCCAATGGAACCACCAAGGTTCCGC GCCGCTGGTCTCAGACCAACATGGAATCTTTCTTGTGTGCAGAGCTTCCGGCTTTGCGTGAAAACGACATTCGTCAGTAT GTGGTGGGGAATTCTTCTGCGCCATTTAGAAACTCCAGCAGCTGCGTGATGTGCCATGCGACTTTGGATCCGATGGCTTA CACCGCCCGTAACGTGGTGGTCGGAAATTCTGACTATGCGGCGTTGAGTGCTGGCAGCAGAACTCACTCTAAAACGGCAT TGCATTTGGCGACCTATCGCCCGGATTTTCCTTCTGTGGCCGGCTGGCCTTCGGAGCCGGTGGCAAACTTCCATCGTCAG GTGCCTTCAGGTCGTCTGTTCTTCCGCTCAATGACCGGAGCTTTGATTGATCGTCCGGTGACGGGCATTGCCCAGTTGGG TGCGGCGATGGCTGAAACCAAGGATTACTATTACTGCGCGGCTAAAAGATACTTTGAATATTTCACCGGAATCACAGTGG CTCTTTATGACCGCTCCAATCCGGCAAATGAAGAATTAAATAAGAAACTATCCACTGAAAGCTATGAAGACCGTAAGTTC GTTGAGGCTCTTGGGGAAGAGCTTCAGCGCAACCAGTCTGTGCGCCATATGGTGAAGCAGATCATGTCTTCAAAATACTA TCGTGACGTGAACTATCGGGAAAAATAA
Upstream 100 bases:
>100_bases AGTCTAAACAGCAAAGGAACGCCCCATTGTGAGAACTACAGTCGCGTTCCCGACAAAAGCTCCGATAAGATAAGGGAACT AACGGAACTTCTTTGGGGGA
Downstream 100 bases:
>100_bases TCCGGGGGCATTATGGGGGACGGAAAAAATCTGACTCGCAGGGGCTTTATCGCAGGTGGTGCGGTGGCCGGGGCAGCGGC CCTGGTGGCAACACCATATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 515; Mature: 514
Protein sequence:
>515_residues MTVTKLIFAFTLLMAPFASAQVLSEAGLFNRCYSHLTGKPVPLGHATMAQIRAGKIKALDACNSLLDKAELDASGPLVNR SDKEARAVLNTFYNFHRTWFTANTVEQIQEYNEEMSRGTMDIYDSTEPGLALTRAMFARNAQYRDVLTLGQGVRAQREED MAVRNRIGFNVTFPGRRISGNNAGLDLNLFNFRALSGGFNGNSDTTQAMFVTLPKIEVGELVGVRIATDNATIPNLSLQP LGADKRGSDQPGLNFSFNLFQTQGGGVLGTPIYLMLNYGHGRGLEANGTTKVPRRWSQTNMESFLCAELPALRENDIRQY VVGNSSAPFRNSSSCVMCHATLDPMAYTARNVVVGNSDYAALSAGSRTHSKTALHLATYRPDFPSVAGWPSEPVANFHRQ VPSGRLFFRSMTGALIDRPVTGIAQLGAAMAETKDYYYCAAKRYFEYFTGITVALYDRSNPANEELNKKLSTESYEDRKF VEALGEELQRNQSVRHMVKQIMSSKYYRDVNYREK
Sequences:
>Translated_515_residues MTVTKLIFAFTLLMAPFASAQVLSEAGLFNRCYSHLTGKPVPLGHATMAQIRAGKIKALDACNSLLDKAELDASGPLVNR SDKEARAVLNTFYNFHRTWFTANTVEQIQEYNEEMSRGTMDIYDSTEPGLALTRAMFARNAQYRDVLTLGQGVRAQREED MAVRNRIGFNVTFPGRRISGNNAGLDLNLFNFRALSGGFNGNSDTTQAMFVTLPKIEVGELVGVRIATDNATIPNLSLQP LGADKRGSDQPGLNFSFNLFQTQGGGVLGTPIYLMLNYGHGRGLEANGTTKVPRRWSQTNMESFLCAELPALRENDIRQY VVGNSSAPFRNSSSCVMCHATLDPMAYTARNVVVGNSDYAALSAGSRTHSKTALHLATYRPDFPSVAGWPSEPVANFHRQ VPSGRLFFRSMTGALIDRPVTGIAQLGAAMAETKDYYYCAAKRYFEYFTGITVALYDRSNPANEELNKKLSTESYEDRKF VEALGEELQRNQSVRHMVKQIMSSKYYRDVNYREK >Mature_514_residues TVTKLIFAFTLLMAPFASAQVLSEAGLFNRCYSHLTGKPVPLGHATMAQIRAGKIKALDACNSLLDKAELDASGPLVNRS DKEARAVLNTFYNFHRTWFTANTVEQIQEYNEEMSRGTMDIYDSTEPGLALTRAMFARNAQYRDVLTLGQGVRAQREEDM AVRNRIGFNVTFPGRRISGNNAGLDLNLFNFRALSGGFNGNSDTTQAMFVTLPKIEVGELVGVRIATDNATIPNLSLQPL GADKRGSDQPGLNFSFNLFQTQGGGVLGTPIYLMLNYGHGRGLEANGTTKVPRRWSQTNMESFLCAELPALRENDIRQYV VGNSSAPFRNSSSCVMCHATLDPMAYTARNVVVGNSDYAALSAGSRTHSKTALHLATYRPDFPSVAGWPSEPVANFHRQV PSGRLFFRSMTGALIDRPVTGIAQLGAAMAETKDYYYCAAKRYFEYFTGITVALYDRSNPANEELNKKLSTESYEDRKFV EALGEELQRNQSVRHMVKQIMSSKYYRDVNYREK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57132; Mature: 57001
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVTKLIFAFTLLMAPFASAQVLSEAGLFNRCYSHLTGKPVPLGHATMAQIRAGKIKALD CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHH ACNSLLDKAELDASGPLVNRSDKEARAVLNTFYNFHRTWFTANTVEQIQEYNEEMSRGTM HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHCCCE DIYDSTEPGLALTRAMFARNAQYRDVLTLGQGVRAQREEDMAVRNRIGFNVTFPGRRISG EECCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCEEEECCCCEECC NNAGLDLNLFNFRALSGGFNGNSDTTQAMFVTLPKIEVGELVGVRIATDNATIPNLSLQP CCCCEEEEEEEEEEECCCCCCCCCCCEEEEEEECCEECCCEEEEEEEECCCCCCCCEECC LGADKRGSDQPGLNFSFNLFQTQGGGVLGTPIYLMLNYGHGRGLEANGTTKVPRRWSQTN CCCCCCCCCCCCCCEEEEEEEECCCCEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC MESFLCAELPALRENDIRQYVVGNSSAPFRNSSSCVMCHATLDPMAYTARNVVVGNSDYA HHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCHHHHHCEEEECCCCCE ALSAGSRTHSKTALHLATYRPDFPSVAGWPSEPVANFHRQVPSGRLFFRSMTGALIDRPV EECCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCH TGIAQLGAAMAETKDYYYCAAKRYFEYFTGITVALYDRSNPANEELNKKLSTESYEDRKF HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCHHHHH VEALGEELQRNQSVRHMVKQIMSSKYYRDVNYREK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TVTKLIFAFTLLMAPFASAQVLSEAGLFNRCYSHLTGKPVPLGHATMAQIRAGKIKALD HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHH ACNSLLDKAELDASGPLVNRSDKEARAVLNTFYNFHRTWFTANTVEQIQEYNEEMSRGTM HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHCCCE DIYDSTEPGLALTRAMFARNAQYRDVLTLGQGVRAQREEDMAVRNRIGFNVTFPGRRISG EECCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCEEEECCCCEECC NNAGLDLNLFNFRALSGGFNGNSDTTQAMFVTLPKIEVGELVGVRIATDNATIPNLSLQP CCCCEEEEEEEEEEECCCCCCCCCCCEEEEEEECCEECCCEEEEEEEECCCCCCCCEECC LGADKRGSDQPGLNFSFNLFQTQGGGVLGTPIYLMLNYGHGRGLEANGTTKVPRRWSQTN CCCCCCCCCCCCCCEEEEEEEECCCCEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC MESFLCAELPALRENDIRQYVVGNSSAPFRNSSSCVMCHATLDPMAYTARNVVVGNSDYA HHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCHHHHHCEEEECCCCCE ALSAGSRTHSKTALHLATYRPDFPSVAGWPSEPVANFHRQVPSGRLFFRSMTGALIDRPV EECCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCH TGIAQLGAAMAETKDYYYCAAKRYFEYFTGITVALYDRSNPANEELNKKLSTESYEDRKF HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCHHHHH VEALGEELQRNQSVRHMVKQIMSSKYYRDVNYREK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA