| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is hit
Identifier: 42522624
GI number: 42522624
Start: 1015384
End: 1015878
Strand: Direct
Name: hit
Synonym: Bd1069
Alternate gene names: NA
Gene position: 1015384-1015878 (Clockwise)
Preceding gene: 42522623
Following gene: 42522625
Centisome position: 26.84
GC content: 48.69
Gene sequence:
>495_bases ATGGAGCGAGATGTTTTGTTCCGTCCGGACCGCATGAAATATGTGCGCAAACTGATCAAACCCGATGGCTGTGTTTTTTG CCGGGCCTCTGAGGAAAAAGTCAGCTTTGAAACCTTGTGCGTGTTTAAATCCAAGCATTCGATGGTGGTTCTGAACAAGT TCCCTTACAACAGCGGGCACCTTTTGGTATTGCCAAAGCGCCACTGTGGGGACCTGTTGAAGCTTTCCGATGATGAATAT CATGACCTGCAAAATGTCATTCGTCTGACCATGCAGGCCTTGAATGAGCTTTACCAGCCGGGCGGCATTAATGTGGGTTT GAACCACGGGGCTGTGGCGGGGGCGGGGATTCCTGAACATCTTCACTACCATGTGATTCCCCGATGGACCGGGGACCTTA ATTTCTTCCCGTTGATTGCTGAGACCAAGGTCTTGGTTGAAAGTCTTGAGCAGACCTACGAGAAGGTATGGAGTATTTTA AGAAAATATGAATAG
Upstream 100 bases:
>100_bases AAAGACATCCGCGAAAAAGACACCCGCAAAAAGAAAAGCGCCAATCAAGGCCCCTGCGGCCGCTCACGGCAAAATCCAGA TCGGCAAGGATGTCTGGCCG
Downstream 100 bases:
>100_bases AGGCGTGACTTTCCAAACAGCTCCCATGACCCCTGTGGTGAAGTGGCTGCTGATCATCAATGTGGCTATCTGGTTCGTGT TCCAAGTGATCATGGAAGGC
Product: hit family hydrolase
Products: NA
Alternate protein names: ATP adenylyltransferase; Diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase; AP,A phosphorylase [H]
Number of amino acids: Translated: 164; Mature: 164
Protein sequence:
>164_residues MERDVLFRPDRMKYVRKLIKPDGCVFCRASEEKVSFETLCVFKSKHSMVVLNKFPYNSGHLLVLPKRHCGDLLKLSDDEY HDLQNVIRLTMQALNELYQPGGINVGLNHGAVAGAGIPEHLHYHVIPRWTGDLNFFPLIAETKVLVESLEQTYEKVWSIL RKYE
Sequences:
>Translated_164_residues MERDVLFRPDRMKYVRKLIKPDGCVFCRASEEKVSFETLCVFKSKHSMVVLNKFPYNSGHLLVLPKRHCGDLLKLSDDEY HDLQNVIRLTMQALNELYQPGGINVGLNHGAVAGAGIPEHLHYHVIPRWTGDLNFFPLIAETKVLVESLEQTYEKVWSIL RKYE >Mature_164_residues MERDVLFRPDRMKYVRKLIKPDGCVFCRASEEKVSFETLCVFKSKHSMVVLNKFPYNSGHLLVLPKRHCGDLLKLSDDEY HDLQNVIRLTMQALNELYQPGGINVGLNHGAVAGAGIPEHLHYHVIPRWTGDLNFFPLIAETKVLVESLEQTYEKVWSIL RKYE
Specific function: Catabolizes diadenosine 5',5'''-P1,P4-tetraphosphate (Ap4A) into ADP and ATP. It does not catalyze the reverse phosphorolysis reaction. The optimum substrates are dinucleoside polyphosphates containing four or five phosphate residues [H]
COG id: COG0537
COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HIT domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011146 - InterPro: IPR011151 - InterPro: IPR001310 [H]
Pfam domain/function: PF01230 HIT [H]
EC number: =2.7.7.53 [H]
Molecular weight: Translated: 18954; Mature: 18954
Theoretical pI: Translated: 8.00; Mature: 8.00
Prosite motif: PS00133 CARBOXYPEPT_ZN_2 ; PS51084 HIT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERDVLFRPDRMKYVRKLIKPDGCVFCRASEEKVSFETLCVFKSKHSMVVLNKFPYNSGH CCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHEEEEECCCCEEEEEECCCCCCC LLVLPKRHCGDLLKLSDDEYHDLQNVIRLTMQALNELYQPGGINVGLNHGAVAGAGIPEH EEEECCHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEECCCCCCC LHYHVIPRWTGDLNFFPLIAETKVLVESLEQTYEKVWSILRKYE CEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MERDVLFRPDRMKYVRKLIKPDGCVFCRASEEKVSFETLCVFKSKHSMVVLNKFPYNSGH CCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHEEEEECCCCEEEEEECCCCCCC LLVLPKRHCGDLLKLSDDEYHDLQNVIRLTMQALNELYQPGGINVGLNHGAVAGAGIPEH EEEECCHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEECCCCCCC LHYHVIPRWTGDLNFFPLIAETKVLVESLEQTYEKVWSILRKYE CEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12368430; 12218036 [H]