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The map label for this gene is 42522625

Identifier: 42522625

GI number: 42522625

Start: 1015883

End: 1016617

Strand: Direct

Name: 42522625

Synonym: Bd1071

Alternate gene names: NA

Gene position: 1015883-1016617 (Clockwise)

Preceding gene: 42522624

Following gene: 42522626

Centisome position: 26.85

GC content: 52.79

Gene sequence:

>735_bases
GTGACTTTCCAAACAGCTCCCATGACCCCTGTGGTGAAGTGGCTGCTGATCATCAATGTGGCTATCTGGTTCGTGTTCCA
AGTGATCATGGAAGGCTTCCTGCGTGTTCCTTTCACGTCTATCTTCGGCTTGTTCCCGGGTAAGGTCCTTTTCGACTTCC
ATATCTGGCAGCCTTTCACGTACATGTTCCTGCACTCCATGCAGGTGACCCATATCCTGTTTAACATGCTGATGTTGTGG
TTCTTCGGAGCCGAGCTGGAGCAGCGCTGGGGTTCGAAGTTCTTCCTGATCTACTATTTGGTAGCGGGTGTGGGCGCAGC
GATCCTTTACTGCCTGGGTGTGTGGGTTTATGCCCTGATCACGGGTTCGCAAACCGGTCTGATTGTGCCGGTGGTGGGGG
CTTCCGGGGCGGTCTTCGGTCTTTTGCTGGCGCAGGGGATGATCTTCGGCGAGCGTATTGTTTACTTCTTTATGCTGTTC
CCGATGAAGACCAAGTACTTCGTGGCTTTGATGGGTCTGGTGCAACTGGCCTCCCTTATGACTTCCAGCGTCGCTGGCGG
AGAAGTGGCTTATTTGGCCCATTTGGGCGGGATCGTGGCCGGCTTCATCTGCCTTAAAATGAAGGGCTGGTTTGACCGTA
ATGAATGGAAGAAGAAGGCCAAGAGCAAGGGCCGGAATCTGCGCCTGGTGGTCAATAACGAGAAAAATGAAAAACCTCCC
AAGTATTGGAACTAA

Upstream 100 bases:

>100_bases
AATTTCTTCCCGTTGATTGCTGAGACCAAGGTCTTGGTTGAAAGTCTTGAGCAGACCTACGAGAAGGTATGGAGTATTTT
AAGAAAATATGAATAGAGGC

Downstream 100 bases:

>100_bases
CTAAAGCGGCCCCCTAGACGGGGCCTTTTTTTTGGGCTATAAATGGGGGCTCGATTGCGAAAAGGGGATTTATGTCTTTG
GCTCAAGCTAACAAAAATTT

Product: integral membrane protein

Products: NA

Alternate protein names: Peptidase; Rhomboid-Like Protein; Transmembrane Rhomboid Family Protein; Integral Membrane Protein; Rhomboid Protein; Cytoplasmic Membrane Protein; Rhomboid Serine Protease

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MTFQTAPMTPVVKWLLIINVAIWFVFQVIMEGFLRVPFTSIFGLFPGKVLFDFHIWQPFTYMFLHSMQVTHILFNMLMLW
FFGAELEQRWGSKFFLIYYLVAGVGAAILYCLGVWVYALITGSQTGLIVPVVGASGAVFGLLLAQGMIFGERIVYFFMLF
PMKTKYFVALMGLVQLASLMTSSVAGGEVAYLAHLGGIVAGFICLKMKGWFDRNEWKKKAKSKGRNLRLVVNNEKNEKPP
KYWN

Sequences:

>Translated_244_residues
MTFQTAPMTPVVKWLLIINVAIWFVFQVIMEGFLRVPFTSIFGLFPGKVLFDFHIWQPFTYMFLHSMQVTHILFNMLMLW
FFGAELEQRWGSKFFLIYYLVAGVGAAILYCLGVWVYALITGSQTGLIVPVVGASGAVFGLLLAQGMIFGERIVYFFMLF
PMKTKYFVALMGLVQLASLMTSSVAGGEVAYLAHLGGIVAGFICLKMKGWFDRNEWKKKAKSKGRNLRLVVNNEKNEKPP
KYWN
>Mature_243_residues
TFQTAPMTPVVKWLLIINVAIWFVFQVIMEGFLRVPFTSIFGLFPGKVLFDFHIWQPFTYMFLHSMQVTHILFNMLMLWF
FGAELEQRWGSKFFLIYYLVAGVGAAILYCLGVWVYALITGSQTGLIVPVVGASGAVFGLLLAQGMIFGERIVYFFMLFP
MKTKYFVALMGLVQLASLMTSSVAGGEVAYLAHLGGIVAGFICLKMKGWFDRNEWKKKAKSKGRNLRLVVNNEKNEKPPK
YWN

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27764; Mature: 27633

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFQTAPMTPVVKWLLIINVAIWFVFQVIMEGFLRVPFTSIFGLFPGKVLFDFHIWQPFT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHEEEEHHHHHHH
YMFLHSMQVTHILFNMLMLWFFGAELEQRWGSKFFLIYYLVAGVGAAILYCLGVWVYALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGSQTGLIVPVVGASGAVFGLLLAQGMIFGERIVYFFMLFPMKTKYFVALMGLVQLASLM
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
TSSVAGGEVAYLAHLGGIVAGFICLKMKGWFDRNEWKKKAKSKGRNLRLVVNNEKNEKPP
HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCC
KYWN
CCCC
>Mature Secondary Structure 
TFQTAPMTPVVKWLLIINVAIWFVFQVIMEGFLRVPFTSIFGLFPGKVLFDFHIWQPFT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHEEEEHHHHHHH
YMFLHSMQVTHILFNMLMLWFFGAELEQRWGSKFFLIYYLVAGVGAAILYCLGVWVYALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGSQTGLIVPVVGASGAVFGLLLAQGMIFGERIVYFFMLFPMKTKYFVALMGLVQLASLM
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
TSSVAGGEVAYLAHLGGIVAGFICLKMKGWFDRNEWKKKAKSKGRNLRLVVNNEKNEKPP
HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCC
KYWN
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA