| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522601
Identifier: 42522601
GI number: 42522601
Start: 988541
End: 989986
Strand: Direct
Name: 42522601
Synonym: Bd1044
Alternate gene names: NA
Gene position: 988541-989986 (Clockwise)
Preceding gene: 42522599
Following gene: 42522602
Centisome position: 26.13
GC content: 52.14
Gene sequence:
>1446_bases ATGAAGAACACACAATGGGTGGCGGGTTTGCTTGCCGCTGTGACTTTGATTCAGGCCTCAGCTCACGCTGAGATTATTTC GGACCTGCCGGGCTTTGAGGACGGTGGTTCTCAAGGACAGACGTTCCGTCCGCCTGCTCCGCCGATGCCCAATGAAGGTG TAACCCGCCAATATACGGATGTGGCGAACCTGGATCAGATCAGTCGCAAATCCGGCGGGGAAGCCTATCGCTTTAATCTG GTGCAGCCTACAAATCTGAAGTACCTGGAACTGACGGTGCAATCCAGCCGTCTGAAAATTCATGAAGCCACTGTTCTGAC CGTGGGCGGTCAGCGCTACATGATCCGTGAATTCCATAACAGCAATGTTCTGGAGACCGGCACCCAGTTGACTTCTGAAA ACCTGAATATCAATGACGACATCCGCACTATTGAGCTGCGTATGGAGTCTTATTCCCATGCCGCGACGATTTCTTTGAAA GCCGTGGGGGACAGAGCTGTTCCCCGCATGTCTGTGCAACGCCCTGTGATTGTGGCTCCGCCGTCACAGCCGAATCGTCC GACTCAGCCAAGCCGTCCTGTGGATGTTCGTTTGAGATCCGGTGACGTGGTGGTGTCTGTAAGTTCTCAAGGCAAATACT ATGACGGCCGTGTTGTCGAAGTTTATGGCAATGGCAAAGTCCTGGTTCGTGACGAGGACGACGGCAAAACTTACGTTCGT GATATTTCCTCTGTGGGTAAACGTATTTCCTGTGCTTCCAATGGCCTGTGCGAAGGTGAGGAAGTCATGGCCTATCCAGT GGGTTCTCAAGCCAAGACCTATCTGGGTAAGATCGTTGCGATCTATTCCAACGACATGGTGAAGATGCGTGACTCTGATG ATTCCAAGGACTATTTCCGCGATCTCAAGATCATTCACCGCCGCTTGAACTGTCTGGAGTCCCTGTGTGTGAAAGACCGT GTTCTTTCCCGTTCCGGTGACGGCACCAAGTACTATGGTGGCGTTATCGACTCCATCTACTCCAATGGTGTGATCGCTGT TCGTGACGATGATGACGGCAAGGTTTATTCCCGTAATAAAGAGGTCGTTTTTAAGTCCGTACAATGCCACAGTTCAGGTC TTTGCATTAAAGACCGTGTGATGTCGAAGTCCGGTGACAAGTACTACTTCGGTTCCGTGACGGGTGTTTATTCAAATGGC CTGATCTATGTGCGCGATGACGACGATGGTAAGTCCTATGCTCGTCAGCACGATGTTGTCTTTAAAGAGATCAGATGTGC CAACGGGTTCTGCCGCGGGGACCGTGTTCTGTCCACTCTGAGCAATGGCCGCTACTATACAGGCCGTGTGGAAGGGGCTT ATGCCGGCGGTTTGATCTCGGTTCGAGATGACGACGACGGTAAGGTGTATCTGCGCCCTCATACGGTCCTGTCTCGCGCC AGATAG
Upstream 100 bases:
>100_bases TAAAAAATGCCCAGCTCAAAATTAGAGCTTATTTAGGAACCATTGTGGAGGCACGAACTTTGGACTGATCCGCACTGTCT ATTAAAACAGGAGCGTCTTT
Downstream 100 bases:
>100_bases TCGGAAGCGCCCTTGGGCGCCCCCTGTCCAACAATGAGACAGTTGACCAGCTTTATATCAAATTTATCTGTGTTTGAGGC CGCCCGCAGGCGGCACGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 481; Mature: 481
Protein sequence:
>481_residues MKNTQWVAGLLAAVTLIQASAHAEIISDLPGFEDGGSQGQTFRPPAPPMPNEGVTRQYTDVANLDQISRKSGGEAYRFNL VQPTNLKYLELTVQSSRLKIHEATVLTVGGQRYMIREFHNSNVLETGTQLTSENLNINDDIRTIELRMESYSHAATISLK AVGDRAVPRMSVQRPVIVAPPSQPNRPTQPSRPVDVRLRSGDVVVSVSSQGKYYDGRVVEVYGNGKVLVRDEDDGKTYVR DISSVGKRISCASNGLCEGEEVMAYPVGSQAKTYLGKIVAIYSNDMVKMRDSDDSKDYFRDLKIIHRRLNCLESLCVKDR VLSRSGDGTKYYGGVIDSIYSNGVIAVRDDDDGKVYSRNKEVVFKSVQCHSSGLCIKDRVMSKSGDKYYFGSVTGVYSNG LIYVRDDDDGKSYARQHDVVFKEIRCANGFCRGDRVLSTLSNGRYYTGRVEGAYAGGLISVRDDDDGKVYLRPHTVLSRA R
Sequences:
>Translated_481_residues MKNTQWVAGLLAAVTLIQASAHAEIISDLPGFEDGGSQGQTFRPPAPPMPNEGVTRQYTDVANLDQISRKSGGEAYRFNL VQPTNLKYLELTVQSSRLKIHEATVLTVGGQRYMIREFHNSNVLETGTQLTSENLNINDDIRTIELRMESYSHAATISLK AVGDRAVPRMSVQRPVIVAPPSQPNRPTQPSRPVDVRLRSGDVVVSVSSQGKYYDGRVVEVYGNGKVLVRDEDDGKTYVR DISSVGKRISCASNGLCEGEEVMAYPVGSQAKTYLGKIVAIYSNDMVKMRDSDDSKDYFRDLKIIHRRLNCLESLCVKDR VLSRSGDGTKYYGGVIDSIYSNGVIAVRDDDDGKVYSRNKEVVFKSVQCHSSGLCIKDRVMSKSGDKYYFGSVTGVYSNG LIYVRDDDDGKSYARQHDVVFKEIRCANGFCRGDRVLSTLSNGRYYTGRVEGAYAGGLISVRDDDDGKVYLRPHTVLSRA R >Mature_481_residues MKNTQWVAGLLAAVTLIQASAHAEIISDLPGFEDGGSQGQTFRPPAPPMPNEGVTRQYTDVANLDQISRKSGGEAYRFNL VQPTNLKYLELTVQSSRLKIHEATVLTVGGQRYMIREFHNSNVLETGTQLTSENLNINDDIRTIELRMESYSHAATISLK AVGDRAVPRMSVQRPVIVAPPSQPNRPTQPSRPVDVRLRSGDVVVSVSSQGKYYDGRVVEVYGNGKVLVRDEDDGKTYVR DISSVGKRISCASNGLCEGEEVMAYPVGSQAKTYLGKIVAIYSNDMVKMRDSDDSKDYFRDLKIIHRRLNCLESLCVKDR VLSRSGDGTKYYGGVIDSIYSNGVIAVRDDDDGKVYSRNKEVVFKSVQCHSSGLCIKDRVMSKSGDKYYFGSVTGVYSNG LIYVRDDDDGKSYARQHDVVFKEIRCANGFCRGDRVLSTLSNGRYYTGRVEGAYAGGLISVRDDDDGKVYLRPHTVLSRA R
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53275; Mature: 53275
Theoretical pI: Translated: 8.62; Mature: 8.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNTQWVAGLLAAVTLIQASAHAEIISDLPGFEDGGSQGQTFRPPAPPMPNEGVTRQYTD CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC VANLDQISRKSGGEAYRFNLVQPTNLKYLELTVQSSRLKIHEATVLTVGGQRYMIREFHN CCCHHHHHHCCCCCEEEEEEECCCCCEEEEEEEECCEEEEEEEEEEEECCCEEEEEECCC SNVLETGTQLTSENLNINDDIRTIELRMESYSHAATISLKAVGDRAVPRMSVQRPVIVAP CCCCCCCCEECCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCEEECC PSQPNRPTQPSRPVDVRLRSGDVVVSVSSQGKYYDGRVVEVYGNGKVLVRDEDDGKTYVR CCCCCCCCCCCCCEEEEEECCCEEEEECCCCCEECCEEEEEECCCEEEEEECCCCHHHHH DISSVGKRISCASNGLCEGEEVMAYPVGSQAKTYLGKIVAIYSNDMVKMRDSDDSKDYFR HHHHHCCEEECCCCCCCCCCCEEEEECCCHHHHHHHEEEEEECCCEEEECCCCCHHHHHH DLKIIHRRLNCLESLCVKDRVLSRSGDGTKYYGGVIDSIYSNGVIAVRDDDDGKVYSRNK HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCEEEEEECCCCCEEECCC EVVFKSVQCHSSGLCIKDRVMSKSGDKYYFGSVTGVYSNGLIYVRDDDDGKSYARQHDVV EEEEEEEEECCCCCEEHHHHHCCCCCEEEEECEEEEECCCEEEEEECCCCHHHHHHHHHH FKEIRCANGFCRGDRVLSTLSNGRYYTGRVEGAYAGGLISVRDDDDGKVYLRPHTVLSRA HHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCEECCCEEEEEECCCCEEEECCHHHHHCC R C >Mature Secondary Structure MKNTQWVAGLLAAVTLIQASAHAEIISDLPGFEDGGSQGQTFRPPAPPMPNEGVTRQYTD CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC VANLDQISRKSGGEAYRFNLVQPTNLKYLELTVQSSRLKIHEATVLTVGGQRYMIREFHN CCCHHHHHHCCCCCEEEEEEECCCCCEEEEEEEECCEEEEEEEEEEEECCCEEEEEECCC SNVLETGTQLTSENLNINDDIRTIELRMESYSHAATISLKAVGDRAVPRMSVQRPVIVAP CCCCCCCCEECCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCEEECC PSQPNRPTQPSRPVDVRLRSGDVVVSVSSQGKYYDGRVVEVYGNGKVLVRDEDDGKTYVR CCCCCCCCCCCCCEEEEEECCCEEEEECCCCCEECCEEEEEECCCEEEEEECCCCHHHHH DISSVGKRISCASNGLCEGEEVMAYPVGSQAKTYLGKIVAIYSNDMVKMRDSDDSKDYFR HHHHHCCEEECCCCCCCCCCCEEEEECCCHHHHHHHEEEEEECCCEEEECCCCCHHHHHH DLKIIHRRLNCLESLCVKDRVLSRSGDGTKYYGGVIDSIYSNGVIAVRDDDDGKVYSRNK HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCEEEEEECCCCCEEECCC EVVFKSVQCHSSGLCIKDRVMSKSGDKYYFGSVTGVYSNGLIYVRDDDDGKSYARQHDVV EEEEEEEEECCCCCEEHHHHHCCCCCEEEEECEEEEECCCEEEEEECCCCHHHHHHHHHH FKEIRCANGFCRGDRVLSTLSNGRYYTGRVEGAYAGGLISVRDDDDGKVYLRPHTVLSRA HHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCEECCCEEEEEECCCCEEEECCHHHHHCC R C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA