| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is ppk [H]
Identifier: 42522570
GI number: 42522570
Start: 954925
End: 957105
Strand: Direct
Name: ppk [H]
Synonym: Bd1010
Alternate gene names: 42522570
Gene position: 954925-957105 (Clockwise)
Preceding gene: 42522567
Following gene: 42522571
Centisome position: 25.24
GC content: 51.31
Gene sequence:
>2181_bases TTGAACACGCCCAAAGCGGCTTCGCCGAAACGCACATCGAAAAAGAAATCTACACGCAAGCCGAAGGTTGTCGAACATCC TCTGTCATCTGAAAGTCTTTTCTCCAGCCGGGAGATCGGCTGGCTGAATTTCAACAGACGGGTGTTGGCTGAAGCCGAGG ACGCTCGCAATCCTTTGTTGGAGCGTGTGAAATTCTTAAGCATCTCCGGATCCAATCTGGATGAGTTCTTTATGAAACGT GTGGGCGGTTTGAAACGTCACATGGCCTATGGTGTTTCCGCCAAATCGTCTGACGGAAAAACACCGATGCATCAGTTGCA GGAAATCCGTCAGTTTGTGATTCCGATGATTCAGGATCAGGCTCATGCCTACAACAAGGTGCTTAAGCCTGCTCTGGAAA AAGAAGGCATCCATCTGCTTTCTTGGAAGGACCTTTCTGACAAAGAAAAAGAAAGTGTCAAAAAGTACTATAACCGCAAT GTCTTCCCGGTACTGACGCCGCTGTCGGTGGATCCAGGACATCCATTCCCGTTCATCTCGAATCTGTCGATTTCTTTAGG AGTGACCCTGAAACATCCCGGAAGTGAAGAAAAGCTCTTTGCCCGGGTGAAAATCCCCAAAGTTTTGCCGCAGTGGATTC GTACTGATGCTGAAAGCAAGGATTATCGCTTCATCAGTCTTTTGGATGTGATCAAGGAAAATCTGGCGGATCTGTTCCCG GCCATGCAGGTGCTGGGAGTGATGCCGTTCCGACTGACTCGTAATGCCGATTCGGACCAGGATCAGGAAGATGCGGAAGA CTTGCTGGAAGCCATTGAGGAAGAACTGCGCCAGCGCCGTTTTGCCGAAGTGGTGCGCCTGGAGCACGGGCCGCACCCGG ATCCGTGGATGCTGAAGTTCCTGATGGAGGAACTGGAGCTGATTGAAGAGGACATTTATGAGACCTCCAGTCTTTTGGAT TTCACAGACTTGGGTGTGATCTCGGATGTAAATCTGCCGAAATTGAAATTTGATCCTTACACTCCGGTGGTGGCGCCCGC ATTTGCCGAAGACGGGCACGGGATGTTTAACGCCATTAAGATGGCGGACCAGCTGGTGCATCATCCCTATGAAAGCTTCG CGGCTTCGGTGGAAAAGTTCATTCGTGTGGCCAGTGAAGATCCCAAGGTGCTGGCGATCAAGATGACTTTGTACCGCACC GGTGATAACAGCCCCTTTATTCGCTCACTGATTCGTGCGGCCGAACAGGGCAAGCAGGTCGTGTGTCTGGTGGAACTGAA GGCGCGCTTCGATGAAGAGCGCAATATCTATTGGGCCACTGAACTTGAAAATGCCGGCGTGCATGTGGTTTATGGCGTTG TTGGTTTGAAGACTCACGCCAAGACCGCGCTGGTGGTTCGTCAGGAGCAAGAGGGCTTGCGCTGTTACTGCCATATCGGG ACGGGAAATTACAACGTGGCGACTTCGCGATTCTATACGGATCTGGGGCTTTTGACGGCGCGTGAAGAAATCACCAATGA TGTGGTGGAGTTTTTCCATTATCTGACGGGAAGATCTTTAAAGAGCAACTATCAGAATCTGCTGATTGCGCCCGTGAATA TGTTCTCGCGCTTTAAGTCCATGATCGAACGCGAGGCCGAACACGCCAAAGCGGGTCGTCCGGCGCAGATCATTGCCAAA TTCAATAACTTCGAAGAAAACGACATTGCTGTGGCCCTGTACGCGGCTTCGCAAAAAGGGGTTGATATCGAGATGATCGT GCGGGGCTTCTGCTGTCTTCGTCCCGGGGTCCCGGGCATGAGTGAGCGCATCCGCGTGACCTCGATCATCGGTCGTTTCC TGGAGCATTCACGCATTTTCTATTTCCGCAACGGGGAAAAGGACCCGGTGGACGGAGAGTTCTATCTGGGATCTGCCGAT TGGATGTATCGCAATCTGCATGCCCGGGTGGAGGCCATTGTGCCGATTCTGGATCGCAGTTTGAAAGAAAAGTGCTGGGA GATCCTGAGTTTGTGTGTGAAAGAGCAACGCCAGTCCTGGGAAATGAAGTCCGATGGGACTTATGTACGTCAGAACTCGC AGGATGTCGGTTTGCATCAAACCCTGATGCAAATTGCGAAAGCCCGGGTTACATTTGTGGATGAAAATACCAGTTCATCC ACCAGTTCAAATTCGGAGTAG
Upstream 100 bases:
>100_bases TTCTTTTGGAGTATTTTGCATGTCGTTGTTCCTGGTAAGACATTGCTAAAGAAGTCGCTTTATTGTGAAATAAGAGAGTT AGGAGTCAAGGAGGATTCTT
Downstream 100 bases:
>100_bases GGCCTAAGTGGAATTGATCATTATCCGTCACGCAGTGGCTGAAGACAAAGAAGAGTTCGCCAAAAAGGGCCAGGAGGACT ACCTGCGTCCGCTGACCCTG
Product: polyphosphate kinase
Products: NA
Alternate protein names: ATP-polyphosphate phosphotransferase; Polyphosphoric acid kinase [H]
Number of amino acids: Translated: 726; Mature: 726
Protein sequence:
>726_residues MNTPKAASPKRTSKKKSTRKPKVVEHPLSSESLFSSREIGWLNFNRRVLAEAEDARNPLLERVKFLSISGSNLDEFFMKR VGGLKRHMAYGVSAKSSDGKTPMHQLQEIRQFVIPMIQDQAHAYNKVLKPALEKEGIHLLSWKDLSDKEKESVKKYYNRN VFPVLTPLSVDPGHPFPFISNLSISLGVTLKHPGSEEKLFARVKIPKVLPQWIRTDAESKDYRFISLLDVIKENLADLFP AMQVLGVMPFRLTRNADSDQDQEDAEDLLEAIEEELRQRRFAEVVRLEHGPHPDPWMLKFLMEELELIEEDIYETSSLLD FTDLGVISDVNLPKLKFDPYTPVVAPAFAEDGHGMFNAIKMADQLVHHPYESFAASVEKFIRVASEDPKVLAIKMTLYRT GDNSPFIRSLIRAAEQGKQVVCLVELKARFDEERNIYWATELENAGVHVVYGVVGLKTHAKTALVVRQEQEGLRCYCHIG TGNYNVATSRFYTDLGLLTAREEITNDVVEFFHYLTGRSLKSNYQNLLIAPVNMFSRFKSMIEREAEHAKAGRPAQIIAK FNNFEENDIAVALYAASQKGVDIEMIVRGFCCLRPGVPGMSERIRVTSIIGRFLEHSRIFYFRNGEKDPVDGEFYLGSAD WMYRNLHARVEAIVPILDRSLKEKCWEILSLCVKEQRQSWEMKSDGTYVRQNSQDVGLHQTLMQIAKARVTFVDENTSSS TSSNSE
Sequences:
>Translated_726_residues MNTPKAASPKRTSKKKSTRKPKVVEHPLSSESLFSSREIGWLNFNRRVLAEAEDARNPLLERVKFLSISGSNLDEFFMKR VGGLKRHMAYGVSAKSSDGKTPMHQLQEIRQFVIPMIQDQAHAYNKVLKPALEKEGIHLLSWKDLSDKEKESVKKYYNRN VFPVLTPLSVDPGHPFPFISNLSISLGVTLKHPGSEEKLFARVKIPKVLPQWIRTDAESKDYRFISLLDVIKENLADLFP AMQVLGVMPFRLTRNADSDQDQEDAEDLLEAIEEELRQRRFAEVVRLEHGPHPDPWMLKFLMEELELIEEDIYETSSLLD FTDLGVISDVNLPKLKFDPYTPVVAPAFAEDGHGMFNAIKMADQLVHHPYESFAASVEKFIRVASEDPKVLAIKMTLYRT GDNSPFIRSLIRAAEQGKQVVCLVELKARFDEERNIYWATELENAGVHVVYGVVGLKTHAKTALVVRQEQEGLRCYCHIG TGNYNVATSRFYTDLGLLTAREEITNDVVEFFHYLTGRSLKSNYQNLLIAPVNMFSRFKSMIEREAEHAKAGRPAQIIAK FNNFEENDIAVALYAASQKGVDIEMIVRGFCCLRPGVPGMSERIRVTSIIGRFLEHSRIFYFRNGEKDPVDGEFYLGSAD WMYRNLHARVEAIVPILDRSLKEKCWEILSLCVKEQRQSWEMKSDGTYVRQNSQDVGLHQTLMQIAKARVTFVDENTSSS TSSNSE >Mature_726_residues MNTPKAASPKRTSKKKSTRKPKVVEHPLSSESLFSSREIGWLNFNRRVLAEAEDARNPLLERVKFLSISGSNLDEFFMKR VGGLKRHMAYGVSAKSSDGKTPMHQLQEIRQFVIPMIQDQAHAYNKVLKPALEKEGIHLLSWKDLSDKEKESVKKYYNRN VFPVLTPLSVDPGHPFPFISNLSISLGVTLKHPGSEEKLFARVKIPKVLPQWIRTDAESKDYRFISLLDVIKENLADLFP AMQVLGVMPFRLTRNADSDQDQEDAEDLLEAIEEELRQRRFAEVVRLEHGPHPDPWMLKFLMEELELIEEDIYETSSLLD FTDLGVISDVNLPKLKFDPYTPVVAPAFAEDGHGMFNAIKMADQLVHHPYESFAASVEKFIRVASEDPKVLAIKMTLYRT GDNSPFIRSLIRAAEQGKQVVCLVELKARFDEERNIYWATELENAGVHVVYGVVGLKTHAKTALVVRQEQEGLRCYCHIG TGNYNVATSRFYTDLGLLTAREEITNDVVEFFHYLTGRSLKSNYQNLLIAPVNMFSRFKSMIEREAEHAKAGRPAQIIAK FNNFEENDIAVALYAASQKGVDIEMIVRGFCCLRPGVPGMSERIRVTSIIGRFLEHSRIFYFRNGEKDPVDGEFYLGSAD WMYRNLHARVEAIVPILDRSLKEKCWEILSLCVKEQRQSWEMKSDGTYVRQNSQDVGLHQTLMQIAKARVTFVDENTSSS TSSNSE
Specific function: Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) [H]
COG id: COG0855
COG function: function code P; Polyphosphate kinase
Gene ontology:
Cell location: Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polyphosphate kinase family [H]
Homologues:
Organism=Escherichia coli, GI1788847, Length=667, Percent_Identity=34.3328335832084, Blast_Score=364, Evalue=1e-101,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003414 [H]
Pfam domain/function: PF02503 PP_kinase [H]
EC number: =2.7.4.1 [H]
Molecular weight: Translated: 82749; Mature: 82749
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTPKAASPKRTSKKKSTRKPKVVEHPLSSESLFSSREIGWLNFNRRVLAEAEDARNPLL CCCCCCCCCCHHHHHHHCCCCCHHCCCCCCHHHHCCCCCEEEECCCHHHHCCHHHHHHHH ERVKFLSISGSNLDEFFMKRVGGLKRHMAYGVSAKSSDGKTPMHQLQEIRQFVIPMIQDQ HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH AHAYNKVLKPALEKEGIHLLSWKDLSDKEKESVKKYYNRNVFPVLTPLSVDPGHPFPFIS HHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCC NLSISLGVTLKHPGSEEKLFARVKIPKVLPQWIRTDAESKDYRFISLLDVIKENLADLFP CCEEEEEEEECCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH AMQVLGVMPFRLTRNADSDQDQEDAEDLLEAIEEELRQRRFAEVVRLEHGPHPDPWMLKF HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH LMEELELIEEDIYETSSLLDFTDLGVISDVNLPKLKFDPYTPVVAPAFAEDGHGMFNAIK HHHHHHHHHHHHHHHHHHCCHHHCCEEECCCCCCEECCCCCCCCCCCCCCCCCHHHHHHH MADQLVHHPYESFAASVEKFIRVASEDPKVLAIKMTLYRTGDNSPFIRSLIRAAEQGKQV HHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCCEE VCLVELKARFDEERNIYWATELENAGVHVVYGVVGLKTHAKTALVVRQEQEGLRCYCHIG EEEEEEHHHCCCCCCEEEEEECCCCCEEEEEEEHHHHHCCCEEEEEEECCCCCEEEEEEC TGNYNVATSRFYTDLGLLTAREEITNDVVEFFHYLTGRSLKSNYQNLLIAPVNMFSRFKS CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEHHHHHHHHHH MIEREAEHAKAGRPAQIIAKFNNFEENDIAVALYAASQKGVDIEMIVRGFCCLRPGVPGM HHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCH SERIRVTSIIGRFLEHSRIFYFRNGEKDPVDGEFYLGSADWMYRNLHARVEAIVPILDRS HHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH LKEKCWEILSLCVKEQRQSWEMKSDGTYVRQNSQDVGLHQTLMQIAKARVTFVDENTSSS HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHEEEEECCCCCC TSSNSE CCCCCC >Mature Secondary Structure MNTPKAASPKRTSKKKSTRKPKVVEHPLSSESLFSSREIGWLNFNRRVLAEAEDARNPLL CCCCCCCCCCHHHHHHHCCCCCHHCCCCCCHHHHCCCCCEEEECCCHHHHCCHHHHHHHH ERVKFLSISGSNLDEFFMKRVGGLKRHMAYGVSAKSSDGKTPMHQLQEIRQFVIPMIQDQ HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH AHAYNKVLKPALEKEGIHLLSWKDLSDKEKESVKKYYNRNVFPVLTPLSVDPGHPFPFIS HHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCC NLSISLGVTLKHPGSEEKLFARVKIPKVLPQWIRTDAESKDYRFISLLDVIKENLADLFP CCEEEEEEEECCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH AMQVLGVMPFRLTRNADSDQDQEDAEDLLEAIEEELRQRRFAEVVRLEHGPHPDPWMLKF HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH LMEELELIEEDIYETSSLLDFTDLGVISDVNLPKLKFDPYTPVVAPAFAEDGHGMFNAIK HHHHHHHHHHHHHHHHHHCCHHHCCEEECCCCCCEECCCCCCCCCCCCCCCCCHHHHHHH MADQLVHHPYESFAASVEKFIRVASEDPKVLAIKMTLYRTGDNSPFIRSLIRAAEQGKQV HHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCCEE VCLVELKARFDEERNIYWATELENAGVHVVYGVVGLKTHAKTALVVRQEQEGLRCYCHIG EEEEEEHHHCCCCCCEEEEEECCCCCEEEEEEEHHHHHCCCEEEEEEECCCCCEEEEEEC TGNYNVATSRFYTDLGLLTAREEITNDVVEFFHYLTGRSLKSNYQNLLIAPVNMFSRFKS CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEHHHHHHHHHH MIEREAEHAKAGRPAQIIAKFNNFEENDIAVALYAASQKGVDIEMIVRGFCCLRPGVPGM HHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCH SERIRVTSIIGRFLEHSRIFYFRNGEKDPVDGEFYLGSADWMYRNLHARVEAIVPILDRS HHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH LKEKCWEILSLCVKEQRQSWEMKSDGTYVRQNSQDVGLHQTLMQIAKARVTFVDENTSSS HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHEEEEECCCCCC TSSNSE CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]