| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522533
Identifier: 42522533
GI number: 42522533
Start: 915764
End: 917353
Strand: Direct
Name: 42522533
Synonym: Bd0969
Alternate gene names: NA
Gene position: 915764-917353 (Clockwise)
Preceding gene: 42522531
Following gene: 42522534
Centisome position: 24.21
GC content: 53.96
Gene sequence:
>1590_bases ATGTCGTACGTTTTAGGTCTTCTGCTTTTGTGCGTTGTTGTGCAGGTCTCTGCAGCATCCGCCCCATCGTCTGGCTCTGT CGAGCAATTGCGAATTTTTCTGAACCAGAACCCTTATGACAACAATGTCCGTCGCCACCTGATTGAAAAACATCTGGAGC TTCATCAAAGCGCTGAAGCTCATGCGGAGTTTGCCTCTTACAAGAAGTTGGATCCCCATCTGAACGTCGATGGTGGAAAT GCCCTGCAGATGCGGCTGGATATGCTTGATGGAAAGTTTGGTGCTGCCAAACACCTAGCCTTGAAACTATTGACTGTGCC CCAGCTGGGGGCGGAAGACCGCTACCGAGCACATTTAACTTTGGGCGATCTGGCCTATGTTCACTTTACCTCGGGGGATG CGGTTTCCCGCTATAAAAAAGCTCTTTCCGTCAAGCCGGTCCCGGAGGCGAAACATCGACTGGCGCGTGCTTACCTTCAG AACAAAAAGTACGGCCGTGCTCAGGGTATACTGAGCGACCTGATCGGAGTGGGCTACGCCTCGGATCCGGTTCGTTACGA TTATCTGCAAAGTTTGCTGGAGGCCGGACAGAACCAGGCCGCAGCCCTGCGTTTGAGTCAATGGTACAGCGAAGAACCGG GCAATCCATGGATTGTGACAGCCCATGCGCGTTTTTTACTAAGTCTGGGACAGGACGAATCGGCGCGTATGATACTTCAG CAGTATGCTGAGATCTATCAACCAACTACGGAAATCGATGAGCTGTTGCGAAGCACTCAGCCGCAGCGTACTCCAACGGC GGAGACCGTCATGGTGCTTGGGCTGCGCCCGGAGATGCCGGTCAATGCAGGAGTGGTGCGGGGAGCTGCCTCTGCCGGAG AGGCCGCGGGGAAGCAGGCAATGGAATCGTCTTTGAGCCCGCGACACTGGCAGATGCAGGCCGTGGCTGGATATCAGATG ATTAATAACCGGGTGGAAGGGCAGGGATTTAATTCCCTGCTAAGTCCCGAGGCGGGTTACGTTGCAGGTGTTGCCGCCGA AACTGACAATGAAGGTTCCGCCTATTCCTTTGTGGGCAGGGCCCGCACGTCTTGGCAAACCTATAAAATTCCTTCTGGGC TTCAGCAGAATGGAGACCGGTCTCAGGCATTTGATATTGCCGGAGGACTGCAGACCCTGTTGGCAGCCGACTGGCAGTTG CAAATGCAGCTTAACTATCGTTCACGCAGTGGCATTGAGTCGGCGACCAACACTTATGTGTCAGGTTATCAGATGCTGGG TGTGCAGGCGGGAGTTTCTAAAACCTGGCAGCTTCGTTTTCCGTGGAGCTTTGAAGTCCACGCTGATCTGACTTTGCCCG TGTACTTTACCGAGTCCACGGCCGAATCAGGTCAGTTGCGGTTTGGCTATTTTTCAAGCCTGCAGGCACTGGCGCAGTAT CCGCTGCGTGAAGGACTGGCCTTTCGCGCAGGTTTGGGTCTTGTGCGCAACGAGATTCAGTTCAATGGCAATGGGTCCCG CGGTGTGACCGATGCCACAGATTCCGAAGAAGGTTTGATGATTCCAGTCAGTCTTACGTGGGTTTATTAG
Upstream 100 bases:
>100_bases ACAGAAGTTCGGTCCAGAAATGTATTAAGGGGTCCAGAGTGGATGACTTGTAATTGTTAAAAAAAATTGACGTACGACAC ACTGAAACAGTGGAGGGTTT
Downstream 100 bases:
>100_bases GGGGACGTTGTGTTGAAATATGTTTTGATGGCCTGTCTTTTTCTGAGTGCCTGCAATTTTTCTGAAGAGTCTAAAGTCAC AGGAAACACTCCGCAAAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 529; Mature: 528
Protein sequence:
>529_residues MSYVLGLLLLCVVVQVSAASAPSSGSVEQLRIFLNQNPYDNNVRRHLIEKHLELHQSAEAHAEFASYKKLDPHLNVDGGN ALQMRLDMLDGKFGAAKHLALKLLTVPQLGAEDRYRAHLTLGDLAYVHFTSGDAVSRYKKALSVKPVPEAKHRLARAYLQ NKKYGRAQGILSDLIGVGYASDPVRYDYLQSLLEAGQNQAAALRLSQWYSEEPGNPWIVTAHARFLLSLGQDESARMILQ QYAEIYQPTTEIDELLRSTQPQRTPTAETVMVLGLRPEMPVNAGVVRGAASAGEAAGKQAMESSLSPRHWQMQAVAGYQM INNRVEGQGFNSLLSPEAGYVAGVAAETDNEGSAYSFVGRARTSWQTYKIPSGLQQNGDRSQAFDIAGGLQTLLAADWQL QMQLNYRSRSGIESATNTYVSGYQMLGVQAGVSKTWQLRFPWSFEVHADLTLPVYFTESTAESGQLRFGYFSSLQALAQY PLREGLAFRAGLGLVRNEIQFNGNGSRGVTDATDSEEGLMIPVSLTWVY
Sequences:
>Translated_529_residues MSYVLGLLLLCVVVQVSAASAPSSGSVEQLRIFLNQNPYDNNVRRHLIEKHLELHQSAEAHAEFASYKKLDPHLNVDGGN ALQMRLDMLDGKFGAAKHLALKLLTVPQLGAEDRYRAHLTLGDLAYVHFTSGDAVSRYKKALSVKPVPEAKHRLARAYLQ NKKYGRAQGILSDLIGVGYASDPVRYDYLQSLLEAGQNQAAALRLSQWYSEEPGNPWIVTAHARFLLSLGQDESARMILQ QYAEIYQPTTEIDELLRSTQPQRTPTAETVMVLGLRPEMPVNAGVVRGAASAGEAAGKQAMESSLSPRHWQMQAVAGYQM INNRVEGQGFNSLLSPEAGYVAGVAAETDNEGSAYSFVGRARTSWQTYKIPSGLQQNGDRSQAFDIAGGLQTLLAADWQL QMQLNYRSRSGIESATNTYVSGYQMLGVQAGVSKTWQLRFPWSFEVHADLTLPVYFTESTAESGQLRFGYFSSLQALAQY PLREGLAFRAGLGLVRNEIQFNGNGSRGVTDATDSEEGLMIPVSLTWVY >Mature_528_residues SYVLGLLLLCVVVQVSAASAPSSGSVEQLRIFLNQNPYDNNVRRHLIEKHLELHQSAEAHAEFASYKKLDPHLNVDGGNA LQMRLDMLDGKFGAAKHLALKLLTVPQLGAEDRYRAHLTLGDLAYVHFTSGDAVSRYKKALSVKPVPEAKHRLARAYLQN KKYGRAQGILSDLIGVGYASDPVRYDYLQSLLEAGQNQAAALRLSQWYSEEPGNPWIVTAHARFLLSLGQDESARMILQQ YAEIYQPTTEIDELLRSTQPQRTPTAETVMVLGLRPEMPVNAGVVRGAASAGEAAGKQAMESSLSPRHWQMQAVAGYQMI NNRVEGQGFNSLLSPEAGYVAGVAAETDNEGSAYSFVGRARTSWQTYKIPSGLQQNGDRSQAFDIAGGLQTLLAADWQLQ MQLNYRSRSGIESATNTYVSGYQMLGVQAGVSKTWQLRFPWSFEVHADLTLPVYFTESTAESGQLRFGYFSSLQALAQYP LREGLAFRAGLGLVRNEIQFNGNGSRGVTDATDSEEGLMIPVSLTWVY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58191; Mature: 58060
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYVLGLLLLCVVVQVSAASAPSSGSVEQLRIFLNQNPYDNNVRRHLIEKHLELHQSAEA CHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH HAEFASYKKLDPHLNVDGGNALQMRLDMLDGKFGAAKHLALKLLTVPQLGAEDRYRAHLT HHHHHHHHCCCCCCCCCCCCEEEEEEEHHCCCCCHHHHHHEEEEECCCCCCCCCEEEEEE LGDLAYVHFTSGDAVSRYKKALSVKPVPEAKHRLARAYLQNKKYGRAQGILSDLIGVGYA ECCEEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC SDPVRYDYLQSLLEAGQNQAAALRLSQWYSEEPGNPWIVTAHARFLLSLGQDESARMILQ CCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCHHHHHHHH QYAEIYQPTTEIDELLRSTQPQRTPTAETVMVLGLRPEMPVNAGVVRGAASAGEAAGKQA HHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHH MESSLSPRHWQMQAVAGYQMINNRVEGQGFNSLLSPEAGYVAGVAAETDNEGSAYSFVGR HHHCCCCCCEEHHHHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEEECCCCCCCEEEEHHC ARTSWQTYKIPSGLQQNGDRSQAFDIAGGLQTLLAADWQLQMQLNYRSRSGIESATNTYV CCCCCEEEECCCCHHCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHH SGYQMLGVQAGVSKTWQLRFPWSFEVHADLTLPVYFTESTAESGQLRFGYFSSLQALAQY CCHHEEEEECCCCCEEEEECCEEEEEEECEEEEEEEECCCCCCCCEEEHHHHHHHHHHHC PLREGLAFRAGLGLVRNEIQFNGNGSRGVTDATDSEEGLMIPVSLTWVY HHHHCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEC >Mature Secondary Structure SYVLGLLLLCVVVQVSAASAPSSGSVEQLRIFLNQNPYDNNVRRHLIEKHLELHQSAEA HHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH HAEFASYKKLDPHLNVDGGNALQMRLDMLDGKFGAAKHLALKLLTVPQLGAEDRYRAHLT HHHHHHHHCCCCCCCCCCCCEEEEEEEHHCCCCCHHHHHHEEEEECCCCCCCCCEEEEEE LGDLAYVHFTSGDAVSRYKKALSVKPVPEAKHRLARAYLQNKKYGRAQGILSDLIGVGYA ECCEEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC SDPVRYDYLQSLLEAGQNQAAALRLSQWYSEEPGNPWIVTAHARFLLSLGQDESARMILQ CCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCHHHHHHHH QYAEIYQPTTEIDELLRSTQPQRTPTAETVMVLGLRPEMPVNAGVVRGAASAGEAAGKQA HHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHH MESSLSPRHWQMQAVAGYQMINNRVEGQGFNSLLSPEAGYVAGVAAETDNEGSAYSFVGR HHHCCCCCCEEHHHHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEEECCCCCCCEEEEHHC ARTSWQTYKIPSGLQQNGDRSQAFDIAGGLQTLLAADWQLQMQLNYRSRSGIESATNTYV CCCCCEEEECCCCHHCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHH SGYQMLGVQAGVSKTWQLRFPWSFEVHADLTLPVYFTESTAESGQLRFGYFSSLQALAQY CCHHEEEEECCCCCEEEEECCEEEEEEECEEEEEEEECCCCCCCCEEEHHHHHHHHHHHC PLREGLAFRAGLGLVRNEIQFNGNGSRGVTDATDSEEGLMIPVSLTWVY HHHHCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA