Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

Click here to switch to the map view.

The map label for this gene is 42522534

Identifier: 42522534

GI number: 42522534

Start: 917363

End: 920092

Strand: Direct

Name: 42522534

Synonym: Bd0970

Alternate gene names: NA

Gene position: 917363-920092 (Clockwise)

Preceding gene: 42522533

Following gene: 42522535

Centisome position: 24.25

GC content: 54.87

Gene sequence:

>2730_bases
GTGTTGAAATATGTTTTGATGGCCTGTCTTTTTCTGAGTGCCTGCAATTTTTCTGAAGAGTCTAAAGTCACAGGAAACAC
TCCGCAAAGCACTCCGGAGACTGATCCTGCGCCAGGAAGTTCCGCGCCGTCTTGGGTGGATGTGCGTGCGTTGGTATCAA
CAGGTGAAAACCTCAGCTTCAACAATCAAACCGGCGGGCCCCACGATCTGGCTTTGAACCCGTTAACGGGGCAACCGGGT
GTGGCATACTATGATAAGTCCGCGACGGCGGGGGGCAGTGGTGCAACCCCGACGATAGGCGCACTGAAGTACGCCTGGAT
GGATGAGTTTGGCACCTGGAATGTGGAAGTCGTCGATCTCAACTATGGAACAGCCCTCTGCGGAAATTTGAATTCAGTTT
GCGTTGGTGCGCCGAACTCGGCTACCGCCGGGCAGTTGAATCAGGGAAAAATTCTGCGGGTGGCATTTAAGTCCGACGGC
AACCCCGTCATCGCCTATGTATATGGATCAAGCCAGAACACCACTTTGCTTGCCGGAAGCGGGACCAAGGACATTCGATT
TGCCGAGCGCAGTTCCAGTGGTGTTTGGTCGGTGACAACAGCTTTTCAAGCCCCGGTCAGTGCGGCACCCACAAATGTGG
CTGTGGCCACCATTGATCCGATGAAGGCACTTCGCCTGGTGCTGGACAGCGAGGACCGGCCTCACATCACTTTTTCATTC
TTCACTCAGACCTCCACAAACAGCCAGGTGAAATATCTTTTCCGTTCCAGCACGGGTGTGTGGTCTTCAATGAACGTGGC
GCCACTGGTGTCGCTGGCGGGGACTATCACGGCGGCCAATCAGGCCGGCATCAGTTCAGGGCTGGCGTTGTGCCCGGTGA
ACGGAGCGCCGATCCTGGGTTTCACCACGACAACGGGGGCGGCGGGGACTTTGAACAACCCTTCAGTGGCAAGATGCACG
GGATTGGATGCGGATGGAAAATGTCAGGCCTTTGAAGTTGTGAATCTTTTGCGGGGGTGTGCGGGCAGCACTACTTGTAT
TTCCGGTTTGGTGAATACGAATCATAACGGTGGAACACATCTGGATTTGAAAGTCGAGCCCACCACCCATCGTGCGGTGT
TGGCATTTTATTCTGTGGGCAATCCGAACACCACAGGCCTGCATATTCGCAGCCCCGTGGCCTGTGATGTGGCTCAGGAT
GGGGCCACCAACTCTTGGGGGCCAGCGACCACCATTGCGGCGGCTTCCACAGGGGCTTCCGGAATCTCTTTGGCTATTAA
AGGTGTGACAGACTATCTGGTTTCTGCCGGAGTGGCGACCACGTCGGTAGCCATGAGCAAATTCAACGGCACAGCCTGGT
TTGCGGCGAATCACGGGATTGAAACAACGACGGTCGCGCAAGAAGGGGTGTCACTTGCTTATGATGCTGCCAGCGACACA
GCTTTCACCAGCTATGCCCAGCTTCCCGCCGCGGCAGGTGGCGCTGTCGGCAATGACCTGAAGGTCGCGCAGATTGATCC
GGATGACCTGGTGACAGGGGGAGCCGCAGGAAGCTTCGTAATTTCTGTGGTCGACAACCGTGGCAATGTGTTTCCGAACA
CGGCCTCTTTCCCGGTGATCAGTGCCGCCAAGGCACCGGATGGCAGAGTCGGCTATGCATACTATTTTTATGACAACAAC
AACACTCACGCCAGTTCCAAACTTTATTTCGGAACACGCGGGGGCACATTTGTAGAGCCGTATTTCTCTGAAAAATTTGT
GACCAGCCATCAACAAAGCACTTCGGCCACGGCGGCGGTGGGAAATATGCCGTCATTGGCCTTCGACAGTAACAGCAATC
CGATGATTGCCGCCTACAATGGTGTGGCGACTGAGCAGAATCTGATTCTGGCCAGATCCAGTGATCGAGGTGTGAGTTTT
ACAATCACGGTCGTGGATGATTCCGTAGCCAACGTCGGTCAGTACGCAAGTGTCGCCCTGAGTGGTGATGCCATCGGAAT
CGCGTATTATGATGTCACCAACACGGCCTTGCGTTTTGCCAGATGGACAAAACAAAAAGGCTGGAAAAGATTTGTCGTGG
ACGGCGCCGCGGGAGCGGGCTCTTGCGGTAATGCCACTGCGGATGCGGGGAAATTTGCGAAGCTCCAGTTTACGAGTTCT
GGACAGCCTGCGATTGCCTATCAGTACGACACAGGGGTGCGAGTGGCTTTCGCCAGTGAATCGCTAAGTTCCGCCAGCTA
TGTGTGGAATTGTGTGGCGATTGAAAATTCCGGATCCACTTTGGGTGCGGGAATTGATTTCAAACTGGATGCTTTGAACA
GGCCTTTTGCGGTTTATGTGGATATAACGGCGGGTTCAGTTCGCTATGCAAGTTGTGCTTCGGCCGTTGCAACATGTTTG
ACCACCGGGACTAGTGCGTTCACGGCCGGTGTCGTGGAGGTGACTGGGGTGACCTCTTTGTTGGGTGAGTCTGCGCCGAC
GTTGGGGGTAGGCAGTGATGGAGCCAAATACGTGGCCTTCCATAGCTCAGTCAGTAAGGCCTTGCGTCTGGGGACCCTGG
CTGCGGCAGGCGGCAGTTTTGTCTTTGAAAGCATTGAACAATCAGTCCTGCCGGTGCCCTCATTTGTGGGGCAGTACGGG
GCGCTTTTGATTAATTCCTACGACCGCCCGACGGTCTTTTATCGCAGCTCAGAAAACTGGCTGCGCTACTATTCCCGCGA
GCAGGAATAG

Upstream 100 bases:

>100_bases
GTTCAATGGCAATGGGTCCCGCGGTGTGACCGATGCCACAGATTCCGAAGAAGGTTTGATGATTCCAGTCAGTCTTACGT
GGGTTTATTAGGGGGACGTT

Downstream 100 bases:

>100_bases
CCAACTGCCTAAAGAGGGGGCATATTGTGTGCCCCTGAGGTCTTAAACCCCTTTAAAATTGATTTGAAGAGACTTCTCAC
CGTGGCAAATGGGCGTGACA

Product: putative secreted esterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 909; Mature: 909

Protein sequence:

>909_residues
MLKYVLMACLFLSACNFSEESKVTGNTPQSTPETDPAPGSSAPSWVDVRALVSTGENLSFNNQTGGPHDLALNPLTGQPG
VAYYDKSATAGGSGATPTIGALKYAWMDEFGTWNVEVVDLNYGTALCGNLNSVCVGAPNSATAGQLNQGKILRVAFKSDG
NPVIAYVYGSSQNTTLLAGSGTKDIRFAERSSSGVWSVTTAFQAPVSAAPTNVAVATIDPMKALRLVLDSEDRPHITFSF
FTQTSTNSQVKYLFRSSTGVWSSMNVAPLVSLAGTITAANQAGISSGLALCPVNGAPILGFTTTTGAAGTLNNPSVARCT
GLDADGKCQAFEVVNLLRGCAGSTTCISGLVNTNHNGGTHLDLKVEPTTHRAVLAFYSVGNPNTTGLHIRSPVACDVAQD
GATNSWGPATTIAAASTGASGISLAIKGVTDYLVSAGVATTSVAMSKFNGTAWFAANHGIETTTVAQEGVSLAYDAASDT
AFTSYAQLPAAAGGAVGNDLKVAQIDPDDLVTGGAAGSFVISVVDNRGNVFPNTASFPVISAAKAPDGRVGYAYYFYDNN
NTHASSKLYFGTRGGTFVEPYFSEKFVTSHQQSTSATAAVGNMPSLAFDSNSNPMIAAYNGVATEQNLILARSSDRGVSF
TITVVDDSVANVGQYASVALSGDAIGIAYYDVTNTALRFARWTKQKGWKRFVVDGAAGAGSCGNATADAGKFAKLQFTSS
GQPAIAYQYDTGVRVAFASESLSSASYVWNCVAIENSGSTLGAGIDFKLDALNRPFAVYVDITAGSVRYASCASAVATCL
TTGTSAFTAGVVEVTGVTSLLGESAPTLGVGSDGAKYVAFHSSVSKALRLGTLAAAGGSFVFESIEQSVLPVPSFVGQYG
ALLINSYDRPTVFYRSSENWLRYYSREQE

Sequences:

>Translated_909_residues
MLKYVLMACLFLSACNFSEESKVTGNTPQSTPETDPAPGSSAPSWVDVRALVSTGENLSFNNQTGGPHDLALNPLTGQPG
VAYYDKSATAGGSGATPTIGALKYAWMDEFGTWNVEVVDLNYGTALCGNLNSVCVGAPNSATAGQLNQGKILRVAFKSDG
NPVIAYVYGSSQNTTLLAGSGTKDIRFAERSSSGVWSVTTAFQAPVSAAPTNVAVATIDPMKALRLVLDSEDRPHITFSF
FTQTSTNSQVKYLFRSSTGVWSSMNVAPLVSLAGTITAANQAGISSGLALCPVNGAPILGFTTTTGAAGTLNNPSVARCT
GLDADGKCQAFEVVNLLRGCAGSTTCISGLVNTNHNGGTHLDLKVEPTTHRAVLAFYSVGNPNTTGLHIRSPVACDVAQD
GATNSWGPATTIAAASTGASGISLAIKGVTDYLVSAGVATTSVAMSKFNGTAWFAANHGIETTTVAQEGVSLAYDAASDT
AFTSYAQLPAAAGGAVGNDLKVAQIDPDDLVTGGAAGSFVISVVDNRGNVFPNTASFPVISAAKAPDGRVGYAYYFYDNN
NTHASSKLYFGTRGGTFVEPYFSEKFVTSHQQSTSATAAVGNMPSLAFDSNSNPMIAAYNGVATEQNLILARSSDRGVSF
TITVVDDSVANVGQYASVALSGDAIGIAYYDVTNTALRFARWTKQKGWKRFVVDGAAGAGSCGNATADAGKFAKLQFTSS
GQPAIAYQYDTGVRVAFASESLSSASYVWNCVAIENSGSTLGAGIDFKLDALNRPFAVYVDITAGSVRYASCASAVATCL
TTGTSAFTAGVVEVTGVTSLLGESAPTLGVGSDGAKYVAFHSSVSKALRLGTLAAAGGSFVFESIEQSVLPVPSFVGQYG
ALLINSYDRPTVFYRSSENWLRYYSREQE
>Mature_909_residues
MLKYVLMACLFLSACNFSEESKVTGNTPQSTPETDPAPGSSAPSWVDVRALVSTGENLSFNNQTGGPHDLALNPLTGQPG
VAYYDKSATAGGSGATPTIGALKYAWMDEFGTWNVEVVDLNYGTALCGNLNSVCVGAPNSATAGQLNQGKILRVAFKSDG
NPVIAYVYGSSQNTTLLAGSGTKDIRFAERSSSGVWSVTTAFQAPVSAAPTNVAVATIDPMKALRLVLDSEDRPHITFSF
FTQTSTNSQVKYLFRSSTGVWSSMNVAPLVSLAGTITAANQAGISSGLALCPVNGAPILGFTTTTGAAGTLNNPSVARCT
GLDADGKCQAFEVVNLLRGCAGSTTCISGLVNTNHNGGTHLDLKVEPTTHRAVLAFYSVGNPNTTGLHIRSPVACDVAQD
GATNSWGPATTIAAASTGASGISLAIKGVTDYLVSAGVATTSVAMSKFNGTAWFAANHGIETTTVAQEGVSLAYDAASDT
AFTSYAQLPAAAGGAVGNDLKVAQIDPDDLVTGGAAGSFVISVVDNRGNVFPNTASFPVISAAKAPDGRVGYAYYFYDNN
NTHASSKLYFGTRGGTFVEPYFSEKFVTSHQQSTSATAAVGNMPSLAFDSNSNPMIAAYNGVATEQNLILARSSDRGVSF
TITVVDDSVANVGQYASVALSGDAIGIAYYDVTNTALRFARWTKQKGWKRFVVDGAAGAGSCGNATADAGKFAKLQFTSS
GQPAIAYQYDTGVRVAFASESLSSASYVWNCVAIENSGSTLGAGIDFKLDALNRPFAVYVDITAGSVRYASCASAVATCL
TTGTSAFTAGVVEVTGVTSLLGESAPTLGVGSDGAKYVAFHSSVSKALRLGTLAAAGGSFVFESIEQSVLPVPSFVGQYG
ALLINSYDRPTVFYRSSENWLRYYSREQE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 93967; Mature: 93967

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKYVLMACLFLSACNFSEESKVTGNTPQSTPETDPAPGSSAPSWVDVRALVSTGENLSF
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHCCCCCEE
NNQTGGPHDLALNPLTGQPGVAYYDKSATAGGSGATPTIGALKYAWMDEFGTWNVEVVDL
CCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCHHHEEEEEHHCCCCEEEEEEEE
NYGTALCGNLNSVCVGAPNSATAGQLNQGKILRVAFKSDGNPVIAYVYGSSQNTTLLAGS
CCCCEECCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEECC
GTKDIRFAERSSSGVWSVTTAFQAPVSAAPTNVAVATIDPMKALRLVLDSEDRPHITFSF
CCCCEEEEECCCCCEEEEEEHHCCCCCCCCCCEEEEEECHHHHHHHHCCCCCCCEEEEEE
FTQTSTNSQVKYLFRSSTGVWSSMNVAPLVSLAGTITAANQAGISSGLALCPVNGAPILG
EEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHEEEECCCCCCCCCEEEEECCCCCEEE
FTTTTGAAGTLNNPSVARCTGLDADGKCQAFEVVNLLRGCAGSTTCISGLVNTNHNGGTH
EEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHCEECCCCCCEE
LDLKVEPTTHRAVLAFYSVGNPNTTGLHIRSPVACDVAQDGATNSWGPATTIAAASTGAS
EEEEECCCCCEEEEEEEECCCCCCCEEEECCCEEEECCCCCCCCCCCCCEEEEECCCCCC
GISLAIKGVTDYLVSAGVATTSVAMSKFNGTAWFAANHGIETTTVAQEGVSLAYDAASDT
CEEEEEECHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCEEEEHHCCCEEEEECCCCC
AFTSYAQLPAAAGGAVGNDLKVAQIDPDDLVTGGAAGSFVISVVDNRGNVFPNTASFPVI
HHHHHHHCCCCCCCCCCCCEEEEEECHHHHEECCCCCEEEEEEEECCCCCCCCCCCCCEE
SAAKAPDGRVGYAYYFYDNNNTHASSKLYFGTRGGTFVEPYFSEKFVTSHQQSTSATAAV
EECCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCEECCCCCCHHHHCCCCCCCCEEEC
GNMPSLAFDSNSNPMIAAYNGVATEQNLILARSSDRGVSFTITVVDDSVANVGQYASVAL
CCCCCEEECCCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECCCHHCCCCEEEEEE
SGDAIGIAYYDVTNTALRFARWTKQKGWKRFVVDGAAGAGSCGNATADAGKFAKLQFTSS
CCCEEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCC
GQPAIAYQYDTGVRVAFASESLSSASYVWNCVAIENSGSTLGAGIDFKLDALNRPFAVYV
CCCEEEEEECCCEEEEEECCCCCCCCEEEEEEEEECCCCEEECCCEEEEECCCCCEEEEE
DITAGSVRYASCASAVATCLTTGTSAFTAGVVEVTGVTSLLGESAPTLGVGSDGAKYVAF
EEECCCEEHHHHHHHHHHHHHCCCHHHHCCEEEECCHHHHHCCCCCCCCCCCCCCEEEEE
HSSVSKALRLGTLAAAGGSFVFESIEQSVLPVPSFVGQYGALLINSYDRPTVFYRSSENW
HHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCHHHHHCCCEEEEECCCCCEEEEECCCHH
LRYYSREQE
HHHHHCCCC
>Mature Secondary Structure
MLKYVLMACLFLSACNFSEESKVTGNTPQSTPETDPAPGSSAPSWVDVRALVSTGENLSF
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHCCCCCEE
NNQTGGPHDLALNPLTGQPGVAYYDKSATAGGSGATPTIGALKYAWMDEFGTWNVEVVDL
CCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCHHHEEEEEHHCCCCEEEEEEEE
NYGTALCGNLNSVCVGAPNSATAGQLNQGKILRVAFKSDGNPVIAYVYGSSQNTTLLAGS
CCCCEECCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEECC
GTKDIRFAERSSSGVWSVTTAFQAPVSAAPTNVAVATIDPMKALRLVLDSEDRPHITFSF
CCCCEEEEECCCCCEEEEEEHHCCCCCCCCCCEEEEEECHHHHHHHHCCCCCCCEEEEEE
FTQTSTNSQVKYLFRSSTGVWSSMNVAPLVSLAGTITAANQAGISSGLALCPVNGAPILG
EEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHEEEECCCCCCCCCEEEEECCCCCEEE
FTTTTGAAGTLNNPSVARCTGLDADGKCQAFEVVNLLRGCAGSTTCISGLVNTNHNGGTH
EEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHCEECCCCCCEE
LDLKVEPTTHRAVLAFYSVGNPNTTGLHIRSPVACDVAQDGATNSWGPATTIAAASTGAS
EEEEECCCCCEEEEEEEECCCCCCCEEEECCCEEEECCCCCCCCCCCCCEEEEECCCCCC
GISLAIKGVTDYLVSAGVATTSVAMSKFNGTAWFAANHGIETTTVAQEGVSLAYDAASDT
CEEEEEECHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCEEEEHHCCCEEEEECCCCC
AFTSYAQLPAAAGGAVGNDLKVAQIDPDDLVTGGAAGSFVISVVDNRGNVFPNTASFPVI
HHHHHHHCCCCCCCCCCCCEEEEEECHHHHEECCCCCEEEEEEEECCCCCCCCCCCCCEE
SAAKAPDGRVGYAYYFYDNNNTHASSKLYFGTRGGTFVEPYFSEKFVTSHQQSTSATAAV
EECCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCEECCCCCCHHHHCCCCCCCCEEEC
GNMPSLAFDSNSNPMIAAYNGVATEQNLILARSSDRGVSFTITVVDDSVANVGQYASVAL
CCCCCEEECCCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECCCHHCCCCEEEEEE
SGDAIGIAYYDVTNTALRFARWTKQKGWKRFVVDGAAGAGSCGNATADAGKFAKLQFTSS
CCCEEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCC
GQPAIAYQYDTGVRVAFASESLSSASYVWNCVAIENSGSTLGAGIDFKLDALNRPFAVYV
CCCEEEEEECCCEEEEEECCCCCCCCEEEEEEEEECCCCEEECCCEEEEECCCCCEEEEE
DITAGSVRYASCASAVATCLTTGTSAFTAGVVEVTGVTSLLGESAPTLGVGSDGAKYVAF
EEECCCEEHHHHHHHHHHHHHCCCHHHHCCEEEECCHHHHHCCCCCCCCCCCCCCEEEEE
HSSVSKALRLGTLAAAGGSFVFESIEQSVLPVPSFVGQYGALLINSYDRPTVFYRSSENW
HHHHHHHHHHHHEEECCCHHHHHHHHHHCCCCHHHHHCCCEEEEECCCCCEEEEECCCHH
LRYYSREQE
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA