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The map label for this gene is ycbY [C]

Identifier: 42522513

GI number: 42522513

Start: 894600

End: 895724

Strand: Direct

Name: ycbY [C]

Synonym: Bd0946

Alternate gene names: 42522513

Gene position: 894600-895724 (Clockwise)

Preceding gene: 42522512

Following gene: 42522514

Centisome position: 23.65

GC content: 48.98

Gene sequence:

>1125_bases
ATGCCTCAGTTTTTTGCCTCCACAGCCCGTGGACTTGTTGAACCCCTGGAACTAGAATTAAAAGAGCTTGGCCTGAAGGT
CACAGACCGCTACATCGGTGGTGTGTTCTTCGAAAGCAACTGGGAAGGCTGCTATAAAGCGAACCTGCATTCCCGTTTGG
CCAGCCGTATTTTGAAGCCTGTCCTGGATTTCACGGCTTATCAGCCGGAAGAGCTGTACAGTCAGATTCTTCGTCACGAT
TTCACCAAATACATCAAGCCGACTCAGACGATCTCCATCGACGCCAGCGTCAATGAATCCAAAATGCGTGATCAGCGTTT
TGTAGCGATGAAAGTCAAAGACGCTATCGTGGATCAATTCCGCGAAAAGTTTGGTGTGCGCCCGGATGTGGATAACACCA
ACCCGGACCTGCGTATTCACGTGCGCGCGATCAAAAATCAATTCAATGTGGCCATCGACACGTCCGGTGACAGCTTGTTC
AAGCGTGGTTATCGCAAAGAAGTCGGCGAAGCTCCATTGAAAGAAAACCTGGCAGCGGGTCTGCTGCGTTTGTCCGAGTG
GGACCGCCAAAGCCCGCTGGTGGATTTCATGTGCGGTTCTGGAACTTTCCTGATTGAGGCGGCGATGATGTCCATGAACA
TCGCTCCGGGTATCAACCGCAAAGGTTTTGGTTTCCAGAACTGGTTGAACTATGAAGAAGAAACCTGGGAAAAAGTGATC
CAGGAAGCCATGGATGCAGAAAAAGAGGAACTTGATTTCAAGTTCTATGGCTTTGATATCGACAAACGCGTTTTGATGAA
CGCGAAAGACAACGCCAAACGTGCCGGTGTTGATGAAGTTATCGAATTCAAAAAAGAATCTGTGGCGACAGTGGAGCCTC
CAGTTGAAAAAGGTCTGATCATCGTGAATCCGCCGTATGGCGCGCGTATCGGTGATGAAGACAACTTGCGTGACGTGTAC
CGTGATCTGAGCTTCACCATGAAGCACAGATTCAAAGGCTGGGATGCGTGGATCCTTTCCGGCAACAAAGAGCTGATTGC
GGATTTGAAGTTGAAATCCACACGCAAGCACTTTGTGTTCAATGGAAACATTGAGTGCCGCTTCCTGAAATATTCTATGT
TCTAG

Upstream 100 bases:

>100_bases
AGTGGACCGTTCCTGAAGGGGGCGGTGGACCACAATACCGCGAAACATAGGAAGCCTGGCGTTGGGACTGGGCTTTCTTA
ACAAAGGAAAGGTCAGTCTC

Downstream 100 bases:

>100_bases
TGAAAAACGGGGGATATATGAAGCTGCTTTTGGCTATGACAATGATGCTTTTGCCGGTTTCGGCGATGGCGGGTTTGACT
TCAAAGGATGTCTTTCAAAA

Product: putative N6-adenine-specific DNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MPQFFASTARGLVEPLELELKELGLKVTDRYIGGVFFESNWEGCYKANLHSRLASRILKPVLDFTAYQPEELYSQILRHD
FTKYIKPTQTISIDASVNESKMRDQRFVAMKVKDAIVDQFREKFGVRPDVDNTNPDLRIHVRAIKNQFNVAIDTSGDSLF
KRGYRKEVGEAPLKENLAAGLLRLSEWDRQSPLVDFMCGSGTFLIEAAMMSMNIAPGINRKGFGFQNWLNYEEETWEKVI
QEAMDAEKEELDFKFYGFDIDKRVLMNAKDNAKRAGVDEVIEFKKESVATVEPPVEKGLIIVNPPYGARIGDEDNLRDVY
RDLSFTMKHRFKGWDAWILSGNKELIADLKLKSTRKHFVFNGNIECRFLKYSMF

Sequences:

>Translated_374_residues
MPQFFASTARGLVEPLELELKELGLKVTDRYIGGVFFESNWEGCYKANLHSRLASRILKPVLDFTAYQPEELYSQILRHD
FTKYIKPTQTISIDASVNESKMRDQRFVAMKVKDAIVDQFREKFGVRPDVDNTNPDLRIHVRAIKNQFNVAIDTSGDSLF
KRGYRKEVGEAPLKENLAAGLLRLSEWDRQSPLVDFMCGSGTFLIEAAMMSMNIAPGINRKGFGFQNWLNYEEETWEKVI
QEAMDAEKEELDFKFYGFDIDKRVLMNAKDNAKRAGVDEVIEFKKESVATVEPPVEKGLIIVNPPYGARIGDEDNLRDVY
RDLSFTMKHRFKGWDAWILSGNKELIADLKLKSTRKHFVFNGNIECRFLKYSMF
>Mature_373_residues
PQFFASTARGLVEPLELELKELGLKVTDRYIGGVFFESNWEGCYKANLHSRLASRILKPVLDFTAYQPEELYSQILRHDF
TKYIKPTQTISIDASVNESKMRDQRFVAMKVKDAIVDQFREKFGVRPDVDNTNPDLRIHVRAIKNQFNVAIDTSGDSLFK
RGYRKEVGEAPLKENLAAGLLRLSEWDRQSPLVDFMCGSGTFLIEAAMMSMNIAPGINRKGFGFQNWLNYEEETWEKVIQ
EAMDAEKEELDFKFYGFDIDKRVLMNAKDNAKRAGVDEVIEFKKESVATVEPPVEKGLIIVNPPYGARIGDEDNLRDVYR
DLSFTMKHRFKGWDAWILSGNKELIADLKLKSTRKHFVFNGNIECRFLKYSMF

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=372, Percent_Identity=39.247311827957, Blast_Score=256, Evalue=1e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43122; Mature: 42991

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQFFASTARGLVEPLELELKELGLKVTDRYIGGVFFESNWEGCYKANLHSRLASRILKP
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHH
VLDFTAYQPEELYSQILRHDFTKYIKPTQTISIDASVNESKMRDQRFVAMKVKDAIVDQF
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
REKFGVRPDVDNTNPDLRIHVRAIKNQFNVAIDTSGDSLFKRGYRKEVGEAPLKENLAAG
HHHCCCCCCCCCCCCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHH
LLRLSEWDRQSPLVDFMCGSGTFLIEAAMMSMNIAPGINRKGFGFQNWLNYEEETWEKVI
HHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHHH
QEAMDAEKEELDFKFYGFDIDKRVLMNAKDNAKRAGVDEVIEFKKESVATVEPPVEKGLI
HHHHCCCHHHCCEEEEECCCCHHHEECCCCCCHHCCHHHHHHHHHHCCCCCCCCHHCCEE
IVNPPYGARIGDEDNLRDVYRDLSFTMKHRFKGWDAWILSGNKELIADLKLKSTRKHFVF
EECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHEEEHHHCCCCCEEEE
NGNIECRFLKYSMF
ECCEEEEEEEEECC
>Mature Secondary Structure 
PQFFASTARGLVEPLELELKELGLKVTDRYIGGVFFESNWEGCYKANLHSRLASRILKP
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHH
VLDFTAYQPEELYSQILRHDFTKYIKPTQTISIDASVNESKMRDQRFVAMKVKDAIVDQF
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
REKFGVRPDVDNTNPDLRIHVRAIKNQFNVAIDTSGDSLFKRGYRKEVGEAPLKENLAAG
HHHCCCCCCCCCCCCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHH
LLRLSEWDRQSPLVDFMCGSGTFLIEAAMMSMNIAPGINRKGFGFQNWLNYEEETWEKVI
HHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHHH
QEAMDAEKEELDFKFYGFDIDKRVLMNAKDNAKRAGVDEVIEFKKESVATVEPPVEKGLI
HHHHCCCHHHCCEEEEECCCCHHHEECCCCCCHHCCHHHHHHHHHHCCCCCCCCHHCCEE
IVNPPYGARIGDEDNLRDVYRDLSFTMKHRFKGWDAWILSGNKELIADLKLKSTRKHFVF
EECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHEEEHHHCCCCCEEEE
NGNIECRFLKYSMF
ECCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]