| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522289
Identifier: 42522289
GI number: 42522289
Start: 654583
End: 656169
Strand: Direct
Name: 42522289
Synonym: Bd0703
Alternate gene names: NA
Gene position: 654583-656169 (Clockwise)
Preceding gene: 42522288
Following gene: 42522290
Centisome position: 17.3
GC content: 52.55
Gene sequence:
>1587_bases ATGTTTTCCAAAAATTCTCGAGTGAAAATGGTCGCCGGAATGGTGACGGCAGTGACAGGGACAGCACTTTTAATTTCAGC TTGCAGTGGCGGGGGATCTAGCAGTCCTTCGGAAGACTCTGCATTGGTGATCAGCGGTGGTTTTTCAGGCGTCAGCTTGC AGTCTATGCAAAAGCCGATGGCAAAAGCCGGTGATCTGACGACCTTTGCGGCTTCGGATTACACCGTGATCTGCGCGATG ATGGTGGAACCTTTTACTGCGGGGCACAGTGCTCTTTCTGATGATGGAACTTTCTCTTTGTCCATCACGGGCGGTGCGGG TCAGCCGATTGGCTGTATGATTGTTAAATCAGGCAAGCGTGTTGCTGACTTCGAGTTCACTGCGGAAGAAGCCGGGATGA CGGGTGCGACCGGTGGTTCCGGCCTTGCCGTCAATCAAGGTGCGACGACCATTCAACTTCCGACGGATTTGTCCATCTCA GATGCCAAGGTGTCTGTGCCGGTGGCAAATATCACGCAGAACTCTTCAGTGGCTCCGTCCGTTGTTTGGGCCGATCCTAC GGGGACCTGGAGCATCACCGGTGCTTGTGAAACATCTTTGAATCAAAACGGTATTCCAGTGACAAGCTGTAACGGGGCCC AGAGCGCCGAAGACATTCCAACATCGGTTTATCTGAAGCAGTTGCAGGCGACCAAAGCAGGTGCCACTAAAACGGGTCTT TCTGTTTGGAAAGATGCCGCGGCTCGCACGGCGTGCGGTGATAAAGAGGGCATCACTCTTGATGGCGGCTGGACAGCGAC AGGCGGCTGGGCTGGTGCAATGACCGGCGGTGTGTCCATGGATATCAGTGACACCACGAAACTTGGCACACTGACGACAA AGGCCAAGGCCCGAATGCATCCTGATCATACCAACACCATGACTGCAGTTTGCGGTAAAACCACAAAAACGGGCGGCGGT GCGATCGTTTCCGGTACCACACTTTGCAGCGAAGTTGACTTCTCTGGCGGTGGCTGGGGCATGAGCGAAGACGCCTGCAA ACTTTATTGTGTGATGGGCGCATTGAGCAACGGCGGCGACAATCCAGACTTCGACTGGGGTGCTGCAACTTGCAAAAAAC GCTACAGAGTCTTCTGGGAAAACAACAACGAACTGTCTTCGGATAAAGACTACAACAATGGCAACGGCAATCAGGCCGGT GTTTTCGCTACAGGCACTTGTTCTGACACGTCCTTCGACGGATGCCGTGACACGGGTTCCGGCAAGGTTTTGTTCCAGAT GGAAAAAGCCCAGGACCAGTTCATGCTGGGTGAATTGTTCATCATCGGCAACGTGGGCACTGTGATGGAAAATCATCACT TCAATTCCACTTTCCCGAATGCAGACCGCACCGGCACGATCACTTGCGGTGGTACTTACATCGACAAGATGACCATGACC CAAATCAGTGCGACAACAGCGTCTGTGACAGTTGAGAATAACTTTGTAGCTGATCTTTCAAATCCGGCAGAGTGTGCGAC TAACGAACACTTCTCCAAAAACTCGGATGAAGAGCGCAGCATGACTTTGAAGCTGGTAAAACAGTAA
Upstream 100 bases:
>100_bases CAAAGGACTGCCCATCTTTACTGTTCTTTGTCAGTCTTTCAGAGCGATTAATGTGGATTAACTTCCAACAGAAAACTCAA TACGAAGGAAAGGACAGAGA
Downstream 100 bases:
>100_bases TCTGCACAATAGAAGGAAACTTCCTAAAAGCCCCCGCAGAAATGTCGGGGGCTTTTTTTATTCCATACATAAGTCTTGAA GTGCTTCACTTTGAAGCACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 528; Mature: 528
Protein sequence:
>528_residues MFSKNSRVKMVAGMVTAVTGTALLISACSGGGSSSPSEDSALVISGGFSGVSLQSMQKPMAKAGDLTTFAASDYTVICAM MVEPFTAGHSALSDDGTFSLSITGGAGQPIGCMIVKSGKRVADFEFTAEEAGMTGATGGSGLAVNQGATTIQLPTDLSIS DAKVSVPVANITQNSSVAPSVVWADPTGTWSITGACETSLNQNGIPVTSCNGAQSAEDIPTSVYLKQLQATKAGATKTGL SVWKDAAARTACGDKEGITLDGGWTATGGWAGAMTGGVSMDISDTTKLGTLTTKAKARMHPDHTNTMTAVCGKTTKTGGG AIVSGTTLCSEVDFSGGGWGMSEDACKLYCVMGALSNGGDNPDFDWGAATCKKRYRVFWENNNELSSDKDYNNGNGNQAG VFATGTCSDTSFDGCRDTGSGKVLFQMEKAQDQFMLGELFIIGNVGTVMENHHFNSTFPNADRTGTITCGGTYIDKMTMT QISATTASVTVENNFVADLSNPAECATNEHFSKNSDEERSMTLKLVKQ
Sequences:
>Translated_528_residues MFSKNSRVKMVAGMVTAVTGTALLISACSGGGSSSPSEDSALVISGGFSGVSLQSMQKPMAKAGDLTTFAASDYTVICAM MVEPFTAGHSALSDDGTFSLSITGGAGQPIGCMIVKSGKRVADFEFTAEEAGMTGATGGSGLAVNQGATTIQLPTDLSIS DAKVSVPVANITQNSSVAPSVVWADPTGTWSITGACETSLNQNGIPVTSCNGAQSAEDIPTSVYLKQLQATKAGATKTGL SVWKDAAARTACGDKEGITLDGGWTATGGWAGAMTGGVSMDISDTTKLGTLTTKAKARMHPDHTNTMTAVCGKTTKTGGG AIVSGTTLCSEVDFSGGGWGMSEDACKLYCVMGALSNGGDNPDFDWGAATCKKRYRVFWENNNELSSDKDYNNGNGNQAG VFATGTCSDTSFDGCRDTGSGKVLFQMEKAQDQFMLGELFIIGNVGTVMENHHFNSTFPNADRTGTITCGGTYIDKMTMT QISATTASVTVENNFVADLSNPAECATNEHFSKNSDEERSMTLKLVKQ >Mature_528_residues MFSKNSRVKMVAGMVTAVTGTALLISACSGGGSSSPSEDSALVISGGFSGVSLQSMQKPMAKAGDLTTFAASDYTVICAM MVEPFTAGHSALSDDGTFSLSITGGAGQPIGCMIVKSGKRVADFEFTAEEAGMTGATGGSGLAVNQGATTIQLPTDLSIS DAKVSVPVANITQNSSVAPSVVWADPTGTWSITGACETSLNQNGIPVTSCNGAQSAEDIPTSVYLKQLQATKAGATKTGL SVWKDAAARTACGDKEGITLDGGWTATGGWAGAMTGGVSMDISDTTKLGTLTTKAKARMHPDHTNTMTAVCGKTTKTGGG AIVSGTTLCSEVDFSGGGWGMSEDACKLYCVMGALSNGGDNPDFDWGAATCKKRYRVFWENNNELSSDKDYNNGNGNQAG VFATGTCSDTSFDGCRDTGSGKVLFQMEKAQDQFMLGELFIIGNVGTVMENHHFNSTFPNADRTGTITCGGTYIDKMTMT QISATTASVTVENNFVADLSNPAECATNEHFSKNSDEERSMTLKLVKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54517; Mature: 54517
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSKNSRVKMVAGMVTAVTGTALLISACSGGGSSSPSEDSALVISGGFSGVSLQSMQKPM CCCCCCCEEEEHHHHHHHHHHEEEEEECCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHH AKAGDLTTFAASDYTVICAMMVEPFTAGHSALSDDGTFSLSITGGAGQPIGCMIVKSGKR HHCCCEEEEECCCCEEEEEEHHCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCE VADFEFTAEEAGMTGATGGSGLAVNQGATTIQLPTDLSISDAKVSVPVANITQNSSVAPS EEEEEEEHHHCCCCCCCCCCCEEEECCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCE VVWADPTGTWSITGACETSLNQNGIPVTSCNGAQSAEDIPTSVYLKQLQATKAGATKTGL EEEECCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH SVWKDAAARTACGDKEGITLDGGWTATGGWAGAMTGGVSMDISDTTKLGTLTTKAKARMH HHHHHHHHHHCCCCCCCEEECCCEEECCCCCHHCCCCEEEECCCCCEECEEEECHHHEEC PDHTNTMTAVCGKTTKTGGGAIVSGTTLCSEVDFSGGGWGMSEDACKLYCVMGALSNGGD CCCCCCEEEECCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCEEEEEEEEHHCCCCC NPDFDWGAATCKKRYRVFWENNNELSSDKDYNNGNGNQAGVFATGTCSDTSFDGCRDTGS CCCCCCHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC GKVLFQMEKAQDQFMLGELFIIGNVGTVMENHHFNSTFPNADRTGTITCGGTYIDKMTMT CEEEEEEECCCCCEEEEEEEEEECCHHHHCCCCCCCCCCCCCCCEEEEECCEEECCEEEE QISATTASVTVENNFVADLSNPAECATNEHFSKNSDEERSMTLKLVKQ EEEEEEEEEEEECCEEEECCCCHHHCCCCCCCCCCCHHHEEEEEEECC >Mature Secondary Structure MFSKNSRVKMVAGMVTAVTGTALLISACSGGGSSSPSEDSALVISGGFSGVSLQSMQKPM CCCCCCCEEEEHHHHHHHHHHEEEEEECCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHH AKAGDLTTFAASDYTVICAMMVEPFTAGHSALSDDGTFSLSITGGAGQPIGCMIVKSGKR HHCCCEEEEECCCCEEEEEEHHCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCE VADFEFTAEEAGMTGATGGSGLAVNQGATTIQLPTDLSISDAKVSVPVANITQNSSVAPS EEEEEEEHHHCCCCCCCCCCCEEEECCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCE VVWADPTGTWSITGACETSLNQNGIPVTSCNGAQSAEDIPTSVYLKQLQATKAGATKTGL EEEECCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH SVWKDAAARTACGDKEGITLDGGWTATGGWAGAMTGGVSMDISDTTKLGTLTTKAKARMH HHHHHHHHHHCCCCCCCEEECCCEEECCCCCHHCCCCEEEECCCCCEECEEEECHHHEEC PDHTNTMTAVCGKTTKTGGGAIVSGTTLCSEVDFSGGGWGMSEDACKLYCVMGALSNGGD CCCCCCEEEECCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCEEEEEEEEHHCCCCC NPDFDWGAATCKKRYRVFWENNNELSSDKDYNNGNGNQAGVFATGTCSDTSFDGCRDTGS CCCCCCHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC GKVLFQMEKAQDQFMLGELFIIGNVGTVMENHHFNSTFPNADRTGTITCGGTYIDKMTMT CEEEEEEECCCCCEEEEEEEEEECCHHHHCCCCCCCCCCCCCCCEEEEECCEEECCEEEE QISATTASVTVENNFVADLSNPAECATNEHFSKNSDEERSMTLKLVKQ EEEEEEEEEEEECCEEEECCCCHHHCCCCCCCCCCCHHHEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA