| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is 42522219
Identifier: 42522219
GI number: 42522219
Start: 585679
End: 586476
Strand: Direct
Name: 42522219
Synonym: Bd0629
Alternate gene names: NA
Gene position: 585679-586476 (Clockwise)
Preceding gene: 42522218
Following gene: 42522223
Centisome position: 15.48
GC content: 51.5
Gene sequence:
>798_bases ATGAACAAAGCATTACTATTGGTTTCTTCCCTTTTCCTGATGGCTGCTTGTGCGCCACAGAACTCCCCGAATCTGACCGT AGCTGATAACGCAGCTATCGTAGGTGGTGACAAGGTTGAAGCTGCCAGCAACATCGGTCGCAGCACCGTGGGCATCTATG AATCCAAAATCGGTTACATCTGTTCTGGAACTTTGATTGCAAAAAATCTGGTTCTGACCGCGGCTCACTGTGTGGATCCC AACGCGAAAGACCTGGCGATCTACTTTACTGCTGAAATGAAGAAAGCCAGCAAAGAACAAATCCGCCGCGTGACTGGTCA GGTTGTGCATGATGGTTACACGGGTGCGGTTCAAACCAAAGACACCAACGACATCGCGGTTCTGCGCTTTGAAGGCGAAG CTCCAGCGGGTTACACTGTGGCGCCAATCTTGTTTGAACAAGGTCACCTGAACAACGACGTAAAAACGATCGTTGCCGGT TATGGCTTGAACTGGACAATTGTGATGAGCAAGGGTGCGGGCACTCTGCGCACGACAAGACTTTCCATCGACGATATCAA TTTTTCCAGAACCGAAGTGATGCTGGGTCAGTCCCTGCGTAAAGGGATCTGCAGCGGTGACTCCGGTGGTCCGGCGTACC TTGAAATCAACGGCCGTCTGCATGTGTGGGGTGTGGCAAGTCGCGGAGACTCTTTGCCGGGTCTATTGACTCCGAAGTGC ATGCTGTTCTCGGTATTCACTCGTGTGGATGCTCATCAGACATTCATTCAAGATGCTGTAGCGGAACTGTCCCGCTAG
Upstream 100 bases:
>100_bases ATCGGCCCTTTCAGACAAAAAACCCACAAAAGTGTCAACCAATACGCTGGAGTATCCAGGCCCTGTGTAATAAACCTCCG CCCATACAAACGGAGGCTTT
Downstream 100 bases:
>100_bases AGAATACAAAGAAGATCGACGAAGGCTAAAGATGAATTGTCTTTAGCCTTTGAGTATCCAGGCGCTCAAGTTCGCCTGCA TTGCCTTCTCGAAGGACATG
Product: trypsin
Products: NA
Alternate protein names: Trypsin; Serine Protease; Phosphotrypsin; Protease; Trypsin-Like Serine Protease Family Protein; Secreted Trypsin-Like Serine Protease
Number of amino acids: Translated: 265; Mature: 265
Protein sequence:
>265_residues MNKALLLVSSLFLMAACAPQNSPNLTVADNAAIVGGDKVEAASNIGRSTVGIYESKIGYICSGTLIAKNLVLTAAHCVDP NAKDLAIYFTAEMKKASKEQIRRVTGQVVHDGYTGAVQTKDTNDIAVLRFEGEAPAGYTVAPILFEQGHLNNDVKTIVAG YGLNWTIVMSKGAGTLRTTRLSIDDINFSRTEVMLGQSLRKGICSGDSGGPAYLEINGRLHVWGVASRGDSLPGLLTPKC MLFSVFTRVDAHQTFIQDAVAELSR
Sequences:
>Translated_265_residues MNKALLLVSSLFLMAACAPQNSPNLTVADNAAIVGGDKVEAASNIGRSTVGIYESKIGYICSGTLIAKNLVLTAAHCVDP NAKDLAIYFTAEMKKASKEQIRRVTGQVVHDGYTGAVQTKDTNDIAVLRFEGEAPAGYTVAPILFEQGHLNNDVKTIVAG YGLNWTIVMSKGAGTLRTTRLSIDDINFSRTEVMLGQSLRKGICSGDSGGPAYLEINGRLHVWGVASRGDSLPGLLTPKC MLFSVFTRVDAHQTFIQDAVAELSR >Mature_265_residues MNKALLLVSSLFLMAACAPQNSPNLTVADNAAIVGGDKVEAASNIGRSTVGIYESKIGYICSGTLIAKNLVLTAAHCVDP NAKDLAIYFTAEMKKASKEQIRRVTGQVVHDGYTGAVQTKDTNDIAVLRFEGEAPAGYTVAPILFEQGHLNNDVKTIVAG YGLNWTIVMSKGAGTLRTTRLSIDDINFSRTEVMLGQSLRKGICSGDSGGPAYLEINGRLHVWGVASRGDSLPGLLTPKC MLFSVFTRVDAHQTFIQDAVAELSR
Specific function: Unknown
COG id: COG5640
COG function: function code O; Secreted trypsin-like serine protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI58331209, Length=250, Percent_Identity=28.8, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24581698, Length=251, Percent_Identity=28.6852589641434, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28266; Mature: 28266
Theoretical pI: Translated: 7.89; Mature: 7.89
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00134 TRYPSIN_HIS ; PS50240 TRYPSIN_DOM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKALLLVSSLFLMAACAPQNSPNLTVADNAAIVGGDKVEAASNIGRSTVGIYESKIGYI CCHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEECCCCHHHHHHCCCCEEEEECCCCCEE CSGTLIAKNLVLTAAHCVDPNAKDLAIYFTAEMKKASKEQIRRVTGQVVHDGYTGAVQTK EECHHHHHHHHEEHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHEECCCCCEEEEC DTNDIAVLRFEGEAPAGYTVAPILFEQGHLNNDVKTIVAGYGLNWTIVMSKGAGTLRTTR CCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCHHEEEECCCCEEEEEEECCCCEEEEEE LSIDDINFSRTEVMLGQSLRKGICSGDSGGPAYLEINGRLHVWGVASRGDSLPGLLTPKC EEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCHHH MLFSVFTRVDAHQTFIQDAVAELSR HHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNKALLLVSSLFLMAACAPQNSPNLTVADNAAIVGGDKVEAASNIGRSTVGIYESKIGYI CCHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEECCCCHHHHHHCCCCEEEEECCCCCEE CSGTLIAKNLVLTAAHCVDPNAKDLAIYFTAEMKKASKEQIRRVTGQVVHDGYTGAVQTK EECHHHHHHHHEEHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHEECCCCCEEEEC DTNDIAVLRFEGEAPAGYTVAPILFEQGHLNNDVKTIVAGYGLNWTIVMSKGAGTLRTTR CCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCHHEEEECCCCEEEEEEECCCCEEEEEE LSIDDINFSRTEVMLGQSLRKGICSGDSGGPAYLEINGRLHVWGVASRGDSLPGLLTPKC EEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCHHH MLFSVFTRVDAHQTFIQDAVAELSR HHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA