| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is menA [H]
Identifier: 42522146
GI number: 42522146
Start: 507638
End: 508537
Strand: Direct
Name: menA [H]
Synonym: Bd0546
Alternate gene names: 42522146
Gene position: 507638-508537 (Clockwise)
Preceding gene: 42522143
Following gene: 42522147
Centisome position: 13.42
GC content: 52.0
Gene sequence:
>900_bases ATGCGATGCAAAATGACCTCTGCGACCCAGATTAAAAGTATTCTTCTCGCTTTTCGCCCCAAAACTTTGACTGCTGCCCT GGTGCCCTGTGTGGCGGGGACGGCTCTGGTAAAGGCTATCGGTCTTTCCTGGGATGGCTGGGTTTTGTTTTACGCATTGA TGGCCTCCTTCCTGATTCAGATCGGGACCAATCTGGTGAATGATGCCGTGGACTTTAAAAAGGGTGCGGATACGGAAAAA CGCATCGGTCCTCAGCGTATCACCCAAGCCGGCATTTTGACGGCCAATCAGGTGATGCTGCTGGGTTCGCTTTGTTTCGC CTTGGCTGTGATGTGCGGGATCCCGCTGGTGCTGAAAGGCGGCTGGGTGATTGTGGCCATTGGTGTGGCTTCGGTTCTGA TGGGGTATTCCTACACCGCCGGTCCGTTCCCGTTGGCTTACCTGGGATTGGGCGATCTGTTTGTCATTATCTTTTTTGGT TTGTTGGCCGTGACGGGGATTGTGTTCCTGAACACCGGTGAGTGGCTGTCCGAGGCGTTTGTATTGGGCCTGCAGATCGG TTTGCACGCGACAGTGCTGATTGCGATCAACAACTTGCGCGATCATGCCGGTGATCGTCTGGTGAACAAAAAAACCCTGG CGGTGCGTTTTGGTGTGAAATTCTCTCGCTGGGAAATTGCGGCCTTGGCATTCCTGCCGTTTGTTCTCAATCTGTACTGG TGGTTTGAAGGTTACAAGATCGCGGCGATTGTCTCGATGTTTGCTTTGCCTTTGGCAGTGAAGATCACAAAAAATGTTTT CGCCACGGAGCCAAGTCCGGCATACAATAAATTCCTGGGGCAGGCAGCGGGATTGCATCTGCTCTTTGGACTTCTTATTG CGATTGGATTTGCTTTTTGA
Upstream 100 bases:
>100_bases ACCCCCTTCATTCGGAAAACCTCCTTCTTTTGCCCTTAGAAATTCTTTTGGTCACGCGAAAAGAATCTGATACAAAGAGG TTGGATTTTAACCCTTAACA
Downstream 100 bases:
>100_bases TCAAGATCAGCTACAGCCCCTACACTCTGAAACCTGTCCAGTCCCTGAATGCCGCTACAGCGGCCACCGCGCGTGAAGGG GTCTTGCTGAAGGTTGAGTG
Product: 1,4-dihydroxy-2-naphthoate octaprenyltransferase
Products: NA
Alternate protein names: DHNA-octaprenyltransferase [H]
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MRCKMTSATQIKSILLAFRPKTLTAALVPCVAGTALVKAIGLSWDGWVLFYALMASFLIQIGTNLVNDAVDFKKGADTEK RIGPQRITQAGILTANQVMLLGSLCFALAVMCGIPLVLKGGWVIVAIGVASVLMGYSYTAGPFPLAYLGLGDLFVIIFFG LLAVTGIVFLNTGEWLSEAFVLGLQIGLHATVLIAINNLRDHAGDRLVNKKTLAVRFGVKFSRWEIAALAFLPFVLNLYW WFEGYKIAAIVSMFALPLAVKITKNVFATEPSPAYNKFLGQAAGLHLLFGLLIAIGFAF
Sequences:
>Translated_299_residues MRCKMTSATQIKSILLAFRPKTLTAALVPCVAGTALVKAIGLSWDGWVLFYALMASFLIQIGTNLVNDAVDFKKGADTEK RIGPQRITQAGILTANQVMLLGSLCFALAVMCGIPLVLKGGWVIVAIGVASVLMGYSYTAGPFPLAYLGLGDLFVIIFFG LLAVTGIVFLNTGEWLSEAFVLGLQIGLHATVLIAINNLRDHAGDRLVNKKTLAVRFGVKFSRWEIAALAFLPFVLNLYW WFEGYKIAAIVSMFALPLAVKITKNVFATEPSPAYNKFLGQAAGLHLLFGLLIAIGFAF >Mature_299_residues MRCKMTSATQIKSILLAFRPKTLTAALVPCVAGTALVKAIGLSWDGWVLFYALMASFLIQIGTNLVNDAVDFKKGADTEK RIGPQRITQAGILTANQVMLLGSLCFALAVMCGIPLVLKGGWVIVAIGVASVLMGYSYTAGPFPLAYLGLGDLFVIIFFG LLAVTGIVFLNTGEWLSEAFVLGLQIGLHATVLIAINNLRDHAGDRLVNKKTLAVRFGVKFSRWEIAALAFLPFVLNLYW WFEGYKIAAIVSMFALPLAVKITKNVFATEPSPAYNKFLGQAAGLHLLFGLLIAIGFAF
Specific function: Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to dimethylmenaquinone (DMK). Attaches octaprenylpyrophosphate, a membrane-bound 40-carbon side chain to DHNA. The conversion of DHNA to DMK proceeds in three stages:the removal of the carboxyl group of DHNA
COG id: COG1575
COG function: function code H; 1,4-dihydroxy-2-naphthoate octaprenyltransferase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the menA family [H]
Homologues:
Organism=Homo sapiens, GI7019551, Length=296, Percent_Identity=29.0540540540541, Blast_Score=85, Evalue=8e-17, Organism=Escherichia coli, GI1790365, Length=295, Percent_Identity=32.2033898305085, Blast_Score=117, Evalue=1e-27, Organism=Drosophila melanogaster, GI17737429, Length=316, Percent_Identity=29.1139240506329, Blast_Score=84, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004657 - InterPro: IPR000537 [H]
Pfam domain/function: PF01040 UbiA [H]
EC number: =2.5.1.74 [H]
Molecular weight: Translated: 32253; Mature: 32253
Theoretical pI: Translated: 10.00; Mature: 10.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRCKMTSATQIKSILLAFRPKTLTAALVPCVAGTALVKAIGLSWDGWVLFYALMASFLIQ CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH IGTNLVNDAVDFKKGADTEKRIGPQRITQAGILTANQVMLLGSLCFALAVMCGIPLVLKG HHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC GWVIVAIGVASVLMGYSYTAGPFPLAYLGLGDLFVIIFFGLLAVTGIVFLNTGEWLSEAF CEEEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHH VLGLQIGLHATVLIAINNLRDHAGDRLVNKKTLAVRFGVKFSRWEIAALAFLPFVLNLYW HHHHHHHHHEEEEEEEHHHHHHHCHHHCCCCEEEEEECCEECHHHHHHHHHHHHHHHHHH WFEGYKIAAIVSMFALPLAVKITKNVFATEPSPAYNKFLGQAAGLHLLFGLLIAIGFAF HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRCKMTSATQIKSILLAFRPKTLTAALVPCVAGTALVKAIGLSWDGWVLFYALMASFLIQ CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH IGTNLVNDAVDFKKGADTEKRIGPQRITQAGILTANQVMLLGSLCFALAVMCGIPLVLKG HHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC GWVIVAIGVASVLMGYSYTAGPFPLAYLGLGDLFVIIFFGLLAVTGIVFLNTGEWLSEAF CEEEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHH VLGLQIGLHATVLIAINNLRDHAGDRLVNKKTLAVRFGVKFSRWEIAALAFLPFVLNLYW HHHHHHHHHEEEEEEEHHHHHHHCHHHCCCCEEEEEECCEECHHHHHHHHHHHHHHHHHH WFEGYKIAAIVSMFALPLAVKITKNVFATEPSPAYNKFLGQAAGLHLLFGLLIAIGFAF HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]