| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is fabG [H]
Identifier: 42522112
GI number: 42522112
Start: 475475
End: 476308
Strand: Direct
Name: fabG [H]
Synonym: Bd0506
Alternate gene names: 42522112
Gene position: 475475-476308 (Clockwise)
Preceding gene: 42522111
Following gene: 42522114
Centisome position: 12.57
GC content: 54.32
Gene sequence:
>834_bases GTGGTTCTCGTATTAACTGATGTTAACTGGAGAACCATGATGAACTCTTCCGTATATTCCTCTTTGGACTTAAATGGCAA AACCGCCGTCGTGTGCGGGGCTTCCGGTGGCATTGGCGAAGCGGCAGCCAGTCTGATGGCCCGGCGTGGGGCCCGCATCA TTGCCGTGGCCCGCTCGGAAGAAAAACTGAAAAAACTTATGTCATCATTGCCGGGCTCTGATCACCGCTATCTGCTGGCG GATCTGGGTGATACTGAATCTTTGAAAGCCAACGTCCTTGCGCCACTGGCTTCCGAAACTGTGCACATTCTTCTGAACAA CACGGGCGGACCCAAAGGGGGGCCGCTGCACAAGGCTTCGATCGAAGAATTTGATCAACCCCTGCGGGCGCATCTGAAGG CGGCTCATCTGCTGGTGCAGGCGGTTTTGCCTTCGATGCAAAAGAATCACTATGGGCGGATCATCAACGTGATTTCGACG TCTGTAAAAACGCCGATTCCGAATCTGGGTGTTTCCAATACGGTGCGTGGGGCGATGGCGAACTGGTCAAAAACCCTGGC CGGGGAGCTGGCGGGTTATGGGATTACCGTGAACAACGTGCTGCCGGGATACATCCGCACCGACCGCTTCAAAAGTCTGG TGGAAACTTCAGCGCAAAATACAAATTCCAGTGTGGATGAAGTGGAAGAAGCCTGGAAGAAAACAATTCCCGCGGGCCGG GTTGGAGAACCTGAGGAGATGGCCGAGGCGATTGCTTTTTTGGCCAGTCCCGCCGCCGCTTACATCACCGGAATCAATCT TCCTGTGGATGGCGGCAGAACTCCGTCACTTTAA
Upstream 100 bases:
>100_bases CAGCGACATGAGAAAAGACGGAACGCTTCGCCGGATCGTTGCAAAATATGCCTCTGCGGAGGATTTGACTTTCTATAAAG ACCTTTAGGTTGCCCGCCAG
Downstream 100 bases:
>100_bases GGGTGGGGGTTAAAGCCCCACTCCCATGATCGCTTTCATTTCTTTCAAGGTCTGGCGGGTTTTTTCCTGAGCTTTCAGGG AGCCCTCTTTGCAGATTTTC
Product: putative short-chain dehydrogenase/reductase
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 277; Mature: 277
Protein sequence:
>277_residues MVLVLTDVNWRTMMNSSVYSSLDLNGKTAVVCGASGGIGEAAASLMARRGARIIAVARSEEKLKKLMSSLPGSDHRYLLA DLGDTESLKANVLAPLASETVHILLNNTGGPKGGPLHKASIEEFDQPLRAHLKAAHLLVQAVLPSMQKNHYGRIINVIST SVKTPIPNLGVSNTVRGAMANWSKTLAGELAGYGITVNNVLPGYIRTDRFKSLVETSAQNTNSSVDEVEEAWKKTIPAGR VGEPEEMAEAIAFLASPAAAYITGINLPVDGGRTPSL
Sequences:
>Translated_277_residues MVLVLTDVNWRTMMNSSVYSSLDLNGKTAVVCGASGGIGEAAASLMARRGARIIAVARSEEKLKKLMSSLPGSDHRYLLA DLGDTESLKANVLAPLASETVHILLNNTGGPKGGPLHKASIEEFDQPLRAHLKAAHLLVQAVLPSMQKNHYGRIINVIST SVKTPIPNLGVSNTVRGAMANWSKTLAGELAGYGITVNNVLPGYIRTDRFKSLVETSAQNTNSSVDEVEEAWKKTIPAGR VGEPEEMAEAIAFLASPAAAYITGINLPVDGGRTPSL >Mature_277_residues MVLVLTDVNWRTMMNSSVYSSLDLNGKTAVVCGASGGIGEAAASLMARRGARIIAVARSEEKLKKLMSSLPGSDHRYLLA DLGDTESLKANVLAPLASETVHILLNNTGGPKGGPLHKASIEEFDQPLRAHLKAAHLLVQAVLPSMQKNHYGRIINVIST SVKTPIPNLGVSNTVRGAMANWSKTLAGELAGYGITVNNVLPGYIRTDRFKSLVETSAQNTNSSVDEVEEAWKKTIPAGR VGEPEEMAEAIAFLASPAAAYITGINLPVDGGRTPSL
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=31.2741312741313, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI40254992, Length=249, Percent_Identity=34.5381526104418, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI32483357, Length=273, Percent_Identity=31.5018315018315, Blast_Score=104, Evalue=7e-23, Organism=Homo sapiens, GI5031737, Length=257, Percent_Identity=32.6848249027237, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI126723750, Length=262, Percent_Identity=30.1526717557252, Blast_Score=92, Evalue=8e-19, Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=29.9212598425197, Blast_Score=90, Evalue=3e-18, Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=29.2490118577075, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI226371731, Length=187, Percent_Identity=30.4812834224599, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI15277342, Length=265, Percent_Identity=28.6792452830189, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI33667109, Length=198, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI7705855, Length=189, Percent_Identity=26.984126984127, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI59889578, Length=236, Percent_Identity=29.6610169491525, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI1787335, Length=255, Percent_Identity=36.8627450980392, Blast_Score=134, Evalue=5e-33, Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=35.15625, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI1787905, Length=277, Percent_Identity=29.9638989169675, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1790717, Length=255, Percent_Identity=27.4509803921569, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=27.6679841897233, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI87082160, Length=263, Percent_Identity=29.277566539924, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1787820, Length=224, Percent_Identity=29.4642857142857, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1789208, Length=261, Percent_Identity=28.735632183908, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788459, Length=254, Percent_Identity=28.3464566929134, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786701, Length=186, Percent_Identity=30.6451612903226, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1789057, Length=177, Percent_Identity=28.8135593220339, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789378, Length=267, Percent_Identity=28.8389513108614, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI2367175, Length=259, Percent_Identity=29.7297297297297, Blast_Score=65, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=30.3030303030303, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=33.8645418326693, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=30.8270676691729, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=27.6679841897233, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17555706, Length=253, Percent_Identity=30.8300395256917, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=30.7086614173228, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=30.7086614173228, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17559104, Length=259, Percent_Identity=29.3436293436293, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=29.9242424242424, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560150, Length=268, Percent_Identity=29.1044776119403, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=28.8973384030418, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17551412, Length=274, Percent_Identity=29.5620437956204, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17562990, Length=268, Percent_Identity=29.4776119402985, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI115534694, Length=258, Percent_Identity=27.5193798449612, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17538486, Length=258, Percent_Identity=27.1317829457364, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=28.6259541984733, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=27.7566539923954, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=27.2727272727273, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI72000259, Length=267, Percent_Identity=29.5880149812734, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=28.0898876404494, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=27.7566539923954, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=27.9850746268657, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17562904, Length=270, Percent_Identity=27.7777777777778, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17561402, Length=262, Percent_Identity=25.9541984732824, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=27.6515151515151, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17508651, Length=258, Percent_Identity=25.968992248062, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71997402, Length=193, Percent_Identity=30.0518134715026, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17536025, Length=279, Percent_Identity=24.7311827956989, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=202, Percent_Identity=28.2178217821782, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI23397609, Length=263, Percent_Identity=34.2205323193916, Blast_Score=127, Evalue=7e-30, Organism=Drosophila melanogaster, GI24639444, Length=255, Percent_Identity=32.156862745098, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=34.2629482071713, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=33.8645418326693, Blast_Score=115, Evalue=5e-26, Organism=Drosophila melanogaster, GI24644339, Length=258, Percent_Identity=31.0077519379845, Blast_Score=107, Evalue=1e-23, Organism=Drosophila melanogaster, GI24644337, Length=268, Percent_Identity=33.955223880597, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI21355319, Length=266, Percent_Identity=30.8270676691729, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24640442, Length=199, Percent_Identity=30.6532663316583, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI161076933, Length=212, Percent_Identity=29.7169811320755, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24584748, Length=212, Percent_Identity=29.7169811320755, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI21358495, Length=235, Percent_Identity=29.3617021276596, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24643142, Length=255, Percent_Identity=27.843137254902, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24584744, Length=191, Percent_Identity=28.7958115183246, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI28574402, Length=191, Percent_Identity=28.7958115183246, Blast_Score=77, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 29323; Mature: 29323
Theoretical pI: Translated: 8.95; Mature: 8.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLVLTDVNWRTMMNSSVYSSLDLNGKTAVVCGASGGIGEAAASLMARRGARIIAVARSE CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCH EKLKKLMSSLPGSDHRYLLADLGDTESLKANVLAPLASETVHILLNNTGGPKGGPLHKAS HHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHH IEEFDQPLRAHLKAAHLLVQAVLPSMQKNHYGRIINVISTSVKTPIPNLGVSNTVRGAMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH NWSKTLAGELAGYGITVNNVLPGYIRTDRFKSLVETSAQNTNSSVDEVEEAWKKTIPAGR HHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC VGEPEEMAEAIAFLASPAAAYITGINLPVDGGRTPSL CCCHHHHHHHHHHHHCCHHHHHEECCCCCCCCCCCCC >Mature Secondary Structure MVLVLTDVNWRTMMNSSVYSSLDLNGKTAVVCGASGGIGEAAASLMARRGARIIAVARSE CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCH EKLKKLMSSLPGSDHRYLLADLGDTESLKANVLAPLASETVHILLNNTGGPKGGPLHKAS HHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHH IEEFDQPLRAHLKAAHLLVQAVLPSMQKNHYGRIINVISTSVKTPIPNLGVSNTVRGAMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH NWSKTLAGELAGYGITVNNVLPGYIRTDRFKSLVETSAQNTNSSVDEVEEAWKKTIPAGR HHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC VGEPEEMAEAIAFLASPAAAYITGINLPVDGGRTPSL CCCHHHHHHHHHHHHCCHHHHHEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]