| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is 42522070
Identifier: 42522070
GI number: 42522070
Start: 434103
End: 435251
Strand: Direct
Name: 42522070
Synonym: Bd0462
Alternate gene names: NA
Gene position: 434103-435251 (Clockwise)
Preceding gene: 42522065
Following gene: 42522075
Centisome position: 11.48
GC content: 51.17
Gene sequence:
>1149_bases ATGGCAAATAATCTTCCGCGTTGGGCGTGTGTCGCTCTGTCTATTTTTTCGATTTCATTGCCAGCTCTGGCTGTGGATAA CTACAAGGAATTTCGCCGGGATCACTGGGATTTTGAGGTGAATGCCAACTATTTCTATTCTGAGGCCAATTATCCGGCTT CAGGGGGCGGCAGTCAGAGCCTGGTCAGTGGTAACAGCTACTCGTTAATCGACACTTCTTTTGGGACTCGCTATGTTCCG AAAAGAAACTGGTCGATTCTGGGCTGGGGAACGATCAGCAATGCGGAAAGCAAGGACTCGGTCGCCACTCGTTCCAACAG TTCGATCAGTGAAGCGGCTGTGGGCTTTGATTTCCTGATGTATTCCGACGCATTTCAGCTGATTCCGGAAGTCATCGCGG TCATGCCCTTTGAAGAGGTCAACCCTGCTTCGGATACCGTACTGAATTCAGAAGGTGTTTTTGAGGTTCGCTCCCGTTTG ATTGCACAAAAAGACTTCGGAACTCTGCGCGGCTATGGCTGGCTGGGTTTCAATTATCGCGGCAGTGGCCGCTCATTCCT GATGCCTTGGGGGGTGGGGGCGCAGATGAAGCTGCAGCGACTGCGTTTGGGAGCCGAGCTTTTCGGTTATCAAAGTGTTT CTGATGACACCACGGACGTGACTGAAGCTTTGCGAACTTCTTACATCAACAGCGTCAATGCGGGTTCAATGAAATTCTAT TCTGTGAAACCGAATTTGATGGACAGTCAGCTGTATGCAACCTGGCTGATCAGTCCGAAGTTGAGTGTGCAGGCCAATGG GGGCATGACGCTGACGGGCTCTAATTCGGCGGCGGGCTTCCATGTCGGTGGTTTCATCCGCTACAGCTTTGATATGAGCG AGGGTTATTCAGAGCCGGACTATGTTCCTCCGGTTGAAAACCCGGTGCCGAACTACCGCTCCAATATGTATGAAGAAAGC GATTTGAGCTCCGAAAAGAAAGTCCGCCGCTTTAAAGAGCAGACAAGCGACGGTGTGGATCAGAACCTGTTCAAGCCCCG TCCGACTGCGCCGAAAAAGCGTCCGCGGGTGGATGATGAATTGCAACAGCAGCTGGATGATACGGAATTCCAGATCGAGC TGAAATCCAACAAAAAGAAACGTCGTTAG
Upstream 100 bases:
>100_bases AAGCCCACTAAATACAGGAAAACAGTGAAAAAGATGATGGCCAGCTGTGATTTGTTTGATGTCGCAGTCATAGGGTTGTT AATATTAGGAAGTTATGAAA
Downstream 100 bases:
>100_bases TTTTAGGGAAGCCTCAGTGCTTCCCTTGTTTTTTCCACATCAAGACCTGCCAGCTCCACCACCTTGTGGCGTCCGGTTTC GCCTTTGATCAAATGCACAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 382; Mature: 381
Protein sequence:
>382_residues MANNLPRWACVALSIFSISLPALAVDNYKEFRRDHWDFEVNANYFYSEANYPASGGGSQSLVSGNSYSLIDTSFGTRYVP KRNWSILGWGTISNAESKDSVATRSNSSISEAAVGFDFLMYSDAFQLIPEVIAVMPFEEVNPASDTVLNSEGVFEVRSRL IAQKDFGTLRGYGWLGFNYRGSGRSFLMPWGVGAQMKLQRLRLGAELFGYQSVSDDTTDVTEALRTSYINSVNAGSMKFY SVKPNLMDSQLYATWLISPKLSVQANGGMTLTGSNSAAGFHVGGFIRYSFDMSEGYSEPDYVPPVENPVPNYRSNMYEES DLSSEKKVRRFKEQTSDGVDQNLFKPRPTAPKKRPRVDDELQQQLDDTEFQIELKSNKKKRR
Sequences:
>Translated_382_residues MANNLPRWACVALSIFSISLPALAVDNYKEFRRDHWDFEVNANYFYSEANYPASGGGSQSLVSGNSYSLIDTSFGTRYVP KRNWSILGWGTISNAESKDSVATRSNSSISEAAVGFDFLMYSDAFQLIPEVIAVMPFEEVNPASDTVLNSEGVFEVRSRL IAQKDFGTLRGYGWLGFNYRGSGRSFLMPWGVGAQMKLQRLRLGAELFGYQSVSDDTTDVTEALRTSYINSVNAGSMKFY SVKPNLMDSQLYATWLISPKLSVQANGGMTLTGSNSAAGFHVGGFIRYSFDMSEGYSEPDYVPPVENPVPNYRSNMYEES DLSSEKKVRRFKEQTSDGVDQNLFKPRPTAPKKRPRVDDELQQQLDDTEFQIELKSNKKKRR >Mature_381_residues ANNLPRWACVALSIFSISLPALAVDNYKEFRRDHWDFEVNANYFYSEANYPASGGGSQSLVSGNSYSLIDTSFGTRYVPK RNWSILGWGTISNAESKDSVATRSNSSISEAAVGFDFLMYSDAFQLIPEVIAVMPFEEVNPASDTVLNSEGVFEVRSRLI AQKDFGTLRGYGWLGFNYRGSGRSFLMPWGVGAQMKLQRLRLGAELFGYQSVSDDTTDVTEALRTSYINSVNAGSMKFYS VKPNLMDSQLYATWLISPKLSVQANGGMTLTGSNSAAGFHVGGFIRYSFDMSEGYSEPDYVPPVENPVPNYRSNMYEESD LSSEKKVRRFKEQTSDGVDQNLFKPRPTAPKKRPRVDDELQQQLDDTEFQIELKSNKKKRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42815; Mature: 42684
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANNLPRWACVALSIFSISLPALAVDNYKEFRRDHWDFEVNANYFYSEANYPASGGGSQS CCCCCCHHHHHHHHHHHHCCCHHHHHCHHHHHHCCCCEEECCCEEEECCCCCCCCCCCCC LVSGNSYSLIDTSFGTRYVPKRNWSILGWGTISNAESKDSVATRSNSSISEAAVGFDFLM EECCCCEEEEECCCCCEECCCCCCEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHH YSDAFQLIPEVIAVMPFEEVNPASDTVLNSEGVFEVRSRLIAQKDFGTLRGYGWLGFNYR HHHHHHHHHHHHHHCCHHHCCCCHHCEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEE GSGRSFLMPWGVGAQMKLQRLRLGAELFGYQSVSDDTTDVTEALRTSYINSVNAGSMKFY CCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE SVKPNLMDSQLYATWLISPKLSVQANGGMTLTGSNSAAGFHVGGFIRYSFDMSEGYSEPD EECCCCCCCCEEEEEEECCCEEEEECCCEEEECCCCCCCEEECEEEEEEEEHHCCCCCCC YVPPVENPVPNYRSNMYEESDLSSEKKVRRFKEQTSDGVDQNLFKPRPTAPKKRPRVDDE CCCCCCCCCCCHHHHCCCHHCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCHH LQQQLDDTEFQIELKSNKKKRR HHHHCCCCEEEEEECCCCCCCC >Mature Secondary Structure ANNLPRWACVALSIFSISLPALAVDNYKEFRRDHWDFEVNANYFYSEANYPASGGGSQS CCCCCHHHHHHHHHHHHCCCHHHHHCHHHHHHCCCCEEECCCEEEECCCCCCCCCCCCC LVSGNSYSLIDTSFGTRYVPKRNWSILGWGTISNAESKDSVATRSNSSISEAAVGFDFLM EECCCCEEEEECCCCCEECCCCCCEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHH YSDAFQLIPEVIAVMPFEEVNPASDTVLNSEGVFEVRSRLIAQKDFGTLRGYGWLGFNYR HHHHHHHHHHHHHHCCHHHCCCCHHCEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEE GSGRSFLMPWGVGAQMKLQRLRLGAELFGYQSVSDDTTDVTEALRTSYINSVNAGSMKFY CCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE SVKPNLMDSQLYATWLISPKLSVQANGGMTLTGSNSAAGFHVGGFIRYSFDMSEGYSEPD EECCCCCCCCEEEEEEECCCEEEEECCCEEEECCCCCCCEEECEEEEEEEEHHCCCCCCC YVPPVENPVPNYRSNMYEESDLSSEKKVRRFKEQTSDGVDQNLFKPRPTAPKKRPRVDDE CCCCCCCCCCCHHHHCCCHHCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCHH LQQQLDDTEFQIELKSNKKKRR HHHHCCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA