| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522017
Identifier: 42522017
GI number: 42522017
Start: 380108
End: 380656
Strand: Direct
Name: 42522017
Synonym: Bd0403
Alternate gene names: NA
Gene position: 380108-380656 (Clockwise)
Preceding gene: 42522014
Following gene: 42522018
Centisome position: 10.05
GC content: 48.63
Gene sequence:
>549_bases ATGAGACTTCTGGTTTCTTGCCTTCTAATAATGATGAGTTTTTCAGGTGCCTGCTGGGCCAAGGTGGACTTGCGTACCAC GAAGCCCCTGGTGATTCCTGAGGATAAAGTCACACCTAAGATCACCAAAGAAGACGTCGCGAAAATCATTCCTTTGGACA TTCAAAGCAACGAAAGCACGGGTTCTGTGATGAGCCGTATTGCTGATCGTGGCTTCAATATGTGGTTCAACTCTCCGATC ATTAAAAACAGCCTTCTGGGTCGTGCTGTGGAAGAAACCCAGGAAAAACTGAAAACGGACGTGGTGGTGCCGGCGGCAAC TCCGCGCGGAGTCAGTCATAAGTTCTCTTTCCGTGTTGAAGCCTTCCAGGCTTTGGCGAAGGTGGAATATTCCGGCTGGG TGAAGGCTGCGGTCAATTATGATGCAAAAGCTTCGGCAACCGATATTCAGTTCAAAGACAAAGTCATGAACAACAAAGAT CTGGTTGTCAGTCACAAAGCCAACAAAGAACAGGGCCTGTCGATGATTGGCCTTGCCTGGTCCTGGTAA
Upstream 100 bases:
>100_bases GTCTTACATCCCGCTGTACCGCTGTTATTTGCTCATTATCTCCGCTTTAAAGGGACTGGAGCCACTTTGGGTGGAATGCT CTTTGAATATGGAGGTATGT
Downstream 100 bases:
>100_bases GCGTCCTACCCTTAGGACATGGAAAAAATCGTATTTATCTCTGGAAAAAGAACTCCCTTCGGAGCCTTCGGCGGTTCATT GAAGGATGTATCAGCAACGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 182; Mature: 182
Protein sequence:
>182_residues MRLLVSCLLIMMSFSGACWAKVDLRTTKPLVIPEDKVTPKITKEDVAKIIPLDIQSNESTGSVMSRIADRGFNMWFNSPI IKNSLLGRAVEETQEKLKTDVVVPAATPRGVSHKFSFRVEAFQALAKVEYSGWVKAAVNYDAKASATDIQFKDKVMNNKD LVVSHKANKEQGLSMIGLAWSW
Sequences:
>Translated_182_residues MRLLVSCLLIMMSFSGACWAKVDLRTTKPLVIPEDKVTPKITKEDVAKIIPLDIQSNESTGSVMSRIADRGFNMWFNSPI IKNSLLGRAVEETQEKLKTDVVVPAATPRGVSHKFSFRVEAFQALAKVEYSGWVKAAVNYDAKASATDIQFKDKVMNNKD LVVSHKANKEQGLSMIGLAWSW >Mature_182_residues MRLLVSCLLIMMSFSGACWAKVDLRTTKPLVIPEDKVTPKITKEDVAKIIPLDIQSNESTGSVMSRIADRGFNMWFNSPI IKNSLLGRAVEETQEKLKTDVVVPAATPRGVSHKFSFRVEAFQALAKVEYSGWVKAAVNYDAKASATDIQFKDKVMNNKD LVVSHKANKEQGLSMIGLAWSW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20233; Mature: 20233
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLVSCLLIMMSFSGACWAKVDLRTTKPLVIPEDKVTPKITKEDVAKIIPLDIQSNEST CHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCCCCCCCCCHHHHHHEECCCCCCCCCH GSVMSRIADRGFNMWFNSPIIKNSLLGRAVEETQEKLKTDVVVPAATPRGVSHKFSFRVE HHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCHHHHHH AFQALAKVEYSGWVKAAVNYDAKASATDIQFKDKVMNNKDLVVSHKANKEQGLSMIGLAW HHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHCCCCCEEEEECCCHHHCCEEEEEEE SW CC >Mature Secondary Structure MRLLVSCLLIMMSFSGACWAKVDLRTTKPLVIPEDKVTPKITKEDVAKIIPLDIQSNEST CHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCCCCCCCCCHHHHHHEECCCCCCCCCH GSVMSRIADRGFNMWFNSPIIKNSLLGRAVEETQEKLKTDVVVPAATPRGVSHKFSFRVE HHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCHHHHHH AFQALAKVEYSGWVKAAVNYDAKASATDIQFKDKVMNNKDLVVSHKANKEQGLSMIGLAW HHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHCCCCCEEEEECCCHHHCCEEEEEEE SW CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA