| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is aspA [H]
Identifier: 42521990
GI number: 42521990
Start: 350642
End: 352339
Strand: Direct
Name: aspA [H]
Synonym: Bd0376
Alternate gene names: 42521990
Gene position: 350642-352339 (Clockwise)
Preceding gene: 42521989
Following gene: 42521995
Centisome position: 9.27
GC content: 53.71
Gene sequence:
>1698_bases ATGCTGGCGGGCCTTGCAGTGATAGCCACTATCACGGGGACTTTATTTACCAACTGTGCGAAGAACAGTTTCACCGCCGT TGGTGAAGAGCTGGTGGGCACCGGGGCGGATCCGCTGTTGGGTTATGCCTGGCATATCAATAACACCGGACAAAAGGTTT TCGCCACCGATGCCGGAACCGCGGGTGTTGATCTGAATCTGTTGCAGTCGTGGACCGGGGGACTGACCGGAAGTGGAATC AAGATTGTGATTTCCGATGACGGGGTTCAGGATGCCCATCCGGATTTGAAGGACAACTTCCTTTATGGGGTGTCCAAGAA CTATCATACTTCAGGTACGAACAATGCTCCTCCGAACTCTGCGGATGACAATCACGGGACTGCGGTTGCGGGTCTGGCGG CGGCTGTCGGGGATAACGGTGTGGGCAGCAAGGGTGTTGCTTACAAAGCCAAACTGCTGGCCTATAACTTCCTGTCTACA GGAGTTTCGCAAACCTTCAGCCGAATGGCCGAGCAGCTGAGCGGTGGGTATGATGTTTACAACATGAGCTGGGGGAACTC GCAGAACTATCTGCCGGATCCTGTGGCCGCCTGGGAAACAGCTTTGCTGAACGGGGTGCTCAATGGTCGCAGTGGCAAAG GCTCCATTTATGTAAAGTCTGCCGGTAATGACTTCCTGGTGGAATGCAAAGGCTCCACCGACACCTACTGCATCGGCAAC TCCAATTTGGACCCGGACAACAGCACGCCTTACACAATTCTGGTGACGGCATTAAATTCCACCGGTGACGCGGCTTCGTA TTCGTCTGTGGGTTCGAATGTCTGGATTTCGTCCTTTGGGGGAGAGTCCGGCGATGATTCTCCGGCGATGGTGACCACCG ATCGCACCGGTTGTACGGCGGGCTATGCTCAGACCAGCATTTCCGGCAAAGTGGAGTTCGAACGAGGCAACAACGGAAAC AGCAATTGCAATTACACGACGACATTTAACGGGACTTCTTCGGCGGCTCCGGTTCTGACCGGGGCGATTGCGCTTCTGCT GGAAGCCAATCCGAATCTCAACTGGCGTGATGTGAAATACATTCTGGCGAAGACGGCGGTGCAGGTTCGTCCTAACTCGG GGGCCATCAGTAACCATCCACTTAGAAATTATCCAGGGAATTCGTCCAAGAACGTGATTCTGCCGACAGGGGCGGTCTGG GAAAATGCCTGGGTGACCAACAGTGCCGGATTCAAATTCCACAACTGGTATGGCTTTGGTCGTGTGGATGTGGATGCGGC GGTGGCGATGGCAAAAAACTACACTTCGACGTTTACGGCCGGTCTTTCTGGTACAAGTTGGATTGAGAACACAACAAGGG TGGCCATTCCTGATTACAGTGCGACGGGTGTCAGCAACACCGTGACAGTGACAGACAATCTGCGCATCGAAGGGGTTCGT ATCCGGTTGAAAGTGGATCATGACCGCGTGGGGGATCTGGGTGTGGAACTGACGTCTCCGTCAGGCACCAAGAGCATGAT TTTGAATATGCGAAATTCGTTGTTGGGTCAGGTGGACTATGACAACGAAGTCTTCCTGAGCAATGCTTTCTTCCAGGAGC GCTCCAATGGCACCTGGACAATCAAAGTCATTGATGGTGGTTCAACCTTCAATGGGGATCTGGTCAGCTGGGGGCTGCAG ATCATCGGAACACCTTAG
Upstream 100 bases:
>100_bases TCCTCTTTGAAAGAACGTTTAAGCAGCGAACCTGGCGTCAGTCAGACCCAGCTGGAGATTTTGAGCAGGAAGTATGAAAA GTTTTAGTCCCAAAGCCAAA
Downstream 100 bases:
>100_bases TCCGCAATAAACATCGATGATATACAGCGGGTTTCAAGGTTTCCGCTGTAATAGGACGTTGAACCCACACGGGAGAATGT CTTTGTGGTGCTGTCATAGC
Product: putative extracellular serine protease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 565; Mature: 565
Protein sequence:
>565_residues MLAGLAVIATITGTLFTNCAKNSFTAVGEELVGTGADPLLGYAWHINNTGQKVFATDAGTAGVDLNLLQSWTGGLTGSGI KIVISDDGVQDAHPDLKDNFLYGVSKNYHTSGTNNAPPNSADDNHGTAVAGLAAAVGDNGVGSKGVAYKAKLLAYNFLST GVSQTFSRMAEQLSGGYDVYNMSWGNSQNYLPDPVAAWETALLNGVLNGRSGKGSIYVKSAGNDFLVECKGSTDTYCIGN SNLDPDNSTPYTILVTALNSTGDAASYSSVGSNVWISSFGGESGDDSPAMVTTDRTGCTAGYAQTSISGKVEFERGNNGN SNCNYTTTFNGTSSAAPVLTGAIALLLEANPNLNWRDVKYILAKTAVQVRPNSGAISNHPLRNYPGNSSKNVILPTGAVW ENAWVTNSAGFKFHNWYGFGRVDVDAAVAMAKNYTSTFTAGLSGTSWIENTTRVAIPDYSATGVSNTVTVTDNLRIEGVR IRLKVDHDRVGDLGVELTSPSGTKSMILNMRNSLLGQVDYDNEVFLSNAFFQERSNGTWTIKVIDGGSTFNGDLVSWGLQ IIGTP
Sequences:
>Translated_565_residues MLAGLAVIATITGTLFTNCAKNSFTAVGEELVGTGADPLLGYAWHINNTGQKVFATDAGTAGVDLNLLQSWTGGLTGSGI KIVISDDGVQDAHPDLKDNFLYGVSKNYHTSGTNNAPPNSADDNHGTAVAGLAAAVGDNGVGSKGVAYKAKLLAYNFLST GVSQTFSRMAEQLSGGYDVYNMSWGNSQNYLPDPVAAWETALLNGVLNGRSGKGSIYVKSAGNDFLVECKGSTDTYCIGN SNLDPDNSTPYTILVTALNSTGDAASYSSVGSNVWISSFGGESGDDSPAMVTTDRTGCTAGYAQTSISGKVEFERGNNGN SNCNYTTTFNGTSSAAPVLTGAIALLLEANPNLNWRDVKYILAKTAVQVRPNSGAISNHPLRNYPGNSSKNVILPTGAVW ENAWVTNSAGFKFHNWYGFGRVDVDAAVAMAKNYTSTFTAGLSGTSWIENTTRVAIPDYSATGVSNTVTVTDNLRIEGVR IRLKVDHDRVGDLGVELTSPSGTKSMILNMRNSLLGQVDYDNEVFLSNAFFQERSNGTWTIKVIDGGSTFNGDLVSWGLQ IIGTP >Mature_565_residues MLAGLAVIATITGTLFTNCAKNSFTAVGEELVGTGADPLLGYAWHINNTGQKVFATDAGTAGVDLNLLQSWTGGLTGSGI KIVISDDGVQDAHPDLKDNFLYGVSKNYHTSGTNNAPPNSADDNHGTAVAGLAAAVGDNGVGSKGVAYKAKLLAYNFLST GVSQTFSRMAEQLSGGYDVYNMSWGNSQNYLPDPVAAWETALLNGVLNGRSGKGSIYVKSAGNDFLVECKGSTDTYCIGN SNLDPDNSTPYTILVTALNSTGDAASYSSVGSNVWISSFGGESGDDSPAMVTTDRTGCTAGYAQTSISGKVEFERGNNGN SNCNYTTTFNGTSSAAPVLTGAIALLLEANPNLNWRDVKYILAKTAVQVRPNSGAISNHPLRNYPGNSSKNVILPTGAVW ENAWVTNSAGFKFHNWYGFGRVDVDAAVAMAKNYTSTFTAGLSGTSWIENTTRVAIPDYSATGVSNTVTVTDNLRIEGVR IRLKVDHDRVGDLGVELTSPSGTKSMILNMRNSLLGQVDYDNEVFLSNAFFQERSNGTWTIKVIDGGSTFNGDLVSWGLQ IIGTP
Specific function: Agent of furonculosis [H]
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S8 family [H]
Homologues:
Organism=Homo sapiens, GI299523015, Length=529, Percent_Identity=29.4896030245747, Blast_Score=183, Evalue=4e-46, Organism=Homo sapiens, GI20336246, Length=523, Percent_Identity=29.0630975143403, Blast_Score=174, Evalue=1e-43, Organism=Homo sapiens, GI4505579, Length=540, Percent_Identity=26.8518518518519, Blast_Score=172, Evalue=6e-43, Organism=Homo sapiens, GI76443679, Length=536, Percent_Identity=26.6791044776119, Blast_Score=171, Evalue=2e-42, Organism=Homo sapiens, GI20336244, Length=550, Percent_Identity=29.0909090909091, Blast_Score=170, Evalue=3e-42, Organism=Homo sapiens, GI20336180, Length=544, Percent_Identity=27.2058823529412, Blast_Score=166, Evalue=5e-41, Organism=Homo sapiens, GI4505577, Length=544, Percent_Identity=27.2058823529412, Blast_Score=166, Evalue=6e-41, Organism=Homo sapiens, GI20336182, Length=517, Percent_Identity=27.6595744680851, Blast_Score=165, Evalue=1e-40, Organism=Homo sapiens, GI20336184, Length=517, Percent_Identity=27.4661508704062, Blast_Score=165, Evalue=1e-40, Organism=Homo sapiens, GI27894285, Length=520, Percent_Identity=26.9230769230769, Blast_Score=159, Evalue=5e-39, Organism=Homo sapiens, GI20336190, Length=520, Percent_Identity=26.9230769230769, Blast_Score=159, Evalue=5e-39, Organism=Homo sapiens, GI20336188, Length=520, Percent_Identity=26.9230769230769, Blast_Score=159, Evalue=7e-39, Organism=Homo sapiens, GI295424143, Length=552, Percent_Identity=25.9057971014493, Blast_Score=151, Evalue=1e-36, Organism=Homo sapiens, GI20336242, Length=552, Percent_Identity=25.9057971014493, Blast_Score=151, Evalue=1e-36, Organism=Homo sapiens, GI20336248, Length=550, Percent_Identity=27.0909090909091, Blast_Score=123, Evalue=5e-28, Organism=Homo sapiens, GI20336186, Length=310, Percent_Identity=28.3870967741935, Blast_Score=104, Evalue=2e-22, Organism=Homo sapiens, GI295424145, Length=252, Percent_Identity=28.1746031746032, Blast_Score=89, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71987206, Length=560, Percent_Identity=29.2857142857143, Blast_Score=165, Evalue=8e-41, Organism=Caenorhabditis elegans, GI71988312, Length=550, Percent_Identity=27.6363636363636, Blast_Score=162, Evalue=4e-40, Organism=Caenorhabditis elegans, GI71988321, Length=551, Percent_Identity=27.7676950998185, Blast_Score=162, Evalue=4e-40, Organism=Caenorhabditis elegans, GI71988315, Length=551, Percent_Identity=27.7676950998185, Blast_Score=162, Evalue=4e-40, Organism=Caenorhabditis elegans, GI71988297, Length=551, Percent_Identity=27.7676950998185, Blast_Score=162, Evalue=5e-40, Organism=Caenorhabditis elegans, GI71988308, Length=551, Percent_Identity=27.7676950998185, Blast_Score=162, Evalue=6e-40, Organism=Caenorhabditis elegans, GI71988301, Length=551, Percent_Identity=27.7676950998185, Blast_Score=162, Evalue=6e-40, Organism=Caenorhabditis elegans, GI25141268, Length=543, Percent_Identity=26.1510128913444, Blast_Score=152, Evalue=3e-37, Organism=Caenorhabditis elegans, GI71983555, Length=403, Percent_Identity=26.302729528536, Blast_Score=124, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17505240, Length=485, Percent_Identity=27.2164948453608, Blast_Score=115, Evalue=7e-26, Organism=Caenorhabditis elegans, GI71987215, Length=473, Percent_Identity=27.2727272727273, Blast_Score=110, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6324091, Length=541, Percent_Identity=28.6506469500924, Blast_Score=169, Evalue=9e-43, Organism=Drosophila melanogaster, GI281360987, Length=543, Percent_Identity=28.9134438305709, Blast_Score=177, Evalue=2e-44, Organism=Drosophila melanogaster, GI24642494, Length=543, Percent_Identity=28.9134438305709, Blast_Score=177, Evalue=2e-44, Organism=Drosophila melanogaster, GI24642490, Length=543, Percent_Identity=28.9134438305709, Blast_Score=177, Evalue=2e-44, Organism=Drosophila melanogaster, GI45555723, Length=543, Percent_Identity=28.9134438305709, Blast_Score=177, Evalue=2e-44, Organism=Drosophila melanogaster, GI24642492, Length=543, Percent_Identity=28.9134438305709, Blast_Score=177, Evalue=2e-44, Organism=Drosophila melanogaster, GI24642488, Length=543, Percent_Identity=28.9134438305709, Blast_Score=176, Evalue=5e-44, Organism=Drosophila melanogaster, GI24642484, Length=543, Percent_Identity=28.9134438305709, Blast_Score=176, Evalue=5e-44, Organism=Drosophila melanogaster, GI24642486, Length=543, Percent_Identity=28.9134438305709, Blast_Score=176, Evalue=5e-44, Organism=Drosophila melanogaster, GI17136192, Length=546, Percent_Identity=29.3040293040293, Blast_Score=172, Evalue=4e-43, Organism=Drosophila melanogaster, GI24650056, Length=512, Percent_Identity=24.0234375, Blast_Score=120, Evalue=2e-27, Organism=Drosophila melanogaster, GI24650058, Length=512, Percent_Identity=24.0234375, Blast_Score=120, Evalue=3e-27, Organism=Drosophila melanogaster, GI24650060, Length=512, Percent_Identity=24.0234375, Blast_Score=120, Evalue=3e-27, Organism=Drosophila melanogaster, GI45553513, Length=512, Percent_Identity=24.0234375, Blast_Score=120, Evalue=3e-27, Organism=Drosophila melanogaster, GI45553515, Length=512, Percent_Identity=24.0234375, Blast_Score=120, Evalue=3e-27, Organism=Drosophila melanogaster, GI17864552, Length=513, Percent_Identity=24.3664717348928, Blast_Score=119, Evalue=7e-27, Organism=Drosophila melanogaster, GI281360985, Length=192, Percent_Identity=33.8541666666667, Blast_Score=98, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008979 - InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR015500 - InterPro: IPR002884 [H]
Pfam domain/function: PF01483 P_proprotein; PF00082 Peptidase_S8 [H]
EC number: NA
Molecular weight: Translated: 59452; Mature: 59452
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: PS00137 SUBTILASE_HIS ; PS00138 SUBTILASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAGLAVIATITGTLFTNCAKNSFTAVGEELVGTGADPLLGYAWHINNTGQKVFATDAGT CCCHHEEHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEECCCC AGVDLNLLQSWTGGLTGSGIKIVISDDGVQDAHPDLKDNFLYGVSKNYHTSGTNNAPPNS CCCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC ADDNHGTAVAGLAAAVGDNGVGSKGVAYKAKLLAYNFLSTGVSQTFSRMAEQLSGGYDVY CCCCCCCCHHHHHHHHCCCCCCCCCCEEEEHHEEHHHHHHHHHHHHHHHHHHHCCCEEEE NMSWGNSQNYLPDPVAAWETALLNGVLNGRSGKGSIYVKSAGNDFLVECKGSTDTYCIGN EECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEECC SNLDPDNSTPYTILVTALNSTGDAASYSSVGSNVWISSFGGESGDDSPAMVTTDRTGCTA CCCCCCCCCCEEEEEEEECCCCCCCCHHHCCCCEEEEECCCCCCCCCCEEEEECCCCCCC GYAQTSISGKVEFERGNNGNSNCNYTTTFNGTSSAAPVLTGAIALLLEANPNLNWRDVKY CCEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCCHHHHEEEEEEEECCCCCCHHHHHH ILAKTAVQVRPNSGAISNHPLRNYPGNSSKNVILPTGAVWENAWVTNSAGFKFHNWYGFG EEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCEEEEEEEECC RVDVDAAVAMAKNYTSTFTAGLSGTSWIENTTRVAIPDYSATGVSNTVTVTDNLRIEGVR EEEHHHHHHHHHCCCCEEECCCCCCCHHCCCEEEEECCCCCCCCCCEEEEECCEEEEEEE IRLKVDHDRVGDLGVELTSPSGTKSMILNMRNSLLGQVDYDNEVFLSNAFFQERSNGTWT EEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHCEECCCCCEEEEEEHHHHHCCCCEEE IKVIDGGSTFNGDLVSWGLQIIGTP EEEEECCCCCCCCCEEECEEEEECC >Mature Secondary Structure MLAGLAVIATITGTLFTNCAKNSFTAVGEELVGTGADPLLGYAWHINNTGQKVFATDAGT CCCHHEEHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEECCCC AGVDLNLLQSWTGGLTGSGIKIVISDDGVQDAHPDLKDNFLYGVSKNYHTSGTNNAPPNS CCCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC ADDNHGTAVAGLAAAVGDNGVGSKGVAYKAKLLAYNFLSTGVSQTFSRMAEQLSGGYDVY CCCCCCCCHHHHHHHHCCCCCCCCCCEEEEHHEEHHHHHHHHHHHHHHHHHHHCCCEEEE NMSWGNSQNYLPDPVAAWETALLNGVLNGRSGKGSIYVKSAGNDFLVECKGSTDTYCIGN EECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEECC SNLDPDNSTPYTILVTALNSTGDAASYSSVGSNVWISSFGGESGDDSPAMVTTDRTGCTA CCCCCCCCCCEEEEEEEECCCCCCCCHHHCCCCEEEEECCCCCCCCCCEEEEECCCCCCC GYAQTSISGKVEFERGNNGNSNCNYTTTFNGTSSAAPVLTGAIALLLEANPNLNWRDVKY CCEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCCHHHHEEEEEEEECCCCCCHHHHHH ILAKTAVQVRPNSGAISNHPLRNYPGNSSKNVILPTGAVWENAWVTNSAGFKFHNWYGFG EEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCEEEEEEEECC RVDVDAAVAMAKNYTSTFTAGLSGTSWIENTTRVAIPDYSATGVSNTVTVTDNLRIEGVR EEEHHHHHHHHHCCCCEEECCCCCCCHHCCCEEEEECCCCCCCCCCEEEEECCEEEEEEE IRLKVDHDRVGDLGVELTSPSGTKSMILNMRNSLLGQVDYDNEVFLSNAFFQERSNGTWT EEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHCEECCCCCEEEEEEHHHHHCCCCEEE IKVIDGGSTFNGDLVSWGLQIIGTP EEEEECCCCCCCCCEEECEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1468618 [H]