| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is 42521978
Identifier: 42521978
GI number: 42521978
Start: 338050
End: 338643
Strand: Direct
Name: 42521978
Synonym: Bd0361
Alternate gene names: NA
Gene position: 338050-338643 (Clockwise)
Preceding gene: 42521977
Following gene: 42521979
Centisome position: 8.94
GC content: 47.64
Gene sequence:
>594_bases ATGAAGTTTGTCGTTGGCCTTCTAGTGTCTGTATTTGCTGTTTCAGCTCACACTCAAGTTCTTGGCAAAATCAAAGGTGC CGGTGAAATGACGGCGAAGTACTTCCGTTTGGATGGTTCTGCGGATGTTCGCAATGTGAAGTGCACGGTCGCTTTGAATC TGGATCAAACGGCTGACGTGGTTGAGCTTGGTTTTTCTTTCTATGAGTGTGAACAGCTGGGTGGTTGGAATGATCTGCCA GTGTCCTTGAAAATTGATGGCAACAAGCTGGTAAACTCTAAAGGCATCGAGCAGGGGCGTATCTATGCGGACGGCACGTT GGAGTTCACAAGTCTTTCCCGTTCCAAGGTGACTTATCACGATGAAAAGTACGATGGCTTCTGCCGCTTGTATTCCATGG ATAAAAAGACCCTGAATCTGGACACCGTGATCAAGTACACGTTTGTGAAAACAGCGACAGGTTACCAGATGAACCGCGAG GTTTCTGAAGACCGTCTGGCTTATAAATCCCGTCGTGATTATCCACGATGTCCTGCGGTTGTGATCCCAACGGCGGTTAA AATGACCTCCAGTCTCAATGCGGGTCTAAAGTAA
Upstream 100 bases:
>100_bases TTTACACCTACACCGCATCATTCTTTCTGTCTTTAAAGTTGATCCCCCGGTGGCCTCTCGATAAGGTCCAAACAATTACC ACTCTATTCCTGGGGGATTC
Downstream 100 bases:
>100_bases TATATCAGTTCGGGATTCTTTTCGTTTTTGAGGGGCTTGCATAGTCCCTCAATACTTTCCCCCTAACCTGATCCCATCAA ACGCACTTGTTCGTGCGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 197; Mature: 197
Protein sequence:
>197_residues MKFVVGLLVSVFAVSAHTQVLGKIKGAGEMTAKYFRLDGSADVRNVKCTVALNLDQTADVVELGFSFYECEQLGGWNDLP VSLKIDGNKLVNSKGIEQGRIYADGTLEFTSLSRSKVTYHDEKYDGFCRLYSMDKKTLNLDTVIKYTFVKTATGYQMNRE VSEDRLAYKSRRDYPRCPAVVIPTAVKMTSSLNAGLK
Sequences:
>Translated_197_residues MKFVVGLLVSVFAVSAHTQVLGKIKGAGEMTAKYFRLDGSADVRNVKCTVALNLDQTADVVELGFSFYECEQLGGWNDLP VSLKIDGNKLVNSKGIEQGRIYADGTLEFTSLSRSKVTYHDEKYDGFCRLYSMDKKTLNLDTVIKYTFVKTATGYQMNRE VSEDRLAYKSRRDYPRCPAVVIPTAVKMTSSLNAGLK >Mature_197_residues MKFVVGLLVSVFAVSAHTQVLGKIKGAGEMTAKYFRLDGSADVRNVKCTVALNLDQTADVVELGFSFYECEQLGGWNDLP VSLKIDGNKLVNSKGIEQGRIYADGTLEFTSLSRSKVTYHDEKYDGFCRLYSMDKKTLNLDTVIKYTFVKTATGYQMNRE VSEDRLAYKSRRDYPRCPAVVIPTAVKMTSSLNAGLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21923; Mature: 21923
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFVVGLLVSVFAVSAHTQVLGKIKGAGEMTAKYFRLDGSADVRNVKCTVALNLDQTADV CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCHHH VELGFSFYECEQLGGWNDLPVSLKIDGNKLVNSKGIEQGRIYADGTLEFTSLSRSKVTYH HHHCCCCEEHHHCCCCCCCCEEEEECCCEEECCCCCCCCEEEECCEEEEEECCCCEEEEC DEKYDGFCRLYSMDKKTLNLDTVIKYTFVKTATGYQMNREVSEDRLAYKSRRDYPRCPAV CCCCCCEEEEEECCCCEECHHHEEEEEEEEECCCCEECCCCCHHHHHHHHCCCCCCCCEE VIPTAVKMTSSLNAGLK EECCHHHHHHCCCCCCC >Mature Secondary Structure MKFVVGLLVSVFAVSAHTQVLGKIKGAGEMTAKYFRLDGSADVRNVKCTVALNLDQTADV CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCHHH VELGFSFYECEQLGGWNDLPVSLKIDGNKLVNSKGIEQGRIYADGTLEFTSLSRSKVTYH HHHCCCCEEHHHCCCCCCCCEEEEECCCEEECCCCCCCCEEEECCEEEEEECCCCEEEEC DEKYDGFCRLYSMDKKTLNLDTVIKYTFVKTATGYQMNREVSEDRLAYKSRRDYPRCPAV CCCCCCEEEEEECCCCEECHHHEEEEEEEEECCCCEECCCCCHHHHHHHHCCCCCCCCEE VIPTAVKMTSSLNAGLK EECCHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA