| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42521887
Identifier: 42521887
GI number: 42521887
Start: 251519
End: 252796
Strand: Direct
Name: 42521887
Synonym: Bd0263
Alternate gene names: NA
Gene position: 251519-252796 (Clockwise)
Preceding gene: 42521886
Following gene: 42521889
Centisome position: 6.65
GC content: 50.94
Gene sequence:
>1278_bases ATGGCAGGAACCACAATAATCACCAAGTCTCTTTTGTTGGCAGCACTTTTGATTCTGGCGGCATGTGCACCAGCCAATGA TTTCCCGGCGATTGATGAAACCGGCAACGAAAGCGCCTCGATTGTTCCACCGACTCCTGAAGTGGAGTCCCCGGAAGAAG AAGCGGGCGGCAATACCGGTGCAGGCGGTGGTTCAGCGGTCGCCAGTCAGAAGTTGTTGCTAAATCAGGCCATGACTCTG CGCTATGAAAAATCCGGTATCCTTGAAAATAAGGTCGAACTTCCCCCGGGAACCCAGATCGAAGTTCCGTCCAATTACGA AGTCAAACATCTGGATTACCGCACCTCCAGCGGAGCCATTGAAAGATCCAGCACCGGATTTCTGTATCCGGTGAAGATCG TTTCTGTCACTGATGCGTTCAAAACGCAGTTCCCGCAAAGCAAGATTGATGAAATCAACAAAACCTCGGGTGGACTGTTT GTTTTTGCTTCCATCGTTGGAAACCTGGAAGGAACCGAAGGCAACTTTGCAGTGGTTCAAGCGGCCTCTCCGGGGGAAGG CTTTCTGAAGTATTATCAGCCCAGCGGAAAGCCGAAGTTCAACTATGTCACTTCTGTGACCAAACGGTTTGGTGCGAAAC TAAATCAGGGTGTAAAGCCTGAATCAATGTCAGCGGCTCAGCGTGAAAAGTACCAGAGCATCTTTGCAGAATTGCAGAAA GCGGTAAACCGTGAAGTGGCCACGCCCAAGTCTTATTTGATGATCGATAAAAAGGTCGCGACCCAAAGATCCATCGACTT TGAAAAAACCGGAGCGATCACAACCACCGGGGCCTGGAGCATTGCGACTCAAGGCACGGCGGTTCGCCACGGGTTTGCGA ATGTTCCTTGTGCAGAATTTCAGTCGGAACTTTTGCGTCAGGCTTATCAGCGCGCAGGCTATCGTGTGACGGATGACTTT AACAAAACCAAAGGCAATCAGCTGATCTGGTCCAGCACTGCGGCGGTCGTGAACTATTCCATGGCCCTTTACAAGGCGGG CTGGATCGCCTGGGATTCCACAAAGTATCGCCCGATTTTGGGTGCGATCATGATGAATGGCGCAGGTTATACTCCGGGGC ATACTTATATTTCCGGCAGCAATGACGGTTTGATCATCGTGGATAACGGCGCCCCTCAGGGCCGGGATTTAAGAAAAACG ACAGATAAAACGATTTCCATCATGTTCCAAGTGGGTGTGTTCTTCCTTCCTCCGGGAATCAACCCGCCCGCTTGGTAA
Upstream 100 bases:
>100_bases TCTGCACTTGCAGTCAATCTGGTGAAAAAAGTTTTTACACCTCCAAAAACATTAAATTCCTAATGTGAGTCGGCCGAAGA CCTCTGTGAACGGAGGTCCC
Downstream 100 bases:
>100_bases GCGTCAGCACATTTCCCAGCAGACACAGAACCACACCCAGGATGATATAAGGCGTCCAGTGGAAGTTCTCAAAGAAACTG GAAAGTGTCAGAGCAATCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 425; Mature: 424
Protein sequence:
>425_residues MAGTTIITKSLLLAALLILAACAPANDFPAIDETGNESASIVPPTPEVESPEEEAGGNTGAGGGSAVASQKLLLNQAMTL RYEKSGILENKVELPPGTQIEVPSNYEVKHLDYRTSSGAIERSSTGFLYPVKIVSVTDAFKTQFPQSKIDEINKTSGGLF VFASIVGNLEGTEGNFAVVQAASPGEGFLKYYQPSGKPKFNYVTSVTKRFGAKLNQGVKPESMSAAQREKYQSIFAELQK AVNREVATPKSYLMIDKKVATQRSIDFEKTGAITTTGAWSIATQGTAVRHGFANVPCAEFQSELLRQAYQRAGYRVTDDF NKTKGNQLIWSSTAAVVNYSMALYKAGWIAWDSTKYRPILGAIMMNGAGYTPGHTYISGSNDGLIIVDNGAPQGRDLRKT TDKTISIMFQVGVFFLPPGINPPAW
Sequences:
>Translated_425_residues MAGTTIITKSLLLAALLILAACAPANDFPAIDETGNESASIVPPTPEVESPEEEAGGNTGAGGGSAVASQKLLLNQAMTL RYEKSGILENKVELPPGTQIEVPSNYEVKHLDYRTSSGAIERSSTGFLYPVKIVSVTDAFKTQFPQSKIDEINKTSGGLF VFASIVGNLEGTEGNFAVVQAASPGEGFLKYYQPSGKPKFNYVTSVTKRFGAKLNQGVKPESMSAAQREKYQSIFAELQK AVNREVATPKSYLMIDKKVATQRSIDFEKTGAITTTGAWSIATQGTAVRHGFANVPCAEFQSELLRQAYQRAGYRVTDDF NKTKGNQLIWSSTAAVVNYSMALYKAGWIAWDSTKYRPILGAIMMNGAGYTPGHTYISGSNDGLIIVDNGAPQGRDLRKT TDKTISIMFQVGVFFLPPGINPPAW >Mature_424_residues AGTTIITKSLLLAALLILAACAPANDFPAIDETGNESASIVPPTPEVESPEEEAGGNTGAGGGSAVASQKLLLNQAMTLR YEKSGILENKVELPPGTQIEVPSNYEVKHLDYRTSSGAIERSSTGFLYPVKIVSVTDAFKTQFPQSKIDEINKTSGGLFV FASIVGNLEGTEGNFAVVQAASPGEGFLKYYQPSGKPKFNYVTSVTKRFGAKLNQGVKPESMSAAQREKYQSIFAELQKA VNREVATPKSYLMIDKKVATQRSIDFEKTGAITTTGAWSIATQGTAVRHGFANVPCAEFQSELLRQAYQRAGYRVTDDFN KTKGNQLIWSSTAAVVNYSMALYKAGWIAWDSTKYRPILGAIMMNGAGYTPGHTYISGSNDGLIIVDNGAPQGRDLRKTT DKTISIMFQVGVFFLPPGINPPAW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45744; Mature: 45613
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGTTIITKSLLLAALLILAACAPANDFPAIDETGNESASIVPPTPEVESPEEEAGGNTG CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHCCCCCC AGGGSAVASQKLLLNQAMTLRYEKSGILENKVELPPGTQIEVPSNYEVKHLDYRTSSGAI CCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCC ERSSTGFLYPVKIVSVTDAFKTQFPQSKIDEINKTSGGLFVFASIVGNLEGTEGNFAVVQ CCCCCCEEEEEEEEEEHHHHHHCCCHHHHHHHCCCCCCEEEEEEHHCCCCCCCCCEEEEE AASPGEGFLKYYQPSGKPKFNYVTSVTKRFGAKLNQGVKPESMSAAQREKYQSIFAELQK ECCCCCCHHHEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH AVNREVATPKSYLMIDKKVATQRSIDFEKTGAITTTGAWSIATQGTAVRHGFANVPCAEF HHHHHHCCCHHHEEEEHHHHHHHCCCCHHCCCEEECCCEEEECCCCHHHCCCCCCCHHHH QSELLRQAYQRAGYRVTDDFNKTKGNQLIWSSTAAVVNYSMALYKAGWIAWDSTKYRPIL HHHHHHHHHHHCCCEEECCCCCCCCCEEEEECHHHHHHHHHHHHHCCEEEECCCCCCHHH GAIMMNGAGYTPGHTYISGSNDGLIIVDNGAPQGRDLRKTTDKTISIMFQVGVFFLPPGI HHHEECCCCCCCCCCEEECCCCCEEEEECCCCCCCCHHHHHHHHHEEEEEECEEEECCCC NPPAW CCCCC >Mature Secondary Structure AGTTIITKSLLLAALLILAACAPANDFPAIDETGNESASIVPPTPEVESPEEEAGGNTG CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHCCCCCC AGGGSAVASQKLLLNQAMTLRYEKSGILENKVELPPGTQIEVPSNYEVKHLDYRTSSGAI CCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCC ERSSTGFLYPVKIVSVTDAFKTQFPQSKIDEINKTSGGLFVFASIVGNLEGTEGNFAVVQ CCCCCCEEEEEEEEEEHHHHHHCCCHHHHHHHCCCCCCEEEEEEHHCCCCCCCCCEEEEE AASPGEGFLKYYQPSGKPKFNYVTSVTKRFGAKLNQGVKPESMSAAQREKYQSIFAELQK ECCCCCCHHHEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH AVNREVATPKSYLMIDKKVATQRSIDFEKTGAITTTGAWSIATQGTAVRHGFANVPCAEF HHHHHHCCCHHHEEEEHHHHHHHCCCCHHCCCEEECCCEEEECCCCHHHCCCCCCCHHHH QSELLRQAYQRAGYRVTDDFNKTKGNQLIWSSTAAVVNYSMALYKAGWIAWDSTKYRPIL HHHHHHHHHHHCCCEEECCCCCCCCCEEEEECHHHHHHHHHHHHHCCEEEECCCCCCHHH GAIMMNGAGYTPGHTYISGSNDGLIIVDNGAPQGRDLRKTTDKTISIMFQVGVFFLPPGI HHHEECCCCCCCCCCEEECCCCCEEEEECCCCCCCCHHHHHHHHHEEEEEECEEEECCCC NPPAW CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA