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The map label for this gene is xseB

Identifier: 42521828

GI number: 42521828

Start: 184857

End: 185081

Strand: Direct

Name: xseB

Synonym: Bd0198

Alternate gene names: 42521828

Gene position: 184857-185081 (Clockwise)

Preceding gene: 42521827

Following gene: 42521829

Centisome position: 4.89

GC content: 47.56

Gene sequence:

>225_bases
ATGGATTTTGAGAAGAAACTAGGCCGTCTTGAAGAGATCGTGCAAAAGATGGAAAAAGGCGATCTGGCTTTGGAAGAGTC
TTTGAAGCTGTTCGAGGAAGGTGTGAAGCTTTCCCGCGAATGCCATCAGCGTCTGAATGAAGCTGAATCCAAAGTGAAAC
TGTTGATGTCTGTGGGAGCTGACGGCCAGCCGGTGACCACTGATTTCACTTCAGAGGAGAACTAA

Upstream 100 bases:

>100_bases
ATTAAATCTGCGAGTCAGGTGAAAAAGGGAGACCTTTTGGATATCCGCCTGGCTCAGGGCTCAGTGACCGCCATCGTGGA
TGGCGTGAAGGAGGAATAGA

Downstream 100 bases:

>100_bases
GCCTTGGATCTCGCAATTCAGATTGATCAGGAAATCGCCGCGCGCACCCAGGCTGTGAACCAGTTTGTGGAAAAATATCT
GTCTGACATGGAGCTACCAG

Product: exodeoxyribonuclease VII, small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 74; Mature: 74

Protein sequence:

>74_residues
MDFEKKLGRLEEIVQKMEKGDLALEESLKLFEEGVKLSRECHQRLNEAESKVKLLMSVGADGQPVTTDFTSEEN

Sequences:

>Translated_74_residues
MDFEKKLGRLEEIVQKMEKGDLALEESLKLFEEGVKLSRECHQRLNEAESKVKLLMSVGADGQPVTTDFTSEEN
>Mature_74_residues
MDFEKKLGRLEEIVQKMEKGDLALEESLKLFEEGVKLSRECHQRLNEAESKVKLLMSVGADGQPVTTDFTSEEN

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

Organism=Escherichia coli, GI1786624, Length=68, Percent_Identity=47.0588235294118, Blast_Score=62, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_BDEBA (Q6MR96)

Other databases:

- EMBL:   BX842646
- RefSeq:   NP_967208.1
- ProteinModelPortal:   Q6MR96
- SMR:   Q6MR96
- GeneID:   2733606
- GenomeReviews:   BX842601_GR
- KEGG:   bba:Bd0198
- NMPDR:   fig|264462.1.peg.178
- HOGENOM:   HBG728416
- OMA:   CSKKLNE
- BioCyc:   BBAC264462:BD0198-MONOMER
- BRENDA:   3.1.11.6
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8414; Mature: 8414

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFEKKLGRLEEIVQKMEKGDLALEESLKLFEEGVKLSRECHQRLNEAESKVKLLMSVGA
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DGQPVTTDFTSEEN
CCCCCCCCCCCCCC
>Mature Secondary Structure
MDFEKKLGRLEEIVQKMEKGDLALEESLKLFEEGVKLSRECHQRLNEAESKVKLLMSVGA
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DGQPVTTDFTSEEN
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA