Click here to switch to the map view.

The map label for this gene is NifU [H]

Identifier: 42521822

GI number: 42521822

Start: 176720

End: 177280

Strand: Direct

Name: NifU [H]

Synonym: Bd0190

Alternate gene names: 42521822

Gene position: 176720-177280 (Clockwise)

Preceding gene: 42521821

Following gene: 42521823

Centisome position: 4.67

GC content: 52.23

Gene sequence:

>561_bases
ATGAGCACCCAAGATGTACTGATTCGTATTCAGGCAACTCCGAACCCCAATGCGTGGAAATTCGTTTTGGATCGCGCCGT
CTTGAATGACGGCAAGGCGACCTATGCTGATGCCAAGGAAGCTGAGCAGAGCATTCTGGCGTCTTCCTTGTTCCAGGTGG
AGGGTGTTCGTCAGGTTCACTTCTTCCAGAACGTGATCACGATCACGCATAATTTCGATGCGGATCCGGAAGAGATTCAA
CGCAACGTTTGTTCGGTGATTCAGACCCGCATGCCGGCGCATAATCCGGCGGTGACCCAGATGGATGAAAAGAAGCTTCG
CCGTGCCAGCCTGCCGCCGGAAGTCCAGCAGATCGAAGAGATTCTGGACCAAACGGTCCGTCCCGGTTTGCAAGGTGACG
GCGGGGACTTGGATGTGGTGAAATATGAAGACAACAAGCTCTATGTCTTTTATCAGGGAGCTTGTGGAACCTGCCCGAGT
GCCACTTCAGGTACACTGATGGCCATCGAGGGAATTTTGCGGGATCAATTCAATCCAACAATTGAAGTTATCCCGATGTG
A

Upstream 100 bases:

>100_bases
GAGTTCCCGGCACCGTCAGAGCATCCCTTTCAGTGTATAATAATCGTGAAGATATTGATTCTATGGTTAAAGCCGTGGTG
AAAGCCCGGGAGATGTTGTT

Downstream 100 bases:

>100_bases
GGATGAATGCAGTCAGCGCAAGGTGCTCAGAAGCAAACTCCGGACAAGGTTGAAAGATTTCGTCTGTTGTGTGAGCGCCT
CGCCCTGGTTCTGCAAAAAG

Product: putative nitrogen-fixing protein NifU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MSTQDVLIRIQATPNPNAWKFVLDRAVLNDGKATYADAKEAEQSILASSLFQVEGVRQVHFFQNVITITHNFDADPEEIQ
RNVCSVIQTRMPAHNPAVTQMDEKKLRRASLPPEVQQIEEILDQTVRPGLQGDGGDLDVVKYEDNKLYVFYQGACGTCPS
ATSGTLMAIEGILRDQFNPTIEVIPM

Sequences:

>Translated_186_residues
MSTQDVLIRIQATPNPNAWKFVLDRAVLNDGKATYADAKEAEQSILASSLFQVEGVRQVHFFQNVITITHNFDADPEEIQ
RNVCSVIQTRMPAHNPAVTQMDEKKLRRASLPPEVQQIEEILDQTVRPGLQGDGGDLDVVKYEDNKLYVFYQGACGTCPS
ATSGTLMAIEGILRDQFNPTIEVIPM
>Mature_185_residues
STQDVLIRIQATPNPNAWKFVLDRAVLNDGKATYADAKEAEQSILASSLFQVEGVRQVHFFQNVITITHNFDADPEEIQR
NVCSVIQTRMPAHNPAVTQMDEKKLRRASLPPEVQQIEEILDQTVRPGLQGDGGDLDVVKYEDNKLYVFYQGACGTCPSA
TSGTLMAIEGILRDQFNPTIEVIPM

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0694

COG function: function code O; Thioredoxin-like proteins and domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI50593025, Length=171, Percent_Identity=31.5789473684211, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI50593021, Length=171, Percent_Identity=31.5789473684211, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17541876, Length=179, Percent_Identity=32.9608938547486, Blast_Score=88, Evalue=2e-18,
Organism=Drosophila melanogaster, GI45551492, Length=163, Percent_Identity=33.7423312883436, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24643765, Length=163, Percent_Identity=33.7423312883436, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI45556188, Length=163, Percent_Identity=33.7423312883436, Blast_Score=84, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001075
- ProDom:   PD002830 [H]

Pfam domain/function: PF01106 NifU [H]

EC number: NA

Molecular weight: Translated: 20705; Mature: 20573

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTQDVLIRIQATPNPNAWKFVLDRAVLNDGKATYADAKEAEQSILASSLFQVEGVRQVH
CCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHH
FFQNVITITHNFDADPEEIQRNVCSVIQTRMPAHNPAVTQMDEKKLRRASLPPEVQQIEE
HHHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHH
ILDQTVRPGLQGDGGDLDVVKYEDNKLYVFYQGACGTCPSATSGTLMAIEGILRDQFNPT
HHHHHHCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCC
IEVIPM
EEEEEC
>Mature Secondary Structure 
STQDVLIRIQATPNPNAWKFVLDRAVLNDGKATYADAKEAEQSILASSLFQVEGVRQVH
CCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHH
FFQNVITITHNFDADPEEIQRNVCSVIQTRMPAHNPAVTQMDEKKLRRASLPPEVQQIEE
HHHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHH
ILDQTVRPGLQGDGGDLDVVKYEDNKLYVFYQGACGTCPSATSGTLMAIEGILRDQFNPT
HHHHHHCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCC
IEVIPM
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8424961 [H]