| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is groES [H]
Identifier: 42521742
GI number: 42521742
Start: 90797
End: 91099
Strand: Direct
Name: groES [H]
Synonym: Bd0097
Alternate gene names: 42521742
Gene position: 90797-91099 (Clockwise)
Preceding gene: 42521741
Following gene: 42521743
Centisome position: 2.4
GC content: 45.21
Gene sequence:
>303_bases ATGGCTAAGAACGAAATTGGCGTTCGCCCACTTCATGACAGAATTCTAGTTCGCAGAATGGCGGAAGAAGAAAAAACCGC TGGCGGTCTTTTCATTCCTGACACTGCAAAAGAAAAACCACAAAAAGGCGAAATCATCGCGACTGGCAAAGGCCGCGTAA CTGAAGATGGCAAGATCCTTCCATTGGAAGTTAAAGTTGGCGATAAAGTTCTTTTCGGCAAATACGCTGGAACTGAATTG AAACTGGATGGCGCTGAATACCTGATGATGCGCGAAGAAGACATCCTGGGCGTATTTAACTAA
Upstream 100 bases:
>100_bases GGAAAATTGGGCGCCCGACCTTGACTCTTTCCACAGCCGATTCATATTAGCTTCCGTAAATACAGTTTATACATAACTGA GTTTTAAACGGAGGCTCACA
Downstream 100 bases:
>100_bases ATCTAAATATCTACTCCAGCGAAGCTGGAGTGAATAAGAATTGAACGGAGACAATCATGAGTAAAGTAATCACATTCTCA GAAGACGCTCGTACACACAT
Product: chaperonin groES
Products: NA
Alternate protein names: GroES protein; Protein Cpn10 [H]
Number of amino acids: Translated: 100; Mature: 99
Protein sequence:
>100_residues MAKNEIGVRPLHDRILVRRMAEEEKTAGGLFIPDTAKEKPQKGEIIATGKGRVTEDGKILPLEVKVGDKVLFGKYAGTEL KLDGAEYLMMREEDILGVFN
Sequences:
>Translated_100_residues MAKNEIGVRPLHDRILVRRMAEEEKTAGGLFIPDTAKEKPQKGEIIATGKGRVTEDGKILPLEVKVGDKVLFGKYAGTEL KLDGAEYLMMREEDILGVFN >Mature_99_residues AKNEIGVRPLHDRILVRRMAEEEKTAGGLFIPDTAKEKPQKGEIIATGKGRVTEDGKILPLEVKVGDKVLFGKYAGTELK LDGAEYLMMREEDILGVFN
Specific function: Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter [H]
COG id: COG0234
COG function: function code O; Co-chaperonin GroES (HSP10)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GroES chaperonin family [H]
Homologues:
Organism=Homo sapiens, GI4504523, Length=88, Percent_Identity=44.3181818181818, Blast_Score=72, Evalue=1e-13, Organism=Homo sapiens, GI169210012, Length=88, Percent_Identity=40.9090909090909, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1790585, Length=95, Percent_Identity=44.2105263157895, Blast_Score=89, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17555568, Length=92, Percent_Identity=41.304347826087, Blast_Score=82, Evalue=6e-17, Organism=Saccharomyces cerevisiae, GI6324594, Length=99, Percent_Identity=37.3737373737374, Blast_Score=70, Evalue=7e-14, Organism=Drosophila melanogaster, GI21358317, Length=92, Percent_Identity=40.2173913043478, Blast_Score=63, Evalue=3e-11, Organism=Drosophila melanogaster, GI21356029, Length=90, Percent_Identity=40, Blast_Score=62, Evalue=5e-11,
Paralogues:
None
Copy number: 980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5720 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 1274 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020818 - InterPro: IPR018369 - InterPro: IPR011032 [H]
Pfam domain/function: PF00166 Cpn10 [H]
EC number: NA
Molecular weight: Translated: 11085; Mature: 10954
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: PS00681 CHAPERONINS_CPN10
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKNEIGVRPLHDRILVRRMAEEEKTAGGLFIPDTAKEKPQKGEIIATGKGRVTEDGKIL CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCEEECCCCEECCCCCEE PLEVKVGDKVLFGKYAGTELKLDGAEYLMMREEDILGVFN EEEEEECCEEEEEECCCCEEEECCCEEEEEECCCEEEECC >Mature Secondary Structure AKNEIGVRPLHDRILVRRMAEEEKTAGGLFIPDTAKEKPQKGEIIATGKGRVTEDGKIL CCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCEEECCCCEECCCCCEE PLEVKVGDKVLFGKYAGTELKLDGAEYLMMREEDILGVFN EEEEEECCEEEEEECCCCEEEECCCEEEEEECCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA