| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42521701
Identifier: 42521701
GI number: 42521701
Start: 47846
End: 49267
Strand: Direct
Name: 42521701
Synonym: Bd0054
Alternate gene names: NA
Gene position: 47846-49267 (Clockwise)
Preceding gene: 42521699
Following gene: 42521702
Centisome position: 1.26
GC content: 49.86
Gene sequence:
>1422_bases ATGGCGTCGCACACTGCGATCATCAGTGATTTGCATTTGTGTGAAGCCGAGCCTGTGAACCTGCGCTTCCCGCTGTGGAA GAAATTCAAGACGCGGCAGTTCTTCTTTGATGACACGTTTGAAGTGTTTTTGAAAAGCTGTGAAGAAAAGGCGCAAGGCG CCTCGGTGGAGCTTGTTCTGAACGGGGATATTTTTGATTTTGACAGTGTCCTGCGTTTGCCGGATGAACCGGTCTTTCAT GTCAGCGGTCTTGAAAAGCGCCGCGGGCTGTTTCCGATTGAAGAGCGATCCCGATTTAAAATTGAAGTGATTCTGAAAGA CCATGCCGACTGGGTTCGCGCCCTGCGTGAATTTGTACTACGGGGCAACCGTGCCGTCTTTGTGATTGGCAACCACGATC TGGAGCTTCACTTCCCGGAAGTGCAGGCCGAGATCTATCGTCATCTGAACTTGCCGGAAGACAAAAAACATCAGGTTCGT TTTGTGGAGTGGTTCTATATCAGCAATCAGGACACATTGATTGAACACGGCAATCAGTATGATCCGTATTGCATGTGTGA AGACCCCATCAATCCGTTTGTTCGCGGATACAATTTTGTTTCGCTGAAACTGCCGTTTGGAAATCTGGCCTGTCGTTATC TGATGAACGGAATGGGCTTCTTCAATCCGCATGTGGACAGCAACTACATCATGAGTATTCCGCAGTACATAAAGTTCTTT GTGAAATACATGCTGCGCGCGCAGCCGGGACTGGTGCTGACCTGGTTCTGGGGATCCGTGCTGACACTGCTTCATTCCTT CTATGACCGTCTGGCGGCGCCGATCAGAAATCCATTGAAGATTGAAGACCGCGTGTCTTTGATTGCTGAAAAATCAAATG CCGAACCCCGCATGGTGCGAGAACTGAAAGAGTTGTTTGTGGCTCCGGCCGCCAGCAATCCGTTTTTACTGGCGCGTGAA CTGTGGCTGGATCGTGCGTTTATTATCTTTGTCGCTTTCTATCTGATCTTCCAGTTGATGATCTTTGTCCGGGCTATTTA TGAAATCTCGTTCTTCTGGGCTTTCATTCCGTTGTTCTTGCTGCTGCCGTTTTTCCTATTCTACAGCAAGTCGGTGACCT CCCTCGTGTCTGGCTACAAAGAACCTGATGACCGGGTGATGGCTATGACCAGTGCAATCACCAAGGTGAATCGCATCGTT TACGGGCACACTCATCATACCCGCCATGAAATGATCGGGTCCGTCGAACACTTGAACAGCGGGTGCTGGTCACCGGCCTT TTTGGATGTGGAATGCACCAAGCCGTTGGATCAAAAAACATTCGTGTGGATATCTCCGGGAGAGGCCGGAACCCGTCAGG CAGAGCTTTTCAAGTTCGTGGATGGAAAACCGGAGCTGTTAATGAACCCGGGGCGCTCTTAA
Upstream 100 bases:
>100_bases GGAGTCTTCAGGTTCTTGATAAATTCTTTCATCTGCACGATCATAGACTTGGGAGGCAGATTTGCCCACTTCTTTTTCAA GACCTTTTCCTGATTTTAAA
Downstream 100 bases:
>100_bases ATTAGTGCGCCGCAAGAAGATTTCATATTGTCATTCACAGGACCCTATGCAAACCTTTTATCTGTTCGATTAACATGGAT GGAGAGGTATATCATGGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 473; Mature: 472
Protein sequence:
>473_residues MASHTAIISDLHLCEAEPVNLRFPLWKKFKTRQFFFDDTFEVFLKSCEEKAQGASVELVLNGDIFDFDSVLRLPDEPVFH VSGLEKRRGLFPIEERSRFKIEVILKDHADWVRALREFVLRGNRAVFVIGNHDLELHFPEVQAEIYRHLNLPEDKKHQVR FVEWFYISNQDTLIEHGNQYDPYCMCEDPINPFVRGYNFVSLKLPFGNLACRYLMNGMGFFNPHVDSNYIMSIPQYIKFF VKYMLRAQPGLVLTWFWGSVLTLLHSFYDRLAAPIRNPLKIEDRVSLIAEKSNAEPRMVRELKELFVAPAASNPFLLARE LWLDRAFIIFVAFYLIFQLMIFVRAIYEISFFWAFIPLFLLLPFFLFYSKSVTSLVSGYKEPDDRVMAMTSAITKVNRIV YGHTHHTRHEMIGSVEHLNSGCWSPAFLDVECTKPLDQKTFVWISPGEAGTRQAELFKFVDGKPELLMNPGRS
Sequences:
>Translated_473_residues MASHTAIISDLHLCEAEPVNLRFPLWKKFKTRQFFFDDTFEVFLKSCEEKAQGASVELVLNGDIFDFDSVLRLPDEPVFH VSGLEKRRGLFPIEERSRFKIEVILKDHADWVRALREFVLRGNRAVFVIGNHDLELHFPEVQAEIYRHLNLPEDKKHQVR FVEWFYISNQDTLIEHGNQYDPYCMCEDPINPFVRGYNFVSLKLPFGNLACRYLMNGMGFFNPHVDSNYIMSIPQYIKFF VKYMLRAQPGLVLTWFWGSVLTLLHSFYDRLAAPIRNPLKIEDRVSLIAEKSNAEPRMVRELKELFVAPAASNPFLLARE LWLDRAFIIFVAFYLIFQLMIFVRAIYEISFFWAFIPLFLLLPFFLFYSKSVTSLVSGYKEPDDRVMAMTSAITKVNRIV YGHTHHTRHEMIGSVEHLNSGCWSPAFLDVECTKPLDQKTFVWISPGEAGTRQAELFKFVDGKPELLMNPGRS >Mature_472_residues ASHTAIISDLHLCEAEPVNLRFPLWKKFKTRQFFFDDTFEVFLKSCEEKAQGASVELVLNGDIFDFDSVLRLPDEPVFHV SGLEKRRGLFPIEERSRFKIEVILKDHADWVRALREFVLRGNRAVFVIGNHDLELHFPEVQAEIYRHLNLPEDKKHQVRF VEWFYISNQDTLIEHGNQYDPYCMCEDPINPFVRGYNFVSLKLPFGNLACRYLMNGMGFFNPHVDSNYIMSIPQYIKFFV KYMLRAQPGLVLTWFWGSVLTLLHSFYDRLAAPIRNPLKIEDRVSLIAEKSNAEPRMVRELKELFVAPAASNPFLLAREL WLDRAFIIFVAFYLIFQLMIFVRAIYEISFFWAFIPLFLLLPFFLFYSKSVTSLVSGYKEPDDRVMAMTSAITKVNRIVY GHTHHTRHEMIGSVEHLNSGCWSPAFLDVECTKPLDQKTFVWISPGEAGTRQAELFKFVDGKPELLMNPGRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55171; Mature: 55039
Theoretical pI: Translated: 6.95; Mature: 6.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASHTAIISDLHLCEAEPVNLRFPLWKKFKTRQFFFDDTFEVFLKSCEEKAQGASVELVL CCCCHHHHHHHHHCCCCCCCEECCHHHHHCCCCEECCCHHHHHHHHHHHHHCCCEEEEEE NGDIFDFDSVLRLPDEPVFHVSGLEKRRGLFPIEERSRFKIEVILKDHADWVRALREFVL CCCEECCHHHHCCCCCCEEECCCCHHHCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHH RGNRAVFVIGNHDLELHFPEVQAEIYRHLNLPEDKKHQVRFVEWFYISNQDTLIEHGNQY CCCCEEEEEECCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCHHHHCCCCC DPYCMCEDPINPFVRGYNFVSLKLPFGNLACRYLMNGMGFFNPHVDSNYIMSIPQYIKFF CCEEEECCCCCHHHCCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH VKYMLRAQPGLVLTWFWGSVLTLLHSFYDRLAAPIRNPLKIEDRVSLIAEKSNAEPRMVR HHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHH ELKELFVAPAASNPFLLARELWLDRAFIIFVAFYLIFQLMIFVRAIYEISFFWAFIPLFL HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLPFFLFYSKSVTSLVSGYKEPDDRVMAMTSAITKVNRIVYGHTHHTRHEMIGSVEHLNS HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHCC GCWSPAFLDVECTKPLDQKTFVWISPGEAGTRQAELFKFVDGKPELLMNPGRS CCCCCEEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCEECCCCCC >Mature Secondary Structure ASHTAIISDLHLCEAEPVNLRFPLWKKFKTRQFFFDDTFEVFLKSCEEKAQGASVELVL CCCHHHHHHHHHCCCCCCCEECCHHHHHCCCCEECCCHHHHHHHHHHHHHCCCEEEEEE NGDIFDFDSVLRLPDEPVFHVSGLEKRRGLFPIEERSRFKIEVILKDHADWVRALREFVL CCCEECCHHHHCCCCCCEEECCCCHHHCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHH RGNRAVFVIGNHDLELHFPEVQAEIYRHLNLPEDKKHQVRFVEWFYISNQDTLIEHGNQY CCCCEEEEEECCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCHHHHCCCCC DPYCMCEDPINPFVRGYNFVSLKLPFGNLACRYLMNGMGFFNPHVDSNYIMSIPQYIKFF CCEEEECCCCCHHHCCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH VKYMLRAQPGLVLTWFWGSVLTLLHSFYDRLAAPIRNPLKIEDRVSLIAEKSNAEPRMVR HHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHH ELKELFVAPAASNPFLLARELWLDRAFIIFVAFYLIFQLMIFVRAIYEISFFWAFIPLFL HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLPFFLFYSKSVTSLVSGYKEPDDRVMAMTSAITKVNRIVYGHTHHTRHEMIGSVEHLNS HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHCC GCWSPAFLDVECTKPLDQKTFVWISPGEAGTRQAELFKFVDGKPELLMNPGRS CCCCCEEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA