| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is 42521699
Identifier: 42521699
GI number: 42521699
Start: 44375
End: 46489
Strand: Direct
Name: 42521699
Synonym: Bd0051
Alternate gene names: NA
Gene position: 44375-46489 (Clockwise)
Preceding gene: 42521698
Following gene: 42521701
Centisome position: 1.17
GC content: 51.82
Gene sequence:
>2115_bases TTGCAAGGAATGCGACTGAAGCGGTTCATATTACCGCTCCTGGTATTAGCTGGAAGCTTATACTGGTCAAGCCCCACAGG TGGCTTGAAGTTCATACCTATTTATGAAGCCCTCACCATCAAAGCTCAGAAAAATTCTCCACCACATATCGCCTTTGAAG AACTGCTGGAATCCGAGAGGCAACTTGCAGAGTGGTCAAGAATCGAAAAAGTGAAACCATTGAATCTTGCCGCAGAAAAG TCCACCGCACCGCTGTTTGCGAAGCGTGTGGAAATCGCTGAAATGGTGATTCAAAAAACTCCGGAAAGATTTGTCGCGGA AGCACCATCCACAACAACGGTGGATGCCGATCCGACGGCATGGATGAATGATCTTTCCCCTGCTCAAGCCAAGCGTCTGC AAGCCGCTCAAAGCCGCAGCGAAGTGATGGGTCAGGACTGGAGCCAGCCAACGTGGTCTGACATGGCCAAAGAGGTTCTG GAAAAATCCGGCGTGATGACGGCGACAACATCCTCCAACCCACGTGTGTATGTGGCGGGTGTGGATGCTTCCGGCAAAGC CAACACCAAAATTCCCCAGGCTGAAGTGCGCATCCCGGATCGCAACAACCAACCCTCTGATGACGGCATGAATCCTTCCT ATGGTTTGGTGGAAGAACAAAGACCGGCGGGCATTCGCACGATCTCGGGTCCTTTGGAAATCACCGGCGGCCTGGCGGTC ACCAATGAACATCATATTGAAATCCGTCGCAGTGACGAAGGTGTCTTAAAAGAACTGGGCAAGGTCAATCTTGTTCAGGG TCAGTATAATATAGATGTCGAAGATGTGACCGGATCCATCATTGCCCGTCTGGTGGACAAAGAGGGTAAAACCCTGGGTG AAGGCAGCTTCCGCTTAAATCGTGTGGCCTCGATTGCGCAAAACCGTTTGCAGGGACCGAAGATTCGCATCGAACCACAT CCTGACTTTGGCGGCATTGTTACAAGTGCTTACAATCCAAAGCCGGATGATGCAGCTCCCGCCAAGACTCTGGTGACCTT TGTAAAAGGTGCCAAAGAAGTCGCACCGAAAAAAGACGGAGCCGTGGCGATGGATAATGTGACCAAAGGATCCACGACGG TGATGCGCGCGGCAGCGCCTTCGCACATGCAAACAGCGTCCATTGTGGTTTCGGGTCAGGAATTTAAGACGCCTCTTTAT CCGGCTTCGATGATCCAGGCCCTGCAGGACATTTTGAGCCAGCAAAGACAGATGTCCTTTGAAGGCGCACCAACCATCAT CTGGGGTAAGGTCAGCCTTGATGGCAAAACACTTTCCGGAATTGATGTGGTTGTCGAATCAGATCCAAGTCTTGTGCCGG TTTACTTTAATCAGTTCATGCTTCCGGATCCAAGTTTGAAATCCACCGGTGACAACGGTCTGTTTGCCTTTGTGAATGCG GAGCCAGGCTTCCATTCCCTGCTGGCAACCCGAGCCGAGGCAATTGTGGGTTATCAGAACGTGGTGGTGGAAGAAGGCTC TGTGGCTCAAGGGGACATTCAGTCCACTATGAAAAACGAAGCCGTTCCGCTGCGGGTGTATGACGCCTTTGCGGGCGATG CGGTTCCGGCCACCGTGACCATGCAAAGCTTGCAGAGCGAATTTGAAGTTCAGGGTGCCACGACGGTGACTTTGCCGAAC CTGAAGCGCTATGGTCTAATGCGAGTACAGCCTGAGGGCACCGACTATGTGGCGGCGAGATATGTTTACAATGACAACGA CGAATACGTGCACGCCCCGGTGGTTCGCTGGTCATGGCTGAGCGCTATCAAAGGTTATCTGAAGATTGATGATCTGCCGA CGGCGGGTGTGATTGTGGGCTTTGTTCCGGATGAAAACTTTGAAGTTTATCTGGCAGCATATGATTCATTCAACCCGCGC CAGATTGTGTACTTCGATATGCAAGGCCGTATCCTGCAAAATGGCAAGGGCATCGCGGGTGGTGGTTTCATTCTTTACAA CGTTCCTGAAGACATTCACGAAGTTGTGGTGGTGGGCGAAAGAACGCAGAAGATCTATTCCCGCGTTCTGCCCGTGGATC CAAACACGCTGTCCGTGCTTAGTTTCCGAGAGTAA
Upstream 100 bases:
>100_bases AACCAAAGTCGCGACAGTCGTAACGTCATTGACGACTTCCGTTCCTTCTAAATACGATAAAGGCTAGTCAGAAATGACTA TTCTTCAAATGAGGTGACTG
Downstream 100 bases:
>100_bases ATTCAGAAACACATTTCTTGAAATAGTTCCCGCGATCTTCAAAGGACTTGAATTCATCAAGACTGGTTCCGCCCGGGCTT AGTAATACTGTATCACCAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 704; Mature: 704
Protein sequence:
>704_residues MQGMRLKRFILPLLVLAGSLYWSSPTGGLKFIPIYEALTIKAQKNSPPHIAFEELLESERQLAEWSRIEKVKPLNLAAEK STAPLFAKRVEIAEMVIQKTPERFVAEAPSTTTVDADPTAWMNDLSPAQAKRLQAAQSRSEVMGQDWSQPTWSDMAKEVL EKSGVMTATTSSNPRVYVAGVDASGKANTKIPQAEVRIPDRNNQPSDDGMNPSYGLVEEQRPAGIRTISGPLEITGGLAV TNEHHIEIRRSDEGVLKELGKVNLVQGQYNIDVEDVTGSIIARLVDKEGKTLGEGSFRLNRVASIAQNRLQGPKIRIEPH PDFGGIVTSAYNPKPDDAAPAKTLVTFVKGAKEVAPKKDGAVAMDNVTKGSTTVMRAAAPSHMQTASIVVSGQEFKTPLY PASMIQALQDILSQQRQMSFEGAPTIIWGKVSLDGKTLSGIDVVVESDPSLVPVYFNQFMLPDPSLKSTGDNGLFAFVNA EPGFHSLLATRAEAIVGYQNVVVEEGSVAQGDIQSTMKNEAVPLRVYDAFAGDAVPATVTMQSLQSEFEVQGATTVTLPN LKRYGLMRVQPEGTDYVAARYVYNDNDEYVHAPVVRWSWLSAIKGYLKIDDLPTAGVIVGFVPDENFEVYLAAYDSFNPR QIVYFDMQGRILQNGKGIAGGGFILYNVPEDIHEVVVVGERTQKIYSRVLPVDPNTLSVLSFRE
Sequences:
>Translated_704_residues MQGMRLKRFILPLLVLAGSLYWSSPTGGLKFIPIYEALTIKAQKNSPPHIAFEELLESERQLAEWSRIEKVKPLNLAAEK STAPLFAKRVEIAEMVIQKTPERFVAEAPSTTTVDADPTAWMNDLSPAQAKRLQAAQSRSEVMGQDWSQPTWSDMAKEVL EKSGVMTATTSSNPRVYVAGVDASGKANTKIPQAEVRIPDRNNQPSDDGMNPSYGLVEEQRPAGIRTISGPLEITGGLAV TNEHHIEIRRSDEGVLKELGKVNLVQGQYNIDVEDVTGSIIARLVDKEGKTLGEGSFRLNRVASIAQNRLQGPKIRIEPH PDFGGIVTSAYNPKPDDAAPAKTLVTFVKGAKEVAPKKDGAVAMDNVTKGSTTVMRAAAPSHMQTASIVVSGQEFKTPLY PASMIQALQDILSQQRQMSFEGAPTIIWGKVSLDGKTLSGIDVVVESDPSLVPVYFNQFMLPDPSLKSTGDNGLFAFVNA EPGFHSLLATRAEAIVGYQNVVVEEGSVAQGDIQSTMKNEAVPLRVYDAFAGDAVPATVTMQSLQSEFEVQGATTVTLPN LKRYGLMRVQPEGTDYVAARYVYNDNDEYVHAPVVRWSWLSAIKGYLKIDDLPTAGVIVGFVPDENFEVYLAAYDSFNPR QIVYFDMQGRILQNGKGIAGGGFILYNVPEDIHEVVVVGERTQKIYSRVLPVDPNTLSVLSFRE >Mature_704_residues MQGMRLKRFILPLLVLAGSLYWSSPTGGLKFIPIYEALTIKAQKNSPPHIAFEELLESERQLAEWSRIEKVKPLNLAAEK STAPLFAKRVEIAEMVIQKTPERFVAEAPSTTTVDADPTAWMNDLSPAQAKRLQAAQSRSEVMGQDWSQPTWSDMAKEVL EKSGVMTATTSSNPRVYVAGVDASGKANTKIPQAEVRIPDRNNQPSDDGMNPSYGLVEEQRPAGIRTISGPLEITGGLAV TNEHHIEIRRSDEGVLKELGKVNLVQGQYNIDVEDVTGSIIARLVDKEGKTLGEGSFRLNRVASIAQNRLQGPKIRIEPH PDFGGIVTSAYNPKPDDAAPAKTLVTFVKGAKEVAPKKDGAVAMDNVTKGSTTVMRAAAPSHMQTASIVVSGQEFKTPLY PASMIQALQDILSQQRQMSFEGAPTIIWGKVSLDGKTLSGIDVVVESDPSLVPVYFNQFMLPDPSLKSTGDNGLFAFVNA EPGFHSLLATRAEAIVGYQNVVVEEGSVAQGDIQSTMKNEAVPLRVYDAFAGDAVPATVTMQSLQSEFEVQGATTVTLPN LKRYGLMRVQPEGTDYVAARYVYNDNDEYVHAPVVRWSWLSAIKGYLKIDDLPTAGVIVGFVPDENFEVYLAAYDSFNPR QIVYFDMQGRILQNGKGIAGGGFILYNVPEDIHEVVVVGERTQKIYSRVLPVDPNTLSVLSFRE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 76870; Mature: 76870
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQGMRLKRFILPLLVLAGSLYWSSPTGGLKFIPIYEALTIKAQKNSPPHIAFEELLESER CCCCHHHHHHHHHHHHHCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHH QLAEWSRIEKVKPLNLAAEKSTAPLFAKRVEIAEMVIQKTPERFVAEAPSTTTVDADPTA HHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEECCCCCH WMNDLSPAQAKRLQAAQSRSEVMGQDWSQPTWSDMAKEVLEKSGVMTATTSSNPRVYVAG HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCEEEEEE VDASGKANTKIPQAEVRIPDRNNQPSDDGMNPSYGLVEEQRPAGIRTISGPLEITGGLAV CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCEEE TNEHHIEIRRSDEGVLKELGKVNLVQGQYNIDVEDVTGSIIARLVDKEGKTLGEGSFRLN CCCCEEEEEECCCHHHHHCCCEEEEECEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHH RVASIAQNRLQGPKIRIEPHPDFGGIVTSAYNPKPDDAAPAKTLVTFVKGAKEVAPKKDG HHHHHHHHHCCCCEEEEECCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC AVAMDNVTKGSTTVMRAAAPSHMQTASIVVSGQEFKTPLYPASMIQALQDILSQQRQMSF CEEECCCCCCCCEEEEECCCCCCCEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCC EGAPTIIWGKVSLDGKTLSGIDVVVESDPSLVPVYFNQFMLPDPSLKSTGDNGLFAFVNA CCCCEEEEEEEEECCCEECCEEEEEECCCCEEEEECCCEECCCCCCCCCCCCCEEEEEEC EPGFHSLLATRAEAIVGYQNVVVEEGSVAQGDIQSTMKNEAVPLRVYDAFAGDAVPATVT CCCHHHHHHHHHHHHHCHHHEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCHHHH MQSLQSEFEVQGATTVTLPNLKRYGLMRVQPEGTDYVAARYVYNDNDEYVHAPVVRWSWL HHHHHHHHEECCCEEEECCCCHHCCEEEECCCCCCEEEEEEEECCCCCEEEECHHHHHHH SAIKGYLKIDDLPTAGVIVGFVPDENFEVYLAAYDSFNPRQIVYFDMQGRILQNGKGIAG HHHCCCEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCEEEECCCCEEC GGFILYNVPEDIHEVVVVGERTQKIYSRVLPVDPNTLSVLSFRE CCEEEECCCCCCCCEEEECHHHHHHHHHCCCCCCCCEEEEEECC >Mature Secondary Structure MQGMRLKRFILPLLVLAGSLYWSSPTGGLKFIPIYEALTIKAQKNSPPHIAFEELLESER CCCCHHHHHHHHHHHHHCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHH QLAEWSRIEKVKPLNLAAEKSTAPLFAKRVEIAEMVIQKTPERFVAEAPSTTTVDADPTA HHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEECCCCCH WMNDLSPAQAKRLQAAQSRSEVMGQDWSQPTWSDMAKEVLEKSGVMTATTSSNPRVYVAG HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCEEEEEE VDASGKANTKIPQAEVRIPDRNNQPSDDGMNPSYGLVEEQRPAGIRTISGPLEITGGLAV CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCEEE TNEHHIEIRRSDEGVLKELGKVNLVQGQYNIDVEDVTGSIIARLVDKEGKTLGEGSFRLN CCCCEEEEEECCCHHHHHCCCEEEEECEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHH RVASIAQNRLQGPKIRIEPHPDFGGIVTSAYNPKPDDAAPAKTLVTFVKGAKEVAPKKDG HHHHHHHHHCCCCEEEEECCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC AVAMDNVTKGSTTVMRAAAPSHMQTASIVVSGQEFKTPLYPASMIQALQDILSQQRQMSF CEEECCCCCCCCEEEEECCCCCCCEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCC EGAPTIIWGKVSLDGKTLSGIDVVVESDPSLVPVYFNQFMLPDPSLKSTGDNGLFAFVNA CCCCEEEEEEEEECCCEECCEEEEEECCCCEEEEECCCEECCCCCCCCCCCCCEEEEEEC EPGFHSLLATRAEAIVGYQNVVVEEGSVAQGDIQSTMKNEAVPLRVYDAFAGDAVPATVT CCCHHHHHHHHHHHHHCHHHEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCHHHH MQSLQSEFEVQGATTVTLPNLKRYGLMRVQPEGTDYVAARYVYNDNDEYVHAPVVRWSWL HHHHHHHHEECCCEEEECCCCHHCCEEEECCCCCCEEEEEEEECCCCCEEEECHHHHHHH SAIKGYLKIDDLPTAGVIVGFVPDENFEVYLAAYDSFNPRQIVYFDMQGRILQNGKGIAG HHHCCCEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCEEEECCCCEEC GGFILYNVPEDIHEVVVVGERTQKIYSRVLPVDPNTLSVLSFRE CCEEEECCCCCCCCEEEECHHHHHHHHHCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA