| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42521683
Identifier: 42521683
GI number: 42521683
Start: 31347
End: 32222
Strand: Direct
Name: 42521683
Synonym: Bd0035
Alternate gene names: NA
Gene position: 31347-32222 (Clockwise)
Preceding gene: 42521682
Following gene: 42521689
Centisome position: 0.83
GC content: 49.89
Gene sequence:
>876_bases ATGAAACTGATCAACGTATCTAAAGCATTGGTTCTGACGACGACGGTTCTGGCAGGTTTGGTGGCATGTTCACCGGCTTC TCAAAATGCGGTTAACACTCAAGGCACAAGCATTATCGGCGGTGAGCCGGTAGAGACTTCGGACTCCATCGCAAAGACCA CAGTGGCTATTATCGCTTCTGTACAAACTCACGACGGTCAGGAAGGTTCCTTCATCTGCACGGGCTCCCTGCTTAAAAAC AACATGGTTTTGACGGCTGGTCACTGCGTTCCGGTTGTGGGCGACGAATACAAAGAAGTGGCTATCTATATTATCTTCAA CACTGACATCAACAAGATGGAAAGAACAGATGTTCGCCTGGTGACGGATGCGGTTGTTCATGAAGACTACGGCAAAATGG GCGAGCAAGGTGAAGACGCCAACGACGTGGCTGTATTGAAGTTCGCGGGCAACATGGCTCCGGGCTACAAAGTGGCGAAG TTCCTGTCTGACGAATCCCTGTTGGTTCCAGGCACGAAAGTGACTTTGGCGGGTTACGGTCTGATCGAAACAGATGGCGT TAACACAAAATCTGACGACCGTCTTCGTAAAGTGGACGTCGAGATCGTTGAATCCTTCGGTAAAACTGAAATCCTTTTGG ATCAGTCTCAAGGCAAAGGCGCTTGCCACGGTGACTCCGGTGGTCCGGCGTTCCTGGAAATCAAAGGTCAGCAGTACGTT TGGGGTATCACCAGCCGTGGTGCCGGTAAAGACGGTAAAGATGACTGCTCTCTGGTGAGCGTTTACACGAAAGTGAAATC TCAAGCTGACTTCATCAACGGTGCGATGAAGACTTTGCAAAAAAGAGCAAAACAAACAGCAGTCGCGGCGAAGTAA
Upstream 100 bases:
>100_bases CCATAAGACTTTTTTATGGACCACATTTGAAAAATTGTATTGCACTGGTGCCATTTTGGGTGTTTAACGGCCTCACCTTT TGGGGAAGGTAGGGGGCGAC
Downstream 100 bases:
>100_bases ATCCCGCTATCAGTTTGAAAACAGAAAAGCCACACTGAGACAGTGTGGCTTTTTTCGTTTCAAGGGGGCGAGATGCTTAT GCGCTTTCGGCGCCGTCCTC
Product: trypsin
Products: NA
Alternate protein names: Trypsin; Serine Protease; Secreted Trypsin-Like Serine Protease; Phosphotrypsin; Protease; Tryptase; Trypsin Domain Lipoprotein
Number of amino acids: Translated: 291; Mature: 291
Protein sequence:
>291_residues MKLINVSKALVLTTTVLAGLVACSPASQNAVNTQGTSIIGGEPVETSDSIAKTTVAIIASVQTHDGQEGSFICTGSLLKN NMVLTAGHCVPVVGDEYKEVAIYIIFNTDINKMERTDVRLVTDAVVHEDYGKMGEQGEDANDVAVLKFAGNMAPGYKVAK FLSDESLLVPGTKVTLAGYGLIETDGVNTKSDDRLRKVDVEIVESFGKTEILLDQSQGKGACHGDSGGPAFLEIKGQQYV WGITSRGAGKDGKDDCSLVSVYTKVKSQADFINGAMKTLQKRAKQTAVAAK
Sequences:
>Translated_291_residues MKLINVSKALVLTTTVLAGLVACSPASQNAVNTQGTSIIGGEPVETSDSIAKTTVAIIASVQTHDGQEGSFICTGSLLKN NMVLTAGHCVPVVGDEYKEVAIYIIFNTDINKMERTDVRLVTDAVVHEDYGKMGEQGEDANDVAVLKFAGNMAPGYKVAK FLSDESLLVPGTKVTLAGYGLIETDGVNTKSDDRLRKVDVEIVESFGKTEILLDQSQGKGACHGDSGGPAFLEIKGQQYV WGITSRGAGKDGKDDCSLVSVYTKVKSQADFINGAMKTLQKRAKQTAVAAK >Mature_291_residues MKLINVSKALVLTTTVLAGLVACSPASQNAVNTQGTSIIGGEPVETSDSIAKTTVAIIASVQTHDGQEGSFICTGSLLKN NMVLTAGHCVPVVGDEYKEVAIYIIFNTDINKMERTDVRLVTDAVVHEDYGKMGEQGEDANDVAVLKFAGNMAPGYKVAK FLSDESLLVPGTKVTLAGYGLIETDGVNTKSDDRLRKVDVEIVESFGKTEILLDQSQGKGACHGDSGGPAFLEIKGQQYV WGITSRGAGKDGKDDCSLVSVYTKVKSQADFINGAMKTLQKRAKQTAVAAK
Specific function: Unknown
COG id: COG5640
COG function: function code O; Secreted trypsin-like serine protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI281360622, Length=263, Percent_Identity=27.3764258555133, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI18858067, Length=263, Percent_Identity=27.3764258555133, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24640629, Length=263, Percent_Identity=27.3764258555133, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI281360419, Length=230, Percent_Identity=26.5217391304348, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581698, Length=221, Percent_Identity=30.316742081448, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI281360423, Length=230, Percent_Identity=26.5217391304348, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24656592, Length=264, Percent_Identity=28.7878787878788, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI281360421, Length=230, Percent_Identity=26.5217391304348, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30768; Mature: 30768
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00134 TRYPSIN_HIS ; PS50240 TRYPSIN_DOM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLINVSKALVLTTTVLAGLVACSPASQNAVNTQGTSIIGGEPVETSDSIAKTTVAIIAS CEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHEEHEEE VQTHDGQEGSFICTGSLLKNNMVLTAGHCVPVVGDEYKEVAIYIIFNTDINKMERTDVRL EECCCCCCCCEEEECHHHHCCEEEEECCEEECCCCCCEEEEEEEEECCCCCCHHHCCCEE VTDAVVHEDYGKMGEQGEDANDVAVLKFAGNMAPGYKVAKFLSDESLLVPGTKVTLAGYG HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHCCCCEECCCCEEEEEECC LIETDGVNTKSDDRLRKVDVEIVESFGKTEILLDQSQGKGACHGDSGGPAFLEIKGQQYV EEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCEEE WGITSRGAGKDGKDDCSLVSVYTKVKSQADFINGAMKTLQKRAKQTAVAAK EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKLINVSKALVLTTTVLAGLVACSPASQNAVNTQGTSIIGGEPVETSDSIAKTTVAIIAS CEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHEEHEEE VQTHDGQEGSFICTGSLLKNNMVLTAGHCVPVVGDEYKEVAIYIIFNTDINKMERTDVRL EECCCCCCCCEEEECHHHHCCEEEEECCEEECCCCCCEEEEEEEEECCCCCCHHHCCCEE VTDAVVHEDYGKMGEQGEDANDVAVLKFAGNMAPGYKVAKFLSDESLLVPGTKVTLAGYG HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHCCCCEECCCCEEEEEECC LIETDGVNTKSDDRLRKVDVEIVESFGKTEILLDQSQGKGACHGDSGGPAFLEIKGQQYV EEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCEEE WGITSRGAGKDGKDDCSLVSVYTKVKSQADFINGAMKTLQKRAKQTAVAAK EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA