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The map label for this gene is xerD [C]

Identifier: 38637799

GI number: 38637799

Start: 131433

End: 132671

Strand: Direct

Name: xerD [C]

Synonym: PHG134

Alternate gene names: 38637799

Gene position: 131433-132671 (Clockwise)

Preceding gene: 38637798

Following gene: 38637800

Centisome position: 29.07

GC content: 58.35

Gene sequence:

>1239_bases
ATGAGATACACCATCCATGACCGTGTCGTTCTCGCACACGCACCAGAAGGCCCGCTCGCGTCCCATATCGTCGCCTTTGC
GAACTCGATCGCTGTGCAGGGATACAGTACGCAGTCACTGAAGTACCACGTTAGGCTCGTTGCAGGTTTTAGCCGCTGGC
TTGGCCGAAACGGAATTGACTTGCATAACGTCTGTCCTGATCACAGTGCGCAATACTTACGTTATCGTGCGCGGCACGTG
CGACCGGGTCCGGGAGACCGTGCTGCGCTCAGGCATCTCATTGATTTTCTCGATCGTGAGAGGCTGATTTCGGCGCAGAG
AATGCCTGAGCGTCGGCTGACCCCTATTGAGTCCTGTACACAGGCTTACGTTGAGTATCTGCATGAGGCGCGCGCCCTGT
CCAAAGCAACGATCGTCAATTACGTGCCGTTCATAAGGGAGTTTCTCGAAGATTGCTTTGGTGACGGGCGCATCAGGCTT
TCGCGTTTGCGTGCCGGCGATGTCGTGAACTTTGTGCAATGTCAGGCACTGCGTCTGCATCTGAAGCGCGCGAAGCTCAT
GACTACAGCGCTGCGATCCTTCCTACGTTACGCGTGCTATCGGGGCGACATGACGCTCGATCTGGCCGCCGCTGTTCCCG
TCGTGGCCAACTGGTCGATGCAGTCAATCCCTCGCGGGATTCCACCAGAGCAGATACAGCAACTGCTGGTCAGTATCAAT
CGACGGACTGCCGTTGGTCGTCGTGATTACGCCATCATCCTGCTGCTCGCGCGCCTGGGACTGCGTTCTGGGGAAGTGGC
ATTTCTCGAGCTCGACGATATTGACTGGAACACAGGAGTTTTAAGCGTGCGCGGCAAGAGTGGCCAGCGTAACGGGCTGC
CTTTGCCCGCCGATGTTGGAAAGGCGATTGCAGCATACCTTCGAGACGGGCGACCGCAGAGCACCAGTCGCCGTGTGTTT
TTGCGTGCAAAGGCGCCTGTTATCGGCTTTCGTGGTGCGAGTGGCGTGGGCTCCATCGTTCGGCACTCGCTCCAGCGCGC
CGGCATCGACGCCCCAACCACGGGGGCGCACCAGTTTCGCCATGGACTGGCCTGCCAGATGCTCAGTCACGGCGCGTCAC
TCAGTGAGATTGGTGAGTTGTTGGGACATCATCATCCGCAGACCACGAAGATCTACACGAAGGTCGACATCAAGGCATTG
CGTACCCTGGCCGTACCGTGGCCGGGAGGTGTGCGATGA

Upstream 100 bases:

>100_bases
CGAAAGATAGCTCTCTATTTCATGGGCAAACGGATGCACGGAGATAGAGATAGTCTTGACTCCTTCCTTCAGCCCCAGAG
CATCCGGGAAGGAGTCCATC

Downstream 100 bases:

>100_bases
ACACGCTGCGGCAGGCCGTTCAGGAGTATCTGGACCTCAGGCGGAGCTTGGGCTTCAAGCTTAAAGATGCCGGCAAGGCA
TTGCCTGATTTCGTCGCGTT

Product: putative integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MRYTIHDRVVLAHAPEGPLASHIVAFANSIAVQGYSTQSLKYHVRLVAGFSRWLGRNGIDLHNVCPDHSAQYLRYRARHV
RPGPGDRAALRHLIDFLDRERLISAQRMPERRLTPIESCTQAYVEYLHEARALSKATIVNYVPFIREFLEDCFGDGRIRL
SRLRAGDVVNFVQCQALRLHLKRAKLMTTALRSFLRYACYRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQQLLVSIN
RRTAVGRRDYAIILLLARLGLRSGEVAFLELDDIDWNTGVLSVRGKSGQRNGLPLPADVGKAIAAYLRDGRPQSTSRRVF
LRAKAPVIGFRGASGVGSIVRHSLQRAGIDAPTTGAHQFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKVDIKAL
RTLAVPWPGGVR

Sequences:

>Translated_412_residues
MRYTIHDRVVLAHAPEGPLASHIVAFANSIAVQGYSTQSLKYHVRLVAGFSRWLGRNGIDLHNVCPDHSAQYLRYRARHV
RPGPGDRAALRHLIDFLDRERLISAQRMPERRLTPIESCTQAYVEYLHEARALSKATIVNYVPFIREFLEDCFGDGRIRL
SRLRAGDVVNFVQCQALRLHLKRAKLMTTALRSFLRYACYRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQQLLVSIN
RRTAVGRRDYAIILLLARLGLRSGEVAFLELDDIDWNTGVLSVRGKSGQRNGLPLPADVGKAIAAYLRDGRPQSTSRRVF
LRAKAPVIGFRGASGVGSIVRHSLQRAGIDAPTTGAHQFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKVDIKAL
RTLAVPWPGGVR
>Mature_412_residues
MRYTIHDRVVLAHAPEGPLASHIVAFANSIAVQGYSTQSLKYHVRLVAGFSRWLGRNGIDLHNVCPDHSAQYLRYRARHV
RPGPGDRAALRHLIDFLDRERLISAQRMPERRLTPIESCTQAYVEYLHEARALSKATIVNYVPFIREFLEDCFGDGRIRL
SRLRAGDVVNFVQCQALRLHLKRAKLMTTALRSFLRYACYRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQQLLVSIN
RRTAVGRRDYAIILLLARLGLRSGEVAFLELDDIDWNTGVLSVRGKSGQRNGLPLPADVGKAIAAYLRDGRPQSTSRRVF
LRAKAPVIGFRGASGVGSIVRHSLQRAGIDAPTTGAHQFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKVDIKAL
RTLAVPWPGGVR

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=186, Percent_Identity=31.1827956989247, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45867; Mature: 45867

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYTIHDRVVLAHAPEGPLASHIVAFANSIAVQGYSTQSLKYHVRLVAGFSRWLGRNGID
CCEEEECCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHCCCCCC
LHNVCPDHSAQYLRYRARHVRPGPGDRAALRHLIDFLDRERLISAQRMPERRLTPIESCT
HHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
QAYVEYLHEARALSKATIVNYVPFIREFLEDCFGDGRIRLSRLRAGDVVNFVQCQALRLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHH
LKRAKLMTTALRSFLRYACYRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQQLLVSIN
HHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHH
RRTAVGRRDYAIILLLARLGLRSGEVAFLELDDIDWNTGVLSVRGKSGQRNGLPLPADVG
HHHCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHH
KAIAAYLRDGRPQSTSRRVFLRAKAPVIGFRGASGVGSIVRHSLQRAGIDAPTTGAHQFR
HHHHHHHHCCCCCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHH
HGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKVDIKALRTLAVPWPGGVR
HHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEEHHHHHHHHEECCCCCCCC
>Mature Secondary Structure
MRYTIHDRVVLAHAPEGPLASHIVAFANSIAVQGYSTQSLKYHVRLVAGFSRWLGRNGID
CCEEEECCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHCCCCCC
LHNVCPDHSAQYLRYRARHVRPGPGDRAALRHLIDFLDRERLISAQRMPERRLTPIESCT
HHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
QAYVEYLHEARALSKATIVNYVPFIREFLEDCFGDGRIRLSRLRAGDVVNFVQCQALRLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHH
LKRAKLMTTALRSFLRYACYRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQQLLVSIN
HHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHH
RRTAVGRRDYAIILLLARLGLRSGEVAFLELDDIDWNTGVLSVRGKSGQRNGLPLPADVG
HHHCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHH
KAIAAYLRDGRPQSTSRRVFLRAKAPVIGFRGASGVGSIVRHSLQRAGIDAPTTGAHQFR
HHHHHHHHCCCCCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHH
HGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKVDIKALRTLAVPWPGGVR
HHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEEHHHHHHHHEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]