| Definition | Cupriavidus necator megaplasmid pHG1, complete sequence. |
|---|---|
| Accession | NC_005241 |
| Length | 452,156 |
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The map label for this gene is 38637775
Identifier: 38637775
GI number: 38637775
Start: 104078
End: 106576
Strand: Direct
Name: 38637775
Synonym: PHG110
Alternate gene names: NA
Gene position: 104078-106576 (Clockwise)
Preceding gene: 38637774
Following gene: 38637779
Centisome position: 23.02
GC content: 61.1
Gene sequence:
>2499_bases ATGCCGGTCCCGCCGCAAAATAAGCGTCGCCATTTACTGCCCACGGGCACATCCACTTCTTCTCCATTTACTGCACATGC CGCCAATGGCCGCGGTCGGCCTGTCGTTCCCGACTTGCCACGGCAGCAGCATGGACAAACGCTCCAGGCGCAAATCGAAC GGCTTCAGGCGGTCGCTGTGGCCGCCCATACCGAACAGGCTGCCCTGGGCCTCTCCAGCGGCCTTGGCGTCCAAATCCAG TTTGCAAGCCAGCCCAATGTTGAGCTTGCAGTGCAGAGCCTCAGCGCCGAGCGCGGCAACCCCCGGAGTCACATCGAGCT TCTGAGCGTACGGCAGGACGGCGAGCAGACTTTTGCCAGCGTGTTCGTCCCCGAGGGGAAGCTCGCGCATTTCGAGGGCT ATGTCGCGGATTACCTCGGCGAAAAGAAGAACAAGGCCGGCGGGCCACTCGACCACAAGCCGCTGATCAATACCATTGCC GCCATCCAGCCGATCGAAATCCGCACGCTCTGGACCGACGAGCCCGAGCTCTTGCCAAAAGATCAGGACGAAGGTTTTTG GTGGGAGGCGTGGCTGCCGGTCCGGGGTAACCGAAACGCGGTCATTGGCGATTTCAAGGCGTTGATGCAGCGTGCCGGCT GCCAGGTGCCCGACAAGCAGACCGATTTTCCCGAGCGTACGGTGGTGCTCATGTATGGGAGCCAGAACCAGGTCAAGACC TCGCTGCTCTCCCTGAACTGTGTCGCCGAATTCCGCCGCGCCAAGGAAACGGCCGACTTCTTCGATACGATGGGCGTTGA AGAGCAGCGCGATTGGCAGCAGGATCTAATCCAGCGGACGCATCTCGCTGCCGCCGAGGATGCTCCGCGGCTCTGCCTGC TGGATTCCGGAGTGAACCGCGGTCATGAATTACTGGCTCCCCTAATGGCCGAGGATGACATGTACTCGGTCGAGAAGGAT GGTCGGACCGATGACGAGGCGAATCACGGTACGGGCATGGCGGGCCTCGGTGCATATGGCGATCTCACCGAGGCGATCGA GTCGAACGCGCCCATTGCGATTTACCACCGGCTCGAGTCAGTCAGGCTGCTGAAGGAGGCGGGTGCGAACGCTGGCGAGC CTGAGCTTCATGCGCAGCTCTTTGGTGAGGCCGTCTCCCGCCCGGAAATTTCGTACCCGGACCGCAAACGCATCTTCTGT TCGGCCGTCACGGCATCGGACTACCGAGATCGGGGCCGCCCCTCTTCATGGTCGGCCAAGGTCGATAGTCTGGCCGCAGA TGCCGACAACGAAGGACAGTTTCCGCGGCTTTTTGTACTGTCGGCAGGCAATACGAACGATATCGATGCGTGGAACGCCT ACCCGGACAGCTTGTCGACGAATCTGATCCATGACCCCGGACAAGCCTGGAATGCCTTGACAGTTGGGGCGTGTACCGCC AAGACGACTGCGCATGCAGGCTACGAAGCGATCGCTGAAGAGGGCGGCTTGAGTCCGTATTCGACGACTTCGGCTGCCTG GCAAAGCGCATGGCCATTGAAGCCTGATGTCGTCATGGAGGGTGGCAATGTCGCGCGCGACAATTTTGGTGCCATCGGCA TGGACAGCCTGCAGCTGCTGTCCGCCCACCATCTGCCCCGTGAACGAGTCTTCACCACGTTCAACGCGACCAGTGCCGCA GCAGCCCTGTGCGGAAAGCTCGCCTCGGAAATTGCTGCGGAATATCCTCAGATGCGGCCGGAAACCATTCGCGCCCTGAT CGTGCATTCGGCGGAATGGACGGAAGGAATGCGCAAGGCGTATCTGCCTGCGGCGCAACCCGGCAAGGCGGCCTATGCGC GTTTGATCAGGCATTGCGGATGGGGCGAGCCGTCATTGGACCGCGCGCTCTGGAGCGCGTCCAATTCGCTGACACTCGTT ATTGAGGATGCACTGCGGCCTTATAAAAAGGAGCGCGGTGTCGGTCCCGCTTCGCGGGAGATGAACCTACATGCGCTGCC GTGGCCGCGCGAGGAACTGGAGGCGCTGCAGGGGCTGCCTGTCCAAATGCGGGTTACCCTTTCCTACTTTATCGAGCCCA ATCCGTCAGCGCGCGGAAGCGTTTCAAAGTATCACTACCCGTCCCATCGTCTGCGTTTCGACGTGCAGCGCCCGCTCGAT GCGACGACGGAAGCGTTTGTGGCACGCGTGAACGCTGCCGTCGAGCGTGACGATGAGGATCCTCTAAACGCTGCGGACGC GGACTGGTATCTGGGTGATCGGCAGCGCCATCGCGGCTCCCTCCATCAGGACGTATGGGAAGGCACGGCTGCGGAACTGG CGAGCCGGGGGGTCCTCGCCGTGTATCCTGCACCGGGATGGTGGAGAACCCGCCCGGGACTGGAACGCTTTGACAGCGTG GCCAATTACAGTCTGATTGTTTCCATCAGGACCGAGCAGAATCAGGTCGACCTCTACAACGCAATCGCAAACCAAATCGC AATAGTAAACCAGGTGTGA
Upstream 100 bases:
>100_bases ATGCACGACGAGCCGAAGATATCGACGGAGGCGCTGGAAGCTGCGCTGGTCGAACGGAAGAAGCTGAACCAGAGACTGAA CAATAAGAACTCGCAACCAC
Downstream 100 bases:
>100_bases GAAGACGACGCGACTTTATCGCTGATTGGCTGCTCGTCCGAGTCAGCCATAAAGGCGTTGAGAAGGCCGGCCAGGTGTTG CGGAAGTTTGTCCGCCGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 832; Mature: 831
Protein sequence:
>832_residues MPVPPQNKRRHLLPTGTSTSSPFTAHAANGRGRPVVPDLPRQQHGQTLQAQIERLQAVAVAAHTEQAALGLSSGLGVQIQ FASQPNVELAVQSLSAERGNPRSHIELLSVRQDGEQTFASVFVPEGKLAHFEGYVADYLGEKKNKAGGPLDHKPLINTIA AIQPIEIRTLWTDEPELLPKDQDEGFWWEAWLPVRGNRNAVIGDFKALMQRAGCQVPDKQTDFPERTVVLMYGSQNQVKT SLLSLNCVAEFRRAKETADFFDTMGVEEQRDWQQDLIQRTHLAAAEDAPRLCLLDSGVNRGHELLAPLMAEDDMYSVEKD GRTDDEANHGTGMAGLGAYGDLTEAIESNAPIAIYHRLESVRLLKEAGANAGEPELHAQLFGEAVSRPEISYPDRKRIFC SAVTASDYRDRGRPSSWSAKVDSLAADADNEGQFPRLFVLSAGNTNDIDAWNAYPDSLSTNLIHDPGQAWNALTVGACTA KTTAHAGYEAIAEEGGLSPYSTTSAAWQSAWPLKPDVVMEGGNVARDNFGAIGMDSLQLLSAHHLPRERVFTTFNATSAA AALCGKLASEIAAEYPQMRPETIRALIVHSAEWTEGMRKAYLPAAQPGKAAYARLIRHCGWGEPSLDRALWSASNSLTLV IEDALRPYKKERGVGPASREMNLHALPWPREELEALQGLPVQMRVTLSYFIEPNPSARGSVSKYHYPSHRLRFDVQRPLD ATTEAFVARVNAAVERDDEDPLNAADADWYLGDRQRHRGSLHQDVWEGTAAELASRGVLAVYPAPGWWRTRPGLERFDSV ANYSLIVSIRTEQNQVDLYNAIANQIAIVNQV
Sequences:
>Translated_832_residues MPVPPQNKRRHLLPTGTSTSSPFTAHAANGRGRPVVPDLPRQQHGQTLQAQIERLQAVAVAAHTEQAALGLSSGLGVQIQ FASQPNVELAVQSLSAERGNPRSHIELLSVRQDGEQTFASVFVPEGKLAHFEGYVADYLGEKKNKAGGPLDHKPLINTIA AIQPIEIRTLWTDEPELLPKDQDEGFWWEAWLPVRGNRNAVIGDFKALMQRAGCQVPDKQTDFPERTVVLMYGSQNQVKT SLLSLNCVAEFRRAKETADFFDTMGVEEQRDWQQDLIQRTHLAAAEDAPRLCLLDSGVNRGHELLAPLMAEDDMYSVEKD GRTDDEANHGTGMAGLGAYGDLTEAIESNAPIAIYHRLESVRLLKEAGANAGEPELHAQLFGEAVSRPEISYPDRKRIFC SAVTASDYRDRGRPSSWSAKVDSLAADADNEGQFPRLFVLSAGNTNDIDAWNAYPDSLSTNLIHDPGQAWNALTVGACTA KTTAHAGYEAIAEEGGLSPYSTTSAAWQSAWPLKPDVVMEGGNVARDNFGAIGMDSLQLLSAHHLPRERVFTTFNATSAA AALCGKLASEIAAEYPQMRPETIRALIVHSAEWTEGMRKAYLPAAQPGKAAYARLIRHCGWGEPSLDRALWSASNSLTLV IEDALRPYKKERGVGPASREMNLHALPWPREELEALQGLPVQMRVTLSYFIEPNPSARGSVSKYHYPSHRLRFDVQRPLD ATTEAFVARVNAAVERDDEDPLNAADADWYLGDRQRHRGSLHQDVWEGTAAELASRGVLAVYPAPGWWRTRPGLERFDSV ANYSLIVSIRTEQNQVDLYNAIANQIAIVNQV >Mature_831_residues PVPPQNKRRHLLPTGTSTSSPFTAHAANGRGRPVVPDLPRQQHGQTLQAQIERLQAVAVAAHTEQAALGLSSGLGVQIQF ASQPNVELAVQSLSAERGNPRSHIELLSVRQDGEQTFASVFVPEGKLAHFEGYVADYLGEKKNKAGGPLDHKPLINTIAA IQPIEIRTLWTDEPELLPKDQDEGFWWEAWLPVRGNRNAVIGDFKALMQRAGCQVPDKQTDFPERTVVLMYGSQNQVKTS LLSLNCVAEFRRAKETADFFDTMGVEEQRDWQQDLIQRTHLAAAEDAPRLCLLDSGVNRGHELLAPLMAEDDMYSVEKDG RTDDEANHGTGMAGLGAYGDLTEAIESNAPIAIYHRLESVRLLKEAGANAGEPELHAQLFGEAVSRPEISYPDRKRIFCS AVTASDYRDRGRPSSWSAKVDSLAADADNEGQFPRLFVLSAGNTNDIDAWNAYPDSLSTNLIHDPGQAWNALTVGACTAK TTAHAGYEAIAEEGGLSPYSTTSAAWQSAWPLKPDVVMEGGNVARDNFGAIGMDSLQLLSAHHLPRERVFTTFNATSAAA ALCGKLASEIAAEYPQMRPETIRALIVHSAEWTEGMRKAYLPAAQPGKAAYARLIRHCGWGEPSLDRALWSASNSLTLVI EDALRPYKKERGVGPASREMNLHALPWPREELEALQGLPVQMRVTLSYFIEPNPSARGSVSKYHYPSHRLRFDVQRPLDA TTEAFVARVNAAVERDDEDPLNAADADWYLGDRQRHRGSLHQDVWEGTAAELASRGVLAVYPAPGWWRTRPGLERFDSVA NYSLIVSIRTEQNQVDLYNAIANQIAIVNQV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000209 - InterPro: IPR015500 [H]
Pfam domain/function: PF00082 Peptidase_S8 [H]
EC number: NA
Molecular weight: Translated: 91452; Mature: 91321
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVPPQNKRRHLLPTGTSTSSPFTAHAANGRGRPVVPDLPRQQHGQTLQAQIERLQAVAV CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH AAHTEQAALGLSSGLGVQIQFASQPNVELAVQSLSAERGNPRSHIELLSVRQDGEQTFAS HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHEEEEEHHHCCHHHHHH VFVPEGKLAHFEGYVADYLGEKKNKAGGPLDHKPLINTIAAIQPIEIRTLWTDEPELLPK EECCCCCEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCC DQDEGFWWEAWLPVRGNRNAVIGDFKALMQRAGCQVPDKQTDFPERTVVLMYGSQNQVKT CCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHH SLLSLNCVAEFRRAKETADFFDTMGVEEQRDWQQDLIQRTHLAAAEDAPRLCLLDSGVNR HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC GHELLAPLMAEDDMYSVEKDGRTDDEANHGTGMAGLGAYGDLTEAIESNAPIAIYHRLES CHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEHHHHH VRLLKEAGANAGEPELHAQLFGEAVSRPEISYPDRKRIFCSAVTASDYRDRGRPSSWSAK HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHCCCCCCCCHH VDSLAADADNEGQFPRLFVLSAGNTNDIDAWNAYPDSLSTNLIHDPGQAWNALTVGACTA HHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC KTTAHAGYEAIAEEGGLSPYSTTSAAWQSAWPLKPDVVMEGGNVARDNFGAIGMDSLQLL CHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHH SAHHLPRERVFTTFNATSAAAALCGKLASEIAAEYPQMRPETIRALIVHSAEWTEGMRKA HHHCCCHHHEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHH YLPAAQPGKAAYARLIRHCGWGEPSLDRALWSASNSLTLVIEDALRPYKKERGVGPASRE CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCCC MNLHALPWPREELEALQGLPVQMRVTLSYFIEPNPSARGSVSKYHYPSHRLRFDVQRPLD CCEEECCCCHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCC ATTEAFVARVNAAVERDDEDPLNAADADWYLGDRQRHRGSLHQDVWEGTAAELASRGVLA HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHCCHHHHHHHCCEEE VYPAPGWWRTRPGLERFDSVANYSLIVSIRTEQNQVDLYNAIANQIAIVNQV EECCCCCCCCCCCHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHEEEECCC >Mature Secondary Structure PVPPQNKRRHLLPTGTSTSSPFTAHAANGRGRPVVPDLPRQQHGQTLQAQIERLQAVAV CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH AAHTEQAALGLSSGLGVQIQFASQPNVELAVQSLSAERGNPRSHIELLSVRQDGEQTFAS HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHEEEEEHHHCCHHHHHH VFVPEGKLAHFEGYVADYLGEKKNKAGGPLDHKPLINTIAAIQPIEIRTLWTDEPELLPK EECCCCCEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCC DQDEGFWWEAWLPVRGNRNAVIGDFKALMQRAGCQVPDKQTDFPERTVVLMYGSQNQVKT CCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHH SLLSLNCVAEFRRAKETADFFDTMGVEEQRDWQQDLIQRTHLAAAEDAPRLCLLDSGVNR HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC GHELLAPLMAEDDMYSVEKDGRTDDEANHGTGMAGLGAYGDLTEAIESNAPIAIYHRLES CHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEHHHHH VRLLKEAGANAGEPELHAQLFGEAVSRPEISYPDRKRIFCSAVTASDYRDRGRPSSWSAK HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHCCCCCCCCHH VDSLAADADNEGQFPRLFVLSAGNTNDIDAWNAYPDSLSTNLIHDPGQAWNALTVGACTA HHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC KTTAHAGYEAIAEEGGLSPYSTTSAAWQSAWPLKPDVVMEGGNVARDNFGAIGMDSLQLL CHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHH SAHHLPRERVFTTFNATSAAAALCGKLASEIAAEYPQMRPETIRALIVHSAEWTEGMRKA HHHCCCHHHEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHH YLPAAQPGKAAYARLIRHCGWGEPSLDRALWSASNSLTLVIEDALRPYKKERGVGPASRE CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCCC MNLHALPWPREELEALQGLPVQMRVTLSYFIEPNPSARGSVSKYHYPSHRLRFDVQRPLD CCEEECCCCHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCC ATTEAFVARVNAAVERDDEDPLNAADADWYLGDRQRHRGSLHQDVWEGTAAELASRGVLA HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHCCHHHHHHHCCEEE VYPAPGWWRTRPGLERFDSVANYSLIVSIRTEQNQVDLYNAIANQIAIVNQV EECCCCCCCCCCCHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]