Click here to switch to the map view.

The map label for this gene is xerD [C]

Identifier: 38637722

GI number: 38637722

Start: 52731

End: 53714

Strand: Direct

Name: xerD [C]

Synonym: PHG057

Alternate gene names: 38637722

Gene position: 52731-53714 (Clockwise)

Preceding gene: 38637721

Following gene: 38637723

Centisome position: 11.66

GC content: 61.08

Gene sequence:

>984_bases
ATGTCTAGTAGCAAATTCAAGGGGCATTTCCAGAGCGCTGTCGGCCCACTCATGGAACAGTTCGTCCAGGAGAAACAGGC
CTGTGGGTACCGATATAATGCGCAAGCCCGCTTGCTGGCATGCTTTGACCGCTTCCTGAGCGATGAAGCGCTATCGGCAT
GCGAGCTACCGCGCTCAATCAGCCGAAAGTGGACCGCCAAGCGGCCCCACGAGAGCAAGAGCACCCACGATCAGCGTATC
GGCGCAGTTCGCCAATTTGCCCTGTTCATGTGCCGGCTGGGGTATGCCGCTGATGTGCCGGATCGGTCCCTGACGGCAAG
GCGTACGAGCAGCTTCTCTCCGCGCATCCTGACCCACGCTGAGATTCAGCGGCTGTTCCGCGCGGCTGACCAGCTCACGC
CGACCGCACTTTCGCCAATGCGGCATCTCGTTATGCCGGAAGTATTGCGACTACTGTATGGCTGCGGCCTGAGGGTGGGC
GAGGTGCTTCACCTGCGCGTGGCCGATGTGGACCTCGAACGGGGAATCCTGACGGTGCGTGATGGCAAATTTCGAAAGGA
CAGGCTCGTGCCACCAGCCTTGCCCCTGGTACAGCGCCTTCGAGTCTACGCACAAGTCATGGGCGATCGCCCGTCCGATG
CCTACTTCTTCCCTTCGCCATCAGACGGCCCGTTGAGCCACTCGTCCATCTACTGGCTGTACCGGGAGCTGCTGTTGCGC
TCTGGGATCCCGCACGCCGGTAGAGGCAAGGGTCCGCGCGTACATGATCTACGCCACGCGTATGCCGTGCATGCGTTGCT
TCGGTGGTGCCAGGATGGAGCTGACCTCGATGCGAAGCTCCCGGTACTGGCGACCTACATGGGACATCAGTCCCTAGCCG
GAACGCAGCGCTACCTGCATCTGATTGCCGAACTGTTTCCGGAGATCACGGCACGTACCGGCGCCGCCTTTGGTGATGTC
ATCCCGCGGAGGAACGGATCATGA

Upstream 100 bases:

>100_bases
GACATCCTGGGGCATGCGACGACAGCCTCGACGTTGATCTACGCGAAGACCGACGTGGAAACCCTGCGCACTGCCGCGTT
GAACACCGAGAAGATGCGCC

Downstream 100 bases:

>100_bases
AACCGACGGATTTCTCCATGCTCGTGACCAGCTTCCTGACGCACCATCTGGCCGCACAGCGCAACCTGAGCCCCAACACG
ATCAAGGCCTATCGCGACGT

Product: putative integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MSSSKFKGHFQSAVGPLMEQFVQEKQACGYRYNAQARLLACFDRFLSDEALSACELPRSISRKWTAKRPHESKSTHDQRI
GAVRQFALFMCRLGYAADVPDRSLTARRTSSFSPRILTHAEIQRLFRAADQLTPTALSPMRHLVMPEVLRLLYGCGLRVG
EVLHLRVADVDLERGILTVRDGKFRKDRLVPPALPLVQRLRVYAQVMGDRPSDAYFFPSPSDGPLSHSSIYWLYRELLLR
SGIPHAGRGKGPRVHDLRHAYAVHALLRWCQDGADLDAKLPVLATYMGHQSLAGTQRYLHLIAELFPEITARTGAAFGDV
IPRRNGS

Sequences:

>Translated_327_residues
MSSSKFKGHFQSAVGPLMEQFVQEKQACGYRYNAQARLLACFDRFLSDEALSACELPRSISRKWTAKRPHESKSTHDQRI
GAVRQFALFMCRLGYAADVPDRSLTARRTSSFSPRILTHAEIQRLFRAADQLTPTALSPMRHLVMPEVLRLLYGCGLRVG
EVLHLRVADVDLERGILTVRDGKFRKDRLVPPALPLVQRLRVYAQVMGDRPSDAYFFPSPSDGPLSHSSIYWLYRELLLR
SGIPHAGRGKGPRVHDLRHAYAVHALLRWCQDGADLDAKLPVLATYMGHQSLAGTQRYLHLIAELFPEITARTGAAFGDV
IPRRNGS
>Mature_326_residues
SSSKFKGHFQSAVGPLMEQFVQEKQACGYRYNAQARLLACFDRFLSDEALSACELPRSISRKWTAKRPHESKSTHDQRIG
AVRQFALFMCRLGYAADVPDRSLTARRTSSFSPRILTHAEIQRLFRAADQLTPTALSPMRHLVMPEVLRLLYGCGLRVGE
VLHLRVADVDLERGILTVRDGKFRKDRLVPPALPLVQRLRVYAQVMGDRPSDAYFFPSPSDGPLSHSSIYWLYRELLLRS
GIPHAGRGKGPRVHDLRHAYAVHALLRWCQDGADLDAKLPVLATYMGHQSLAGTQRYLHLIAELFPEITARTGAAFGDVI
PRRNGS

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=299, Percent_Identity=28.4280936454849, Blast_Score=75, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36801; Mature: 36670

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSKFKGHFQSAVGPLMEQFVQEKQACGYRYNAQARLLACFDRFLSDEALSACELPRSI
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
SRKWTAKRPHESKSTHDQRIGAVRQFALFMCRLGYAADVPDRSLTARRTSSFSPRILTHA
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHH
EIQRLFRAADQLTPTALSPMRHLVMPEVLRLLYGCGLRVGEVLHLRVADVDLERGILTVR
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEHHHCCEEEEC
DGKFRKDRLVPPALPLVQRLRVYAQVMGDRPSDAYFFPSPSDGPLSHSSIYWLYRELLLR
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHH
SGIPHAGRGKGPRVHDLRHAYAVHALLRWCQDGADLDAKLPVLATYMGHQSLAGTQRYLH
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LIAELFPEITARTGAAFGDVIPRRNGS
HHHHHHHHHHHHHCCHHHHHCCCCCCC
>Mature Secondary Structure 
SSSKFKGHFQSAVGPLMEQFVQEKQACGYRYNAQARLLACFDRFLSDEALSACELPRSI
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
SRKWTAKRPHESKSTHDQRIGAVRQFALFMCRLGYAADVPDRSLTARRTSSFSPRILTHA
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHH
EIQRLFRAADQLTPTALSPMRHLVMPEVLRLLYGCGLRVGEVLHLRVADVDLERGILTVR
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEHHHCCEEEEC
DGKFRKDRLVPPALPLVQRLRVYAQVMGDRPSDAYFFPSPSDGPLSHSSIYWLYRELLLR
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHH
SGIPHAGRGKGPRVHDLRHAYAVHALLRWCQDGADLDAKLPVLATYMGHQSLAGTQRYLH
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LIAELFPEITARTGAAFGDVIPRRNGS
HHHHHHHHHHHHHCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]