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The map label for this gene is xerD [C]

Identifier: 38637721

GI number: 38637721

Start: 51476

End: 52738

Strand: Direct

Name: xerD [C]

Synonym: PHG056

Alternate gene names: 38637721

Gene position: 51476-52738 (Clockwise)

Preceding gene: 38637715

Following gene: 38637722

Centisome position: 11.38

GC content: 55.9

Gene sequence:

>1263_bases
ATGGAGAAGTCAACCCGTCAAGTTTCAAGCCACCTGCCGTTGCAGCAGTTCGTCGCTGGCGCCGTGAGCGAGCTGGAGAG
GCTAGGCTACAGCAGGAAATCGCTTTGGCGCTATCGCGTCGCCTGGCGTCATCTCATTGAGTTTTGTCATGAGATGAGCC
TGGGCGATAAGTACTCCCTGGAGCTGGCGAAACGGTTTTGCTCTACGTATCAAGTTCGTGCTGACGAATGCCTGAACTCT
GGCCAGGGGTGGCGGCGGAATATCGTGTTTGCCCTCAAGGTTCTCGATGGCTTTGCGCATGAGGGGCATATTGTGCGCAC
CGTCACCGATATCAAGACGATACAAGTTCCCGAACCCATGAGCACGGCATTGCGCGACTATGAACTGTACTGCCGGGATC
GCCGTCATCTTCGTACAACGACCCTTCGCGCGCGGATGCGGGTGATAGCGTTATTCGCGGATTTCCTTGGTTCAAGGAAC
ATCACGTTTTTTGATCAGGTGCAGCCGGCCGATCTCTGCGCATTTGTGACCGCGCAACATCGTCTGTCGGCGAAGTCAGT
CTCGCGCATCGTTTCCGATGTGCGTTGCTTTCTGCGCTTTCTTCTCATGCGAGGAATTCTGCAGCAGGATCTCAGCCATG
TATTGCCGGTGGTCCACGTTCCACGCGATGCGACTATTCCATCGGTCTGGGACCCGGAAGTCCTGACCAAGCTGCTCGAA
GCCGTTGATAGAACCTCACCCAAAGGCAAGCGCGATTACGCCATCTTTCTGCTTGCCTGTCGCCTCGGATTGAGAGTGGG
CGATATTCGCGCACTCTCCCTCGACGATCTGAAGTGGGAAACGGCCACAATAGAGGTTAGGCAGTCGAAGACCCTCACAC
CTCTTTGTTTGCCATTGACGGAGGAAGTTGGCGAAGCGCTGATTGACTATCTGAGATCGGGCCGTCCTCAATCGGATCAT
CGAGAAGTGTTCCTCACGTTGAACGCTCCCTTCCTACCCTTCCGCGAGGCCGACAGCCTATATTGGATCGTCCGTCATTG
GAAGGCCATCGCGGGGATTCACTTCAGGACTCCACAACGCCATGGTTTGCACTCTCTACGCCACACACTCGCGACACGAT
TGCTCCATGAACAGACGCCGTTTCAAGTCATCAGCGACATCCTGGGGCATGCGACGACAGCCTCGACGTTGATCTACGCG
AAGACCGACGTGGAAACCCTGCGCACTGCCGCGTTGAACACCGAGAAGATGCGCCATGTCTAG

Upstream 100 bases:

>100_bases
ACGCTTCGTGAAGCAAGGCGTCTTGTTTGAACTACTGCACATAAAGTTTCATGATGGGCTCCTGGCGGCCATCGGGATCG
CCTTTGTGAGGAGTTCGATC

Downstream 100 bases:

>100_bases
TAGCAAATTCAAGGGGCATTTCCAGAGCGCTGTCGGCCCACTCATGGAACAGTTCGTCCAGGAGAAACAGGCCTGTGGGT
ACCGATATAATGCGCAAGCC

Product: putative integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MEKSTRQVSSHLPLQQFVAGAVSELERLGYSRKSLWRYRVAWRHLIEFCHEMSLGDKYSLELAKRFCSTYQVRADECLNS
GQGWRRNIVFALKVLDGFAHEGHIVRTVTDIKTIQVPEPMSTALRDYELYCRDRRHLRTTTLRARMRVIALFADFLGSRN
ITFFDQVQPADLCAFVTAQHRLSAKSVSRIVSDVRCFLRFLLMRGILQQDLSHVLPVVHVPRDATIPSVWDPEVLTKLLE
AVDRTSPKGKRDYAIFLLACRLGLRVGDIRALSLDDLKWETATIEVRQSKTLTPLCLPLTEEVGEALIDYLRSGRPQSDH
REVFLTLNAPFLPFREADSLYWIVRHWKAIAGIHFRTPQRHGLHSLRHTLATRLLHEQTPFQVISDILGHATTASTLIYA
KTDVETLRTAALNTEKMRHV

Sequences:

>Translated_420_residues
MEKSTRQVSSHLPLQQFVAGAVSELERLGYSRKSLWRYRVAWRHLIEFCHEMSLGDKYSLELAKRFCSTYQVRADECLNS
GQGWRRNIVFALKVLDGFAHEGHIVRTVTDIKTIQVPEPMSTALRDYELYCRDRRHLRTTTLRARMRVIALFADFLGSRN
ITFFDQVQPADLCAFVTAQHRLSAKSVSRIVSDVRCFLRFLLMRGILQQDLSHVLPVVHVPRDATIPSVWDPEVLTKLLE
AVDRTSPKGKRDYAIFLLACRLGLRVGDIRALSLDDLKWETATIEVRQSKTLTPLCLPLTEEVGEALIDYLRSGRPQSDH
REVFLTLNAPFLPFREADSLYWIVRHWKAIAGIHFRTPQRHGLHSLRHTLATRLLHEQTPFQVISDILGHATTASTLIYA
KTDVETLRTAALNTEKMRHV
>Mature_420_residues
MEKSTRQVSSHLPLQQFVAGAVSELERLGYSRKSLWRYRVAWRHLIEFCHEMSLGDKYSLELAKRFCSTYQVRADECLNS
GQGWRRNIVFALKVLDGFAHEGHIVRTVTDIKTIQVPEPMSTALRDYELYCRDRRHLRTTTLRARMRVIALFADFLGSRN
ITFFDQVQPADLCAFVTAQHRLSAKSVSRIVSDVRCFLRFLLMRGILQQDLSHVLPVVHVPRDATIPSVWDPEVLTKLLE
AVDRTSPKGKRDYAIFLLACRLGLRVGDIRALSLDDLKWETATIEVRQSKTLTPLCLPLTEEVGEALIDYLRSGRPQSDH
REVFLTLNAPFLPFREADSLYWIVRHWKAIAGIHFRTPQRHGLHSLRHTLATRLLHEQTPFQVISDILGHATTASTLIYA
KTDVETLRTAALNTEKMRHV

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=285, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 48274; Mature: 48274

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKSTRQVSSHLPLQQFVAGAVSELERLGYSRKSLWRYRVAWRHLIEFCHEMSLGDKYSL
CCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ELAKRFCSTYQVRADECLNSGQGWRRNIVFALKVLDGFAHEGHIVRTVTDIKTIQVPEPM
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEECCCHH
STALRDYELYCRDRRHLRTTTLRARMRVIALFADFLGSRNITFFDQVQPADLCAFVTAQH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHH
RLSAKSVSRIVSDVRCFLRFLLMRGILQQDLSHVLPVVHVPRDATIPSVWDPEVLTKLLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHHHH
AVDRTSPKGKRDYAIFLLACRLGLRVGDIRALSLDDLKWETATIEVRQSKTLTPLCLPLT
HHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCEEHHHH
EEVGEALIDYLRSGRPQSDHREVFLTLNAPFLPFREADSLYWIVRHWKAIAGIHFRTPQR
HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCEECCCCH
HGLHSLRHTLATRLLHEQTPFQVISDILGHATTASTLIYAKTDVETLRTAALNTEKMRHV
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHEEEEEECCHHHHHHHHCCHHHHCCC
>Mature Secondary Structure
MEKSTRQVSSHLPLQQFVAGAVSELERLGYSRKSLWRYRVAWRHLIEFCHEMSLGDKYSL
CCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ELAKRFCSTYQVRADECLNSGQGWRRNIVFALKVLDGFAHEGHIVRTVTDIKTIQVPEPM
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEECCCHH
STALRDYELYCRDRRHLRTTTLRARMRVIALFADFLGSRNITFFDQVQPADLCAFVTAQH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHH
RLSAKSVSRIVSDVRCFLRFLLMRGILQQDLSHVLPVVHVPRDATIPSVWDPEVLTKLLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHHHH
AVDRTSPKGKRDYAIFLLACRLGLRVGDIRALSLDDLKWETATIEVRQSKTLTPLCLPLT
HHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCEEHHHH
EEVGEALIDYLRSGRPQSDHREVFLTLNAPFLPFREADSLYWIVRHWKAIAGIHFRTPQR
HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCEECCCCH
HGLHSLRHTLATRLLHEQTPFQVISDILGHATTASTLIYAKTDVETLRTAALNTEKMRHV
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHEEEEEECCHHHHHHHHCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]