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The map label for this gene is tnpA [H]

Identifier: 38637708

GI number: 38637708

Start: 39414

End: 40640

Strand: Direct

Name: tnpA [H]

Synonym: PHG043

Alternate gene names: 38637708

Gene position: 39414-40640 (Clockwise)

Preceding gene: 38637703

Following gene: 38637715

Centisome position: 8.72

GC content: 60.39

Gene sequence:

>1227_bases
ATGCATAGCAAACTGTTTGAAGCAGCCCTTGGCATAAGCGATCCGTGGTTCGTCCGGGAAGTCGACTTCAACGCGCAAAC
CAAGACGTTGACGATCCAGATTGACTTTGTCGCCGGCAGCCGCTTTTCCCACCCGGAGGTCGCCGGTGGGCACCCGGTTC
ACGACACGGTGACCAAACGCTATCGGCACCTGAACTTCTTCGAGCACGACTGCTATCTGGAAGTCCGCACGCCACGCGTG
AAGCTTCCCGACGGCCGCGTGGTGTTGGTCGAGCCGGACTGGGCTGGCAAGCTCTCTGGCTTCACGTTGCTGTTTGAAGC
CATGGTGGTGGCGCTTGCGCAGCAGATGCCGTTTTCTGCTGTAGCCAGAACGGTGGGTGAGTCGTGGCATCGCGTGTACG
CTATCTGCGAGCGCTATGTCGACCTCGCGGTGGCCGAACTCGATCTGGCCGGCGTGACCGCTGCCGCCGTTGACGAAACG
TCCTACAGGCGCGGTCACAACTACCTGACGCTTGTCGCTGATGCCGACGCGCGTAAGGTCGTGTTTGTGACCGAAGGCAA
GGATGCTGCCACGGTTGGCAAGTTCGCTGCACATCTGCGCGAGAACAACGCTGCGCCTGAGCAGATCGGGGTGGTCAGTA
TCGACATGTCGCCGGCGTTCATCAAGGGCGTCAGCGAGCATTTGCCCAACGCGCGCATCACCTTCGACAAGTTCCATGTC
GTGGCTCACGCTTCTGCAGCCGTGGACAAGACCCGGCGTATCGAACAGAAGACCGATCCAAGCCTCAAAGGCCTGCGCTG
GACGCTGCTCAAGGATCGCGACGGGTTGCCAGCCGCGCAGCGTGCCGATCTCGACGCGTTGATCGCCAACGTCACGACCA
AACGCACTGCCCGTGCCTGGCTGTATCGCGAGCAGTTGCGCGAAATCCTTGAGCGCAAGCAGATCAACGTTGTTTCCGCA
ATGCTCGAGCAGTGGTGCACGAACGTCATGCGATCCAAGGTCGAGCCAATGAAGGAGGTCGCGCGCATGATCCGCAAGCA
TTTCGACGGTATCGTTGCATGGACCCAGACGCGCCAGACCAATGGCTTCCTGGAGGCGCTCAACGGCCTGTTCCAAGCCG
CCAAGCGCAAGGCCCGCGGTTATGTGAGCTTCAAAACCATGCGCACCGTGATCTTCCTGATCGCCGGAAAGCTCGACTTC
TCCGCGATCAACCCGCATGCCGCATAA

Upstream 100 bases:

>100_bases
CTATCTCCGTGCATCCGTTTGCCCATGAAATAGAGAGGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCA
GGTAAAGAGCAACAAGAGCG

Downstream 100 bases:

>100_bases
CCCACTCATTTTTCAAAAGAGCCATAGAGAGCTATCTTTCGATTACAAGACATAGTCGGGAAGGGCATATAGTGCCTCAG
CACGTGCGGCGTCACTCGTT

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MHSKLFEAALGISDPWFVREVDFNAQTKTLTIQIDFVAGSRFSHPEVAGGHPVHDTVTKRYRHLNFFEHDCYLEVRTPRV
KLPDGRVVLVEPDWAGKLSGFTLLFEAMVVALAQQMPFSAVARTVGESWHRVYAICERYVDLAVAELDLAGVTAAAVDET
SYRRGHNYLTLVADADARKVVFVTEGKDAATVGKFAAHLRENNAAPEQIGVVSIDMSPAFIKGVSEHLPNARITFDKFHV
VAHASAAVDKTRRIEQKTDPSLKGLRWTLLKDRDGLPAAQRADLDALIANVTTKRTARAWLYREQLREILERKQINVVSA
MLEQWCTNVMRSKVEPMKEVARMIRKHFDGIVAWTQTRQTNGFLEALNGLFQAAKRKARGYVSFKTMRTVIFLIAGKLDF
SAINPHAA

Sequences:

>Translated_408_residues
MHSKLFEAALGISDPWFVREVDFNAQTKTLTIQIDFVAGSRFSHPEVAGGHPVHDTVTKRYRHLNFFEHDCYLEVRTPRV
KLPDGRVVLVEPDWAGKLSGFTLLFEAMVVALAQQMPFSAVARTVGESWHRVYAICERYVDLAVAELDLAGVTAAAVDET
SYRRGHNYLTLVADADARKVVFVTEGKDAATVGKFAAHLRENNAAPEQIGVVSIDMSPAFIKGVSEHLPNARITFDKFHV
VAHASAAVDKTRRIEQKTDPSLKGLRWTLLKDRDGLPAAQRADLDALIANVTTKRTARAWLYREQLREILERKQINVVSA
MLEQWCTNVMRSKVEPMKEVARMIRKHFDGIVAWTQTRQTNGFLEALNGLFQAAKRKARGYVSFKTMRTVIFLIAGKLDF
SAINPHAA
>Mature_408_residues
MHSKLFEAALGISDPWFVREVDFNAQTKTLTIQIDFVAGSRFSHPEVAGGHPVHDTVTKRYRHLNFFEHDCYLEVRTPRV
KLPDGRVVLVEPDWAGKLSGFTLLFEAMVVALAQQMPFSAVARTVGESWHRVYAICERYVDLAVAELDLAGVTAAAVDET
SYRRGHNYLTLVADADARKVVFVTEGKDAATVGKFAAHLRENNAAPEQIGVVSIDMSPAFIKGVSEHLPNARITFDKFHV
VAHASAAVDKTRRIEQKTDPSLKGLRWTLLKDRDGLPAAQRADLDALIANVTTKRTARAWLYREQLREILERKQINVVSA
MLEQWCTNVMRSKVEPMKEVARMIRKHFDGIVAWTQTRQTNGFLEALNGLFQAAKRKARGYVSFKTMRTVIFLIAGKLDF
SAINPHAA

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3464

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 12 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002560 [H]

Pfam domain/function: PF01610 Transposase_12 [H]

EC number: NA

Molecular weight: Translated: 45754; Mature: 45754

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSKLFEAALGISDPWFVREVDFNAQTKTLTIQIDFVAGSRFSHPEVAGGHPVHDTVTKR
CCCHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHH
YRHLNFFEHDCYLEVRTPRVKLPDGRVVLVEPDWAGKLSGFTLLFEAMVVALAQQMPFSA
HHHCCCCCCCEEEEEECCEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHH
VARTVGESWHRVYAICERYVDLAVAELDLAGVTAAAVDETSYRRGHNYLTLVADADARKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHCCCCEEEEEEECCCCEE
VFVTEGKDAATVGKFAAHLRENNAAPEQIGVVSIDMSPAFIKGVSEHLPNARITFDKFHV
EEEECCCCHHHHHHHHHHHHHCCCCCHHEEEEEEECCHHHHHHHHHHCCCCEEEHHHHHE
VAHASAAVDKTRRIEQKTDPSLKGLRWTLLKDRDGLPAAQRADLDALIANVTTKRTARAW
EHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHH
LYREQLREILERKQINVVSAMLEQWCTNVMRSKVEPMKEVARMIRKHFDGIVAWTQTRQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
NGFLEALNGLFQAAKRKARGYVSFKTMRTVIFLIAGKLDFSAINPHAA
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MHSKLFEAALGISDPWFVREVDFNAQTKTLTIQIDFVAGSRFSHPEVAGGHPVHDTVTKR
CCCHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHH
YRHLNFFEHDCYLEVRTPRVKLPDGRVVLVEPDWAGKLSGFTLLFEAMVVALAQQMPFSA
HHHCCCCCCCEEEEEECCEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHH
VARTVGESWHRVYAICERYVDLAVAELDLAGVTAAAVDETSYRRGHNYLTLVADADARKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHCCCCEEEEEEECCCCEE
VFVTEGKDAATVGKFAAHLRENNAAPEQIGVVSIDMSPAFIKGVSEHLPNARITFDKFHV
EEEECCCCHHHHHHHHHHHHHCCCCCHHEEEEEEECCHHHHHHHHHHCCCCEEEHHHHHE
VAHASAAVDKTRRIEQKTDPSLKGLRWTLLKDRDGLPAAQRADLDALIANVTTKRTARAW
EHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHH
LYREQLREILERKQINVVSAMLEQWCTNVMRSKVEPMKEVARMIRKHFDGIVAWTQTRQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
NGFLEALNGLFQAAKRKARGYVSFKTMRTVIFLIAGKLDFSAINPHAA
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8093238 [H]