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The map label for this gene is hoxZ

Identifier: 38637671

GI number: 38637671

Start: 3158

End: 3892

Strand: Direct

Name: hoxZ

Synonym: PHG003

Alternate gene names: 38637671

Gene position: 3158-3892 (Clockwise)

Preceding gene: 38637670

Following gene: 38637672

Centisome position: 0.7

GC content: 57.14

Gene sequence:

>735_bases
ATGAGCACAAAAATGCAGGCGGATCGCATTGCAGATGCGACCGGGACCGACGAAGGAGCGGTAGCCAGCGGGAAGTCAAT
CAAGGCCACTTATGTTTATGAGGCGCCAGTGAGGCTGTGGCACTGGGTCAATGCGCTGGCGATCGTAGTGCTGGCAGTGA
CCGGATTTTTTATCGGCTCGCCGCCCGCGACCAGGCCGGGGGAGGCCAGCGCAAACTTTCTGATGGGCTATATTCGCTTT
GCCCACTTTGTCGCAGCTTACATATTCGCGATCGGCATGCTGGGCCGCATCTACTGGGCGACGGCAGGGAATCATCATTC
CCGCGAACTCTTCTCCGTGCCGGTGTTCACTCGGGCGTACTGGCAGGAGGTGATTTCGATGCTGCGTTGGTACGCCTTCC
TATCTGCGCGTCCAAGCCGGTATGTCGGTCACAATCCGCTGGCCCGTTTCGCGATGTTCTTCATCTTCTTCCTGAGTTCG
GTGTTCATGATCCTCACGGGCTTCGCGATGTACGGCGAAGGCGCACAGATGGGCTCGTGGCAGGAGCGCATGTTCGGCTG
GGTCATTCCTTTGCTCGGTCAATCTCAGGATGTGCATACCTGGCATCATTTGGGTATGTGGTTCATTGTGGTGTTTGTGA
TCGTCCATGTCTATGCAGCGATTCGCGAGGACATCATGGGCCGCCAGAGCGTAGTGAGCACGATGGTCTCGGGCTATCGG
ACCTTTAAGGACTGA

Upstream 100 bases:

>100_bases
AAGGCCAGGAACTCACTACAGTCAAGGTGCGATAAAAGGTGCCGGACCGGCGTCTGGCCAGCGAGCGGATATCGGTTCGG
CAACGGCACAAGGAGATAGC

Downstream 100 bases:

>100_bases
TGCGCAATGCAACCGAAGCGATCGCAGGCTTTCGTCGATACCATGCACCCGCTACCGGAGGTATTGCCCTCGGTATGGTG
GCATCCCGGCGTGTCACGGC

Product: membrane-bound hydrogenase-linked b-type cytochrome

Products: oxidized ferredoxin; H2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MSTKMQADRIADATGTDEGAVASGKSIKATYVYEAPVRLWHWVNALAIVVLAVTGFFIGSPPATRPGEASANFLMGYIRF
AHFVAAYIFAIGMLGRIYWATAGNHHSRELFSVPVFTRAYWQEVISMLRWYAFLSARPSRYVGHNPLARFAMFFIFFLSS
VFMILTGFAMYGEGAQMGSWQERMFGWVIPLLGQSQDVHTWHHLGMWFIVVFVIVHVYAAIREDIMGRQSVVSTMVSGYR
TFKD

Sequences:

>Translated_244_residues
MSTKMQADRIADATGTDEGAVASGKSIKATYVYEAPVRLWHWVNALAIVVLAVTGFFIGSPPATRPGEASANFLMGYIRF
AHFVAAYIFAIGMLGRIYWATAGNHHSRELFSVPVFTRAYWQEVISMLRWYAFLSARPSRYVGHNPLARFAMFFIFFLSS
VFMILTGFAMYGEGAQMGSWQERMFGWVIPLLGQSQDVHTWHHLGMWFIVVFVIVHVYAAIREDIMGRQSVVSTMVSGYR
TFKD
>Mature_243_residues
STKMQADRIADATGTDEGAVASGKSIKATYVYEAPVRLWHWVNALAIVVLAVTGFFIGSPPATRPGEASANFLMGYIRFA
HFVAAYIFAIGMLGRIYWATAGNHHSRELFSVPVFTRAYWQEVISMLRWYAFLSARPSRYVGHNPLARFAMFFIFFLSSV
FMILTGFAMYGEGAQMGSWQERMFGWVIPLLGQSQDVHTWHHLGMWFIVVFVIVHVYAAIREDIMGRQSVVSTMVSGYRT
FKD

Specific function: Probable b-type cytochrome

COG id: COG1969

COG function: function code C; Ni,Fe-hydrogenase I cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupC/hyaC/hydC family

Homologues:

Organism=Escherichia coli, GI1787208, Length=225, Percent_Identity=51.5555555555556, Blast_Score=226, Evalue=1e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CYBH_CUPNH (P31898)

Other databases:

- EMBL:   M96433
- EMBL:   AY305378
- PIR:   C43255
- RefSeq:   NP_942645.1
- ProteinModelPortal:   P31898
- GeneID:   2656806
- GenomeReviews:   AY305378_GR
- KEGG:   reh:PHG003
- HOGENOM:   HBG484117
- OMA:   YMAIFNA
- PhylomeDB:   P31898
- ProtClustDB:   CLSK923790
- BioCyc:   MetaCyc:MONOMER-12646
- BioCyc:   REUT381666:PHG003-MONOMER
- GO:   GO:0006810
- InterPro:   IPR005797
- InterPro:   IPR016174
- InterPro:   IPR000516
- PRINTS:   PR00161
- TIGRFAMs:   TIGR02125

Pfam domain/function: PF00033 Cytochrom_B_N; SSF81342 Transmembr_di-haem_cytochrome

EC number: NA

Molecular weight: Translated: 27581; Mature: 27450

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS00882 NI_HGENASE_CYTB_1; PS00883 NI_HGENASE_CYTB_2

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb5ac540)-; HASH(0xb655dc4)-; HASH(0xb655f98)-; HASH(0xb656010)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCH
>Mature Secondary Structure 
STKMQADRIADATGTDEGAVASGKSIKATYVYEAPVRLWHWVNALAIVVLAVTGFFIGS
CCCCCHHHHHCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
PPATRPGEASANFLMGYIRFAHFVAAYIFAIGMLGRIYWATAGNHHSRELFSVPVFTRAY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHHHHHH
WQEVISMLRWYAFLSARPSRYVGHNPLARFAMFFIFFLSSVFMILTGFAMYGEGAQMGSW
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
QERMFGWVIPLLGQSQDVHTWHHLGMWFIVVFVIVHVYAAIREDIMGRQSVVSTMVSGYR
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFKD
HCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Reduced ferredoxin; 2 H+ [C]

Specific reaction: Reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2 [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1383192; 12948488