| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is 37681315
Identifier: 37681315
GI number: 37681315
Start: 3213225
End: 3215072
Strand: Direct
Name: 37681315
Synonym: VV3131
Alternate gene names: NA
Gene position: 3213225-3215072 (Clockwise)
Preceding gene: 37681311
Following gene: 37681316
Centisome position: 95.79
GC content: 50.6
Gene sequence:
>1848_bases TTGCTGGTTTTGGACGCTGCCATGCCTGATAAATTTAATATGCAATCTCCCCCGTTTGATCGCTTGAGCGAGGGGCAACA ACACCTTTTACGTTCTTCACTTGATGTGGCCTATTTTCGCACTAAAGATGTGGTGCTCGCCGCGGGGCAACCGTCACCGC ATCTGCATATCTTAATCAAAGGCGCGGTTGAAGAACGCTCCGCCAACCAGCAAGAAGTGTTTGCTCACTACGCCAATGAC GACATGTTTGATGTGCGCGCCTTGTTCGAGCCAACCGTACGTCATCAATATGTCGCGCTCGAAGATACCTTAAGCTATTT GCTGCCCAAGGCCATTTTTCTCGAGCTATACAATGAAAACGGCCAATTCGCCGCTTATTTTGATAACAACCTCGCCAAGC GCCAAGAGCTGATAGAGGCGGCGCAGCAGCAACAAAATCTTGCTGAGTTCATCCTCACCAAAGTTGATAAAGCCATCTAT CATCCACCGAAGATTTTGTCGCCTGAGATGCCGATCAATCAGGTCACGCGCACACTTAAAGAGAACGGTATCGATGCCGC CTTGGTACGCCTCCATGACGACGATGGGCGGTTACTCAACCATCCCAATGCACACCCTTATGCGATTGTCACCCGCACCA ATATGCTCCACTCGGTGATGCTCGATGATAAGCCGCTCGACACTCCAGTGGGCGACATTGCCACCTTCCCCGTCTTCCAC GTCGATGACGGTGATTTTCTCTTTAATGCGATGATCACCATGACGCGCAATCGTATGAAGCGCCTCATGGTGTGCGATGG TCATCAAGCCGTGGGCATGTTGGACATGACGCAAATTCTCAGCGCCTTCTCCACCCATTCCCACGTGCTCACTTTGAGCA TCGCGCGCGCCTCCAGTGTTGAAGAGCTGGCCTTAGCGTCGAATCGCCAGCGTCAGTTAGTGGAAAGTTTGCTGAAAAAC GGCATTCGCACTCGCTTCATCATGGAGCTGATTTCTGCCGTCAATGAACAGATCATCGAGAAAGCCTTTGAGTTGGTTGT TCCACCCGCCCTTCACGATCACTGTTGTTTGATCGTTTTAGGCTCAGAAGGTCGTGGGGAACAAATCCTCAAAACCGACC AAGACAACGCGCTGATCATCAAAGATGGTTTGGAATGGCAACAAAGCGGCGTGGTGATGCAACAACTGACACACACCTTG CAGCAACTTGGCTATCCGCTCTGTCCGGGCAATGTGATGGTCAATAACCCTAAGTGGGTCAAAAGTCAGAGTGATTGGCG CAAAACCCTCACCGCATGGGTACGCAGTGCCAAACCAGAAACGGTGATGGATTTAGCGATTTTTGCCGATGCGCATGCCG TTGCGGGCAATAAGGCATTGCTTGAGCCTGTGAAACAGCACCTCTCCGAGTTGATGGCGGATCAAGAACTGATTTTGACC GAGTTCACTCGGCCTGCATTGAACTTTTCAGTTCCCCTCACCCTTTTTGGCAACGTCAAGGCCGACAAAAGCGGCCTCGA CATCAAACAAGGCGGCATCTTTCCTATCGTGCACGGCATTCGAGCCCTGAGCTTGGAATACGCGCTACATGACAACAACA CCTTCGACCGCATTGAGGGGTTAGTGGCACGTAACGTGTTGGAAAAAAGCACGGCCGCAAACCTAAGCGAAGCACTCAAG TTGTTTTTTAAATTGCGCCTAGCACAGCAACTGACAGAGCAGCACAGTAATAACAAACTCAACTTAAAACTGCTGGATCG CACGGAGCGAGATTTACTGCGCCACAGTTTGCACGTGGTGAAAAAGTTCAAACAGTGGCTGGGTTATCACTACCAAATCA AAGATTAA
Upstream 100 bases:
>100_bases TCCGCGACAGATTGTTTCCTCTAATCGGCCTAATTGGAGTGAATTAGACCAAAGTCGTCTGGAGAGTCAGGAGAATTTTG TCAGACTTAGAGCATATGCC
Downstream 100 bases:
>100_bases CCAACGCAAAACATCGAATCACGACCAAAGGCTATACGGCTAAGGTCTTAATGAAATAGGAATGTGTATGAACTGGTTTC GGCGCAACTACTGGTACTAC
Product: signal-transduction protein
Products: NA
Alternate protein names: Signal-Transduction Protein; Nucleotidyltransferase; Signal Transduction Protein; Signal Transduction Protein With CBS Domains; Signal-Transduction Protein With CBS Domains; Nucleotidyltransferase Family; CBS Domain Protein; Signal Protein; Inosine-5-Monophosphate Dehydrogenase; Nucleotidyltransferase Domain Family Protein; DNA Polymerase III Subunit Epsilon; CBS Signal-Transduction Protein; Cyclic-Nucleotide Signal Transduction Protein; Multidomain-Containing Protein; Cyclic Nucleotide-Regulated Nucleotidyltransferase; Methyl-Accepting Chemotaxis Protein A; Nucleotidyltransferases
Number of amino acids: Translated: 615; Mature: 615
Protein sequence:
>615_residues MLVLDAAMPDKFNMQSPPFDRLSEGQQHLLRSSLDVAYFRTKDVVLAAGQPSPHLHILIKGAVEERSANQQEVFAHYAND DMFDVRALFEPTVRHQYVALEDTLSYLLPKAIFLELYNENGQFAAYFDNNLAKRQELIEAAQQQQNLAEFILTKVDKAIY HPPKILSPEMPINQVTRTLKENGIDAALVRLHDDDGRLLNHPNAHPYAIVTRTNMLHSVMLDDKPLDTPVGDIATFPVFH VDDGDFLFNAMITMTRNRMKRLMVCDGHQAVGMLDMTQILSAFSTHSHVLTLSIARASSVEELALASNRQRQLVESLLKN GIRTRFIMELISAVNEQIIEKAFELVVPPALHDHCCLIVLGSEGRGEQILKTDQDNALIIKDGLEWQQSGVVMQQLTHTL QQLGYPLCPGNVMVNNPKWVKSQSDWRKTLTAWVRSAKPETVMDLAIFADAHAVAGNKALLEPVKQHLSELMADQELILT EFTRPALNFSVPLTLFGNVKADKSGLDIKQGGIFPIVHGIRALSLEYALHDNNTFDRIEGLVARNVLEKSTAANLSEALK LFFKLRLAQQLTEQHSNNKLNLKLLDRTERDLLRHSLHVVKKFKQWLGYHYQIKD
Sequences:
>Translated_615_residues MLVLDAAMPDKFNMQSPPFDRLSEGQQHLLRSSLDVAYFRTKDVVLAAGQPSPHLHILIKGAVEERSANQQEVFAHYAND DMFDVRALFEPTVRHQYVALEDTLSYLLPKAIFLELYNENGQFAAYFDNNLAKRQELIEAAQQQQNLAEFILTKVDKAIY HPPKILSPEMPINQVTRTLKENGIDAALVRLHDDDGRLLNHPNAHPYAIVTRTNMLHSVMLDDKPLDTPVGDIATFPVFH VDDGDFLFNAMITMTRNRMKRLMVCDGHQAVGMLDMTQILSAFSTHSHVLTLSIARASSVEELALASNRQRQLVESLLKN GIRTRFIMELISAVNEQIIEKAFELVVPPALHDHCCLIVLGSEGRGEQILKTDQDNALIIKDGLEWQQSGVVMQQLTHTL QQLGYPLCPGNVMVNNPKWVKSQSDWRKTLTAWVRSAKPETVMDLAIFADAHAVAGNKALLEPVKQHLSELMADQELILT EFTRPALNFSVPLTLFGNVKADKSGLDIKQGGIFPIVHGIRALSLEYALHDNNTFDRIEGLVARNVLEKSTAANLSEALK LFFKLRLAQQLTEQHSNNKLNLKLLDRTERDLLRHSLHVVKKFKQWLGYHYQIKD >Mature_615_residues MLVLDAAMPDKFNMQSPPFDRLSEGQQHLLRSSLDVAYFRTKDVVLAAGQPSPHLHILIKGAVEERSANQQEVFAHYAND DMFDVRALFEPTVRHQYVALEDTLSYLLPKAIFLELYNENGQFAAYFDNNLAKRQELIEAAQQQQNLAEFILTKVDKAIY HPPKILSPEMPINQVTRTLKENGIDAALVRLHDDDGRLLNHPNAHPYAIVTRTNMLHSVMLDDKPLDTPVGDIATFPVFH VDDGDFLFNAMITMTRNRMKRLMVCDGHQAVGMLDMTQILSAFSTHSHVLTLSIARASSVEELALASNRQRQLVESLLKN GIRTRFIMELISAVNEQIIEKAFELVVPPALHDHCCLIVLGSEGRGEQILKTDQDNALIIKDGLEWQQSGVVMQQLTHTL QQLGYPLCPGNVMVNNPKWVKSQSDWRKTLTAWVRSAKPETVMDLAIFADAHAVAGNKALLEPVKQHLSELMADQELILT EFTRPALNFSVPLTLFGNVKADKSGLDIKQGGIFPIVHGIRALSLEYALHDNNTFDRIEGLVARNVLEKSTAANLSEALK LFFKLRLAQQLTEQHSNNKLNLKLLDRTERDLLRHSLHVVKKFKQWLGYHYQIKD
Specific function: Unknown
COG id: COG2905
COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69466; Mature: 69466
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVLDAAMPDKFNMQSPPFDRLSEGQQHLLRSSLDVAYFRTKDVVLAAGQPSPHLHILIK CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCEEEECCCCCCCEEEEEE GAVEERSANQQEVFAHYANDDMFDVRALFEPTVRHQYVALEDTLSYLLPKAIFLELYNEN ECHHHCCCCHHHHHHHHCCCCHHHHHHHHCHHHHHHEEHHHHHHHHHHHHHHHHHHCCCC GQFAAYFDNNLAKRQELIEAAQQQQNLAEFILTKVDKAIYHPPKILSPEMPINQVTRTLK CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH ENGIDAALVRLHDDDGRLLNHPNAHPYAIVTRTNMLHSVMLDDKPLDTPVGDIATFPVFH HCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCHHCCCEEE VDDGDFLFNAMITMTRNRMKRLMVCDGHQAVGMLDMTQILSAFSTHSHVLTLSIARASSV ECCCHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEHHHCCH EELALASNRQRQLVESLLKNGIRTRFIMELISAVNEQIIEKAFELVVPPALHDHCCLIVL HHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE GSEGRGEQILKTDQDNALIIKDGLEWQQSGVVMQQLTHTLQQLGYPLCPGNVMVNNPKWV CCCCCCCCCEECCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCC KSQSDWRKTLTAWVRSAKPETVMDLAIFADAHAVAGNKALLEPVKQHLSELMADQELILT CCHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH EFTRPALNFSVPLTLFGNVKADKSGLDIKQGGIFPIVHGIRALSLEYALHDNNTFDRIEG HHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCHHHHHHH LVARNVLEKSTAANLSEALKLFFKLRLAQQLTEQHSNNKLNLKLLDRTERDLLRHSLHVV HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHH KKFKQWLGYHYQIKD HHHHHHCCCEEEECC >Mature Secondary Structure MLVLDAAMPDKFNMQSPPFDRLSEGQQHLLRSSLDVAYFRTKDVVLAAGQPSPHLHILIK CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCEEEECCCCCCCEEEEEE GAVEERSANQQEVFAHYANDDMFDVRALFEPTVRHQYVALEDTLSYLLPKAIFLELYNEN ECHHHCCCCHHHHHHHHCCCCHHHHHHHHCHHHHHHEEHHHHHHHHHHHHHHHHHHCCCC GQFAAYFDNNLAKRQELIEAAQQQQNLAEFILTKVDKAIYHPPKILSPEMPINQVTRTLK CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH ENGIDAALVRLHDDDGRLLNHPNAHPYAIVTRTNMLHSVMLDDKPLDTPVGDIATFPVFH HCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCHHCCCEEE VDDGDFLFNAMITMTRNRMKRLMVCDGHQAVGMLDMTQILSAFSTHSHVLTLSIARASSV ECCCHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEHHHCCH EELALASNRQRQLVESLLKNGIRTRFIMELISAVNEQIIEKAFELVVPPALHDHCCLIVL HHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE GSEGRGEQILKTDQDNALIIKDGLEWQQSGVVMQQLTHTLQQLGYPLCPGNVMVNNPKWV CCCCCCCCCEECCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCC KSQSDWRKTLTAWVRSAKPETVMDLAIFADAHAVAGNKALLEPVKQHLSELMADQELILT CCHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH EFTRPALNFSVPLTLFGNVKADKSGLDIKQGGIFPIVHGIRALSLEYALHDNNTFDRIEG HHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCHHHHHHH LVARNVLEKSTAANLSEALKLFFKLRLAQQLTEQHSNNKLNLKLLDRTERDLLRHSLHVV HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHH KKFKQWLGYHYQIKD HHHHHHCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA