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The map label for this gene is yggS [C]

Identifier: 37681058

GI number: 37681058

Start: 2928126

End: 2928836

Strand: Direct

Name: yggS [C]

Synonym: VV2873

Alternate gene names: 37681058

Gene position: 2928126-2928836 (Clockwise)

Preceding gene: 37681055

Following gene: 37681059

Centisome position: 87.29

GC content: 48.66

Gene sequence:

>711_bases
ATGAACAGTATTCAACAAAACATTGAACATATCACCACACAGATTCACGACTCTACGCAAAAGTGTGGACGAGCTCGAGA
CTCAGTGCAACTTTTAGCGGTCAGTAAAACCAAACCTGTCGAGGCGATTCTCGAAGCCTATCATGCAGGTCAAAGGGCTT
TTGGTGAGAACTACGTGCAAGAAGGCGTAGAAAAAGTCCGATTTTTTGCCGAGCAACACCCTGAGAAATCCATCGAGTGG
CATTTCATCGGTCCCATTCAATCGAATAAAAGTCGCTTAGTGGCGGAGCACTTTGCGTGGGTACATACCATTGATCGTGA
CAAAATCGCTCAACGTTTAAATGATCAACGCCCAGCCGAGCTCCCTCCGCTGCAAGTGCTGATCCAAGTGAACACCAGCG
GCGAAGCCTCTAAGTCAGGCGTATCCGGTGAGGAAATATTTGCACTTGCTGAGTTGATTTCTACCCTCCCGAACCTCACG
TTAAGAGGGTTGATGTCAATCCCTGAAAACGTCGATGACCACGTATCTCAGTTGGCTGCATTCCAACCGCTTGCTGAGCT
ACAACAACGCTTGCTTCAACGCTATCCAAGCGTGGACACTTTATCGATGGGCATGAGCGGCGACATGGATGCCGCCATCG
AATCAGGTTCAACCATGGTGCGTATTGGCACTGCCATTTTTGGCCATCGCGATTACAGCAATAAAGCGTAA

Upstream 100 bases:

>100_bases
GAGGCACACCCGCAGAAAGATGTAGATCTGATGCGTTATGTTTTACACTAAAATCCAGTAACTCAGTGATATCCATTATT
TTTCCCTTAAAAGACTTGCG

Downstream 100 bases:

>100_bases
CTCGGCGACTTTTACTTACTAGCGGAACAGAAATATGGAACATAAGAACATCGCTTTTATCGGTGCTGGCAATATGGTGA
GAGCCATTGTCTCTGGCTTG

Product: TIM-barrel fold family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MNSIQQNIEHITTQIHDSTQKCGRARDSVQLLAVSKTKPVEAILEAYHAGQRAFGENYVQEGVEKVRFFAEQHPEKSIEW
HFIGPIQSNKSRLVAEHFAWVHTIDRDKIAQRLNDQRPAELPPLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLT
LRGLMSIPENVDDHVSQLAAFQPLAELQQRLLQRYPSVDTLSMGMSGDMDAAIESGSTMVRIGTAIFGHRDYSNKA

Sequences:

>Translated_236_residues
MNSIQQNIEHITTQIHDSTQKCGRARDSVQLLAVSKTKPVEAILEAYHAGQRAFGENYVQEGVEKVRFFAEQHPEKSIEW
HFIGPIQSNKSRLVAEHFAWVHTIDRDKIAQRLNDQRPAELPPLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLT
LRGLMSIPENVDDHVSQLAAFQPLAELQQRLLQRYPSVDTLSMGMSGDMDAAIESGSTMVRIGTAIFGHRDYSNKA
>Mature_236_residues
MNSIQQNIEHITTQIHDSTQKCGRARDSVQLLAVSKTKPVEAILEAYHAGQRAFGENYVQEGVEKVRFFAEQHPEKSIEW
HFIGPIQSNKSRLVAEHFAWVHTIDRDKIAQRLNDQRPAELPPLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLT
LRGLMSIPENVDDHVSQLAAFQPLAELQQRLLQRYPSVDTLSMGMSGDMDAAIESGSTMVRIGTAIFGHRDYSNKA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=216, Percent_Identity=44.4444444444444, Blast_Score=143, Evalue=1e-34,
Organism=Escherichia coli, GI1789321, Length=235, Percent_Identity=59.5744680851064, Blast_Score=280, Evalue=4e-77,
Organism=Caenorhabditis elegans, GI17533025, Length=242, Percent_Identity=38.8429752066116, Blast_Score=133, Evalue=6e-32,
Organism=Saccharomyces cerevisiae, GI6319435, Length=218, Percent_Identity=39.9082568807339, Blast_Score=126, Evalue=2e-30,
Organism=Drosophila melanogaster, GI45550861, Length=216, Percent_Identity=44.4444444444444, Blast_Score=153, Evalue=8e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26243; Mature: 26243

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSIQQNIEHITTQIHDSTQKCGRARDSVQLLAVSKTKPVEAILEAYHAGQRAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHHCCHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
EGVEKVRFFAEQHPEKSIEWHFIGPIQSNKSRLVAEHFAWVHTIDRDKIAQRLNDQRPAE
HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
LPPLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLTLRGLMSIPENVDDHVSQLAA
CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH
FQPLAELQQRLLQRYPSVDTLSMGMSGDMDAAIESGSTMVRIGTAIFGHRDYSNKA
HHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHCCCEEEEEHHHHHCCCCCCCCC
>Mature Secondary Structure
MNSIQQNIEHITTQIHDSTQKCGRARDSVQLLAVSKTKPVEAILEAYHAGQRAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHHCCHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
EGVEKVRFFAEQHPEKSIEWHFIGPIQSNKSRLVAEHFAWVHTIDRDKIAQRLNDQRPAE
HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
LPPLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLTLRGLMSIPENVDDHVSQLAA
CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH
FQPLAELQQRLLQRYPSVDTLSMGMSGDMDAAIESGSTMVRIGTAIFGHRDYSNKA
HHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHCCCEEEEEHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]