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The map label for this gene is yfjD [H]

Identifier: 37680975

GI number: 37680975

Start: 2844753

End: 2845943

Strand: Direct

Name: yfjD [H]

Synonym: VV2791

Alternate gene names: 37680975

Gene position: 2844753-2845943 (Clockwise)

Preceding gene: 37680974

Following gene: 37680991

Centisome position: 84.8

GC content: 46.18

Gene sequence:

>1191_bases
ATGATGTCACTGAACCGATATCGCTTAAAGCACCTCGCCAATTCTGGGCACAAAGGGGCTAAGCGTGTCGAAAAGTTACT
GAGCCGCCCAGACCGATTAATTGGTTTGATTCTTATCGGTAACAACCTTGTCAATATTCTTGCCTCCGCCATTGCGACCA
TTCTCGGCATGCGCCTTTATGGTGATTTGGGTGTTGCAATTGCAACCGGTGCCCTTACCTTAGTCGTTTTGGTTTTTGCA
GAAGTCACCCCTAAAACCGTGGCCGCACTCTATCCTGAACGAGTTTCATACGCGAGCAGCATTTTGCTGGTGGTTTTGAT
GAAACTGCTTTCGCCTTTGGTGATGTTGGTGAATTTTATTACCAATGGTTTCATTCGCTTACTTGGTTTGAAAGCACAAC
ACAACGGCGAAGACAATCTCAGCTCCGAAGAACTGCGTACCGTGGTAAACGAAGCGGGCAGCTTAATCCCCCAGCGACAC
CAAGATATGCTGGTTTCCATTTTGGACTTAGAACACGTCACGGTGAATGACATCATGATCCCGCGTAATGAGATTACCGG
CATTGATATTAATGACGATTGGAAATCCATTGTCCGTCAGCTGACTCACTCTCCTCATGGCCGCATTGTCTTGTATCGCG
ACAAAATCGACGAAGCCGTTGGTATGTTAAGGTTACGAGAAGCGTATCGCTTGATGCTTGAGAAGAATGAGTTCAACAAA
GAGACCTTGCTACGAGCGGCAGATGAGGTCTATTTCATTCCAGAAAGCACCCCACTCAATGTTCAGCTACTCAAGTTCCA
ACGCAATAAACAGCGCATCGGCCTAATTGTCGATGAATATGGCGATATTATCGGCCTAGTGACACTGGAAGACATTCTAG
AAGAGATCGTGGGTGAATTTACCACCTCGATTGCACCAAGCCTTTCAGATGAGATTACTCCGCAAGGCGACGGCAGTTTC
CTTATTGAAGGCAGTACCAACATCCGTGATATCAATAAAGGTTTGAAATGGAAACTGCCAACCGATGGTCCTAGAACGCT
CAATGGCTTAATATTGGAGCACTTAGAAGACATTCCAGAAAGCCACCTCAGTGTAAAAGTGGCCGGCCACGCGATGGAAA
TTGTGGAACTTGAAGAAAACCGAATTAAGTCGGTAAAAGTCTTTCCTAAGCGAAAACGCAAAACGACCTAA

Upstream 100 bases:

>100_bases
GAAAATTTGAGTTTTGGACGACATATCTACGGGTATCTTATTTGCGCTACTCGCGTGTCTTATCGTCATTTCAGGCTATT
TCTCTGGTTCAGAGACAGGG

Downstream 100 bases:

>100_bases
CGGCATTAGCCCGACTTTACACTAATGAATGAAAAGGCCCAGCGTGAACACTGGGCCTTTCTTTTTTTATGATGTTAGTG
CGCGATGGGTTAATCCACTT

Product: putative hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MMSLNRYRLKHLANSGHKGAKRVEKLLSRPDRLIGLILIGNNLVNILASAIATILGMRLYGDLGVAIATGALTLVVLVFA
EVTPKTVAALYPERVSYASSILLVVLMKLLSPLVMLVNFITNGFIRLLGLKAQHNGEDNLSSEELRTVVNEAGSLIPQRH
QDMLVSILDLEHVTVNDIMIPRNEITGIDINDDWKSIVRQLTHSPHGRIVLYRDKIDEAVGMLRLREAYRLMLEKNEFNK
ETLLRAADEVYFIPESTPLNVQLLKFQRNKQRIGLIVDEYGDIIGLVTLEDILEEIVGEFTTSIAPSLSDEITPQGDGSF
LIEGSTNIRDINKGLKWKLPTDGPRTLNGLILEHLEDIPESHLSVKVAGHAMEIVELEENRIKSVKVFPKRKRKTT

Sequences:

>Translated_396_residues
MMSLNRYRLKHLANSGHKGAKRVEKLLSRPDRLIGLILIGNNLVNILASAIATILGMRLYGDLGVAIATGALTLVVLVFA
EVTPKTVAALYPERVSYASSILLVVLMKLLSPLVMLVNFITNGFIRLLGLKAQHNGEDNLSSEELRTVVNEAGSLIPQRH
QDMLVSILDLEHVTVNDIMIPRNEITGIDINDDWKSIVRQLTHSPHGRIVLYRDKIDEAVGMLRLREAYRLMLEKNEFNK
ETLLRAADEVYFIPESTPLNVQLLKFQRNKQRIGLIVDEYGDIIGLVTLEDILEEIVGEFTTSIAPSLSDEITPQGDGSF
LIEGSTNIRDINKGLKWKLPTDGPRTLNGLILEHLEDIPESHLSVKVAGHAMEIVELEENRIKSVKVFPKRKRKTT
>Mature_396_residues
MMSLNRYRLKHLANSGHKGAKRVEKLLSRPDRLIGLILIGNNLVNILASAIATILGMRLYGDLGVAIATGALTLVVLVFA
EVTPKTVAALYPERVSYASSILLVVLMKLLSPLVMLVNFITNGFIRLLGLKAQHNGEDNLSSEELRTVVNEAGSLIPQRH
QDMLVSILDLEHVTVNDIMIPRNEITGIDINDDWKSIVRQLTHSPHGRIVLYRDKIDEAVGMLRLREAYRLMLEKNEFNK
ETLLRAADEVYFIPESTPLNVQLLKFQRNKQRIGLIVDEYGDIIGLVTLEDILEEIVGEFTTSIAPSLSDEITPQGDGSF
LIEGSTNIRDINKGLKWKLPTDGPRTLNGLILEHLEDIPESHLSVKVAGHAMEIVELEENRIKSVKVFPKRKRKTT

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=365, Percent_Identity=24.1095890410959, Blast_Score=102, Evalue=9e-22,
Organism=Escherichia coli, GI145693175, Length=389, Percent_Identity=64.7814910025707, Blast_Score=536, Evalue=1e-154,
Organism=Escherichia coli, GI1790664, Length=403, Percent_Identity=24.5657568238213, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI87082033, Length=279, Percent_Identity=27.2401433691756, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1786879, Length=268, Percent_Identity=25.3731343283582, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788119, Length=270, Percent_Identity=27.037037037037, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 44294; Mature: 44294

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSLNRYRLKHLANSGHKGAKRVEKLLSRPDRLIGLILIGNNLVNILASAIATILGMRLY
CCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHH
GDLGVAIATGALTLVVLVFAEVTPKTVAALYPERVSYASSILLVVLMKLLSPLVMLVNFI
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TNGFIRLLGLKAQHNGEDNLSSEELRTVVNEAGSLIPQRHQDMLVSILDLEHVTVNDIMI
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEECCEEE
PRNEITGIDINDDWKSIVRQLTHSPHGRIVLYRDKIDEAVGMLRLREAYRLMLEKNEFNK
CCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCH
ETLLRAADEVYFIPESTPLNVQLLKFQRNKQRIGLIVDEYGDIIGLVTLEDILEEIVGEF
HHHHHHCCCEEECCCCCCCCEEEEEECCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHH
TTSIAPSLSDEITPQGDGSFLIEGSTNIRDINKGLKWKLPTDGPRTLNGLILEHLEDIPE
HHHHCCCCCCCCCCCCCCCEEEECCCCHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCH
SHLSVKVAGHAMEIVELEENRIKSVKVFPKRKRKTT
HHCEEEECCCEEEEEEECHHHCCEEEECCCCCCCCC
>Mature Secondary Structure
MMSLNRYRLKHLANSGHKGAKRVEKLLSRPDRLIGLILIGNNLVNILASAIATILGMRLY
CCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHH
GDLGVAIATGALTLVVLVFAEVTPKTVAALYPERVSYASSILLVVLMKLLSPLVMLVNFI
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TNGFIRLLGLKAQHNGEDNLSSEELRTVVNEAGSLIPQRHQDMLVSILDLEHVTVNDIMI
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEECCEEE
PRNEITGIDINDDWKSIVRQLTHSPHGRIVLYRDKIDEAVGMLRLREAYRLMLEKNEFNK
CCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCH
ETLLRAADEVYFIPESTPLNVQLLKFQRNKQRIGLIVDEYGDIIGLVTLEDILEEIVGEF
HHHHHHCCCEEECCCCCCCCEEEEEECCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHH
TTSIAPSLSDEITPQGDGSFLIEGSTNIRDINKGLKWKLPTDGPRTLNGLILEHLEDIPE
HHHHCCCCCCCCCCCCCCCEEEECCCCHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCH
SHLSVKVAGHAMEIVELEENRIKSVKVFPKRKRKTT
HHCEEEECCCEEEEEEECHHHCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]