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The map label for this gene is ypjD [H]

Identifier: 37680974

GI number: 37680974

Start: 2843785

End: 2844579

Strand: Direct

Name: ypjD [H]

Synonym: VV2790

Alternate gene names: 37680974

Gene position: 2843785-2844579 (Clockwise)

Preceding gene: 37680968

Following gene: 37680975

Centisome position: 84.78

GC content: 44.53

Gene sequence:

>795_bases
ATGGACAGCATAATTGCCATTGGTGCCACGATTCTCTACGGATTAGCCATCGCCACGATCGTTCCGGGACTTGCACACCA
AACGGGGATAAAGGCCAAAACCGTTTTAATTAGTGCTTCTTTGGCACTGGTCTTTCACGCGTGGCTATTGAGCGATCTCA
TTTTTGAAGGGTATGGTCAAAATCTCAGTATTTTAAATGTCGCGTCGTTGATCAGCTTCATCATCTCCTTGGTGATGAGT
GCCGCGATGCTTAAAAACCGTTTATGGTTCTTATTGCCTGTCGTCTATAGCTTTGCCGCCATTAATCTCTCTGCTGCGAC
GTTTTTACCCAGCACTTTCATTAAGCATTTAGAGAATGACCCTAAGCTGTTAATCCATATTTCCTTGGCACTGTTTTCTT
ATGCCACGTTAACCATTGGTGCGCTATACGCGCTTCAATTGGCCTGGCTAGACCATAAACTGAAAGCGAAAAAATCATTA
GTCATTAATCCAAACCTACCGCCACTGTTAATGGTGGAAAGACAGCTGTTTAAAATCATTATGATCGGCAATCTACTGTT
AACGGCAACGTTGGCAACTGGGTTTGTTTTTGTTCACGATATGTTTGCGGAAGGAAAAGCGCATAAAGCGGTGCTGTCGT
TTATCGCTTGGTTGGTTTACTCCACGTTGCTGTGGGGGCATTATCAAAAAGGCTGGCGCGGGAAAAAAGTGACCTGGTTT
GCTGTCGCAGGGGCAACTTTATTAACCCTGGCCTATTTTGGTAGCCGCTTTGTAAAAGAGATCATACTGAGCTAA

Upstream 100 bases:

>100_bases
TTCAATATCTCAACTCTTATCATTGATCTCTATTCAACGTAGCCCAGAGCTCAGTTGCAAGGTATACTTGCCCCATTCTA
TTGACCAACTTTCAGGATAT

Downstream 100 bases:

>100_bases
ACCCATAATGTACTGTCATTTTTAGGACAGCTATAACGCGTAATAGCACTGTCATTTATCAGGATAACAAAAGGAAAATT
TGAGTTTTGGACGACATATC

Product: ABC-type uncharacterized transport system, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MDSIIAIGATILYGLAIATIVPGLAHQTGIKAKTVLISASLALVFHAWLLSDLIFEGYGQNLSILNVASLISFIISLVMS
AAMLKNRLWFLLPVVYSFAAINLSAATFLPSTFIKHLENDPKLLIHISLALFSYATLTIGALYALQLAWLDHKLKAKKSL
VINPNLPPLLMVERQLFKIIMIGNLLLTATLATGFVFVHDMFAEGKAHKAVLSFIAWLVYSTLLWGHYQKGWRGKKVTWF
AVAGATLLTLAYFGSRFVKEIILS

Sequences:

>Translated_264_residues
MDSIIAIGATILYGLAIATIVPGLAHQTGIKAKTVLISASLALVFHAWLLSDLIFEGYGQNLSILNVASLISFIISLVMS
AAMLKNRLWFLLPVVYSFAAINLSAATFLPSTFIKHLENDPKLLIHISLALFSYATLTIGALYALQLAWLDHKLKAKKSL
VINPNLPPLLMVERQLFKIIMIGNLLLTATLATGFVFVHDMFAEGKAHKAVLSFIAWLVYSTLLWGHYQKGWRGKKVTWF
AVAGATLLTLAYFGSRFVKEIILS
>Mature_264_residues
MDSIIAIGATILYGLAIATIVPGLAHQTGIKAKTVLISASLALVFHAWLLSDLIFEGYGQNLSILNVASLISFIISLVMS
AAMLKNRLWFLLPVVYSFAAINLSAATFLPSTFIKHLENDPKLLIHISLALFSYATLTIGALYALQLAWLDHKLKAKKSL
VINPNLPPLLMVERQLFKIIMIGNLLLTATLATGFVFVHDMFAEGKAHKAVLSFIAWLVYSTLLWGHYQKGWRGKKVTWF
AVAGATLLTLAYFGSRFVKEIILS

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=261, Percent_Identity=53.2567049808429, Blast_Score=259, Evalue=2e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 29031; Mature: 29031

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSIIAIGATILYGLAIATIVPGLAHQTGIKAKTVLISASLALVFHAWLLSDLIFEGYGQ
CCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NLSILNVASLISFIISLVMSAAMLKNRLWFLLPVVYSFAAINLSAATFLPSTFIKHLEND
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PKLLIHISLALFSYATLTIGALYALQLAWLDHKLKAKKSLVINPNLPPLLMVERQLFKII
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
MIGNLLLTATLATGFVFVHDMFAEGKAHKAVLSFIAWLVYSTLLWGHYQKGWRGKKVTWF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
AVAGATLLTLAYFGSRFVKEIILS
EHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDSIIAIGATILYGLAIATIVPGLAHQTGIKAKTVLISASLALVFHAWLLSDLIFEGYGQ
CCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NLSILNVASLISFIISLVMSAAMLKNRLWFLLPVVYSFAAINLSAATFLPSTFIKHLEND
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PKLLIHISLALFSYATLTIGALYALQLAWLDHKLKAKKSLVINPNLPPLLMVERQLFKII
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
MIGNLLLTATLATGFVFVHDMFAEGKAHKAVLSFIAWLVYSTLLWGHYQKGWRGKKVTWF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
AVAGATLLTLAYFGSRFVKEIILS
EHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]