Click here to switch to the map view.

The map label for this gene is ycjP [C]

Identifier: 37679278

GI number: 37679278

Start: 1097520

End: 1098377

Strand: Direct

Name: ycjP [C]

Synonym: VV1094

Alternate gene names: 37679278

Gene position: 1097520-1098377 (Clockwise)

Preceding gene: 37679277

Following gene: 37679279

Centisome position: 32.72

GC content: 48.14

Gene sequence:

>858_bases
ATGAACTCTTCAGTGAACATGGCCCGATGGTTTATTTACGGCGCATTGGTCTTTTTCTGCTTGGTCTATTTGATGCCGTT
GTTTGTCATGGTGATCACCTCGTTTAAAACCTTGCCAGACATTAAGGCCGGTAACTTAATGAGCTTGCCACAAGAGTGGG
TGTTTGACGCTTGGTACAAAGCGTGGAATGGCGCCTGTACTGGGGTGAAATGTGAAGGGGTAAAGGGCTACTTTTGGAAC
TCGTTTCAAATGGTGATCCCTGCCGTGGCCATTTCGACTTTGCTTGGGGCGTTCAATGGCTATGTCGTTACCAAATGGCA
ATTTCGTGGCTCTAACCTGTTTTTCAGCTTGTTGCTGTTTGGCTGCTTCATTCCTTTTCAAGTGATTTTGCTGCCGATGG
CCGCGGTGCTTGGCAAGCTCGGTTTGGCCAATACCACCACCGGCTTGGTACTGGTGCATGTTATCTACGGCATGGCGTTT
ACCACACTGTTTTTCCGTAACTTTTACATCAGTGTGCCTGATGAGTTGATCAAAGCTGCCAAGCTCGATGGCGCAGGATT
TTTTACCATCTTCTTCAAAATCCTTCTGCCTATTTCAACCCCCATCATTATGGTGACGGTGATTTGGCAGTTTACTGCGA
TTTGGAATGACTTCCTGTTTGGCGTGGTGTATTCCGGCTCGGAAACCCAACCGATCACGGTGGCGCTGAATAACTTGGTC
AACACCAGTACTGGGGTGAAAGAGTACAACGTGGACATGGCAGCGGCGATCATTGCGGCGTTACCAACGCTGTTGGTGTA
TGTGTTGGCGGGTAAATATTTTGTACGCGGGTTAACTGCGGGATCAGTAAAAGGATAA

Upstream 100 bases:

>100_bases
GGCAAATCGGTTTAGGTGCCGCCAGTGCGATGATGATGTTAGGGGGCATTCTGGCCATCTTGGTGCCGTATCTTTATTCC
GAGCTTAGGGAGAAGCGCGC

Downstream 100 bases:

>100_bases
GTAACATGGCAACTCTAGAACTCAAACAGATCCGCAAAACCTACCCAAAAGCGGACCAAGAAACCTTAAAAGGTATTGAT
ATCAGCATCGACTCTGGTGA

Product: ABC-type sugar transport system, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MNSSVNMARWFIYGALVFFCLVYLMPLFVMVITSFKTLPDIKAGNLMSLPQEWVFDAWYKAWNGACTGVKCEGVKGYFWN
SFQMVIPAVAISTLLGAFNGYVVTKWQFRGSNLFFSLLLFGCFIPFQVILLPMAAVLGKLGLANTTTGLVLVHVIYGMAF
TTLFFRNFYISVPDELIKAAKLDGAGFFTIFFKILLPISTPIIMVTVIWQFTAIWNDFLFGVVYSGSETQPITVALNNLV
NTSTGVKEYNVDMAAAIIAALPTLLVYVLAGKYFVRGLTAGSVKG

Sequences:

>Translated_285_residues
MNSSVNMARWFIYGALVFFCLVYLMPLFVMVITSFKTLPDIKAGNLMSLPQEWVFDAWYKAWNGACTGVKCEGVKGYFWN
SFQMVIPAVAISTLLGAFNGYVVTKWQFRGSNLFFSLLLFGCFIPFQVILLPMAAVLGKLGLANTTTGLVLVHVIYGMAF
TTLFFRNFYISVPDELIKAAKLDGAGFFTIFFKILLPISTPIIMVTVIWQFTAIWNDFLFGVVYSGSETQPITVALNNLV
NTSTGVKEYNVDMAAAIIAALPTLLVYVLAGKYFVRGLTAGSVKG
>Mature_285_residues
MNSSVNMARWFIYGALVFFCLVYLMPLFVMVITSFKTLPDIKAGNLMSLPQEWVFDAWYKAWNGACTGVKCEGVKGYFWN
SFQMVIPAVAISTLLGAFNGYVVTKWQFRGSNLFFSLLLFGCFIPFQVILLPMAAVLGKLGLANTTTGLVLVHVIYGMAF
TTLFFRNFYISVPDELIKAAKLDGAGFFTIFFKILLPISTPIIMVTVIWQFTAIWNDFLFGVVYSGSETQPITVALNNLV
NTSTGVKEYNVDMAAAIIAALPTLLVYVLAGKYFVRGLTAGSVKG

Specific function: Probably part of a binding-protein-dependent transport system PH1214/15/16. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=285, Percent_Identity=25.9649122807018, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789860, Length=274, Percent_Identity=25.1824817518248, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790464, Length=308, Percent_Identity=28.2467532467532, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31502; Mature: 31502

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSVNMARWFIYGALVFFCLVYLMPLFVMVITSFKTLPDIKAGNLMSLPQEWVFDAWYK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
AWNGACTGVKCEGVKGYFWNSFQMVIPAVAISTLLGAFNGYVVTKWQFRGSNLFFSLLLF
HHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHH
GCFIPFQVILLPMAAVLGKLGLANTTTGLVLVHVIYGMAFTTLFFRNFYISVPDELIKAA
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
KLDGAGFFTIFFKILLPISTPIIMVTVIWQFTAIWNDFLFGVVYSGSETQPITVALNNLV
HCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHEEHHHHH
NTSTGVKEYNVDMAAAIIAALPTLLVYVLAGKYFVRGLTAGSVKG
CCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNSSVNMARWFIYGALVFFCLVYLMPLFVMVITSFKTLPDIKAGNLMSLPQEWVFDAWYK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
AWNGACTGVKCEGVKGYFWNSFQMVIPAVAISTLLGAFNGYVVTKWQFRGSNLFFSLLLF
HHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHH
GCFIPFQVILLPMAAVLGKLGLANTTTGLVLVHVIYGMAFTTLFFRNFYISVPDELIKAA
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
KLDGAGFFTIFFKILLPISTPIIMVTVIWQFTAIWNDFLFGVVYSGSETQPITVALNNLV
HCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHEEHHHHH
NTSTGVKEYNVDMAAAIIAALPTLLVYVLAGKYFVRGLTAGSVKG
CCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]