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The map label for this gene is yabJ [H]

Identifier: 37679206

GI number: 37679206

Start: 1020381

End: 1020764

Strand: Direct

Name: yabJ [H]

Synonym: VV1022

Alternate gene names: 37679206

Gene position: 1020381-1020764 (Clockwise)

Preceding gene: 37679205

Following gene: 37679207

Centisome position: 30.42

GC content: 47.4

Gene sequence:

>384_bases
GTGAAAGAAATTATATCCACACCAGCAGCCCCTGCGGCCATTGGCCCATATTCGCAAGGAACCATTTATGGAGAGGTGGT
TTACACCTCAGGCCAGCTTCCATTAGTACCAGAAACAATGCAATTTGTTGAAGGTGGGATTAAGGAACAAGCAAAACAGT
CGCTGGATAACCTGAAAGCGGTATTGGAAGCCAGTGGTGCTGGGCTCGATAGCGTACTGAAAACCACTTGCTTTCTTTCC
GATATGGAAAACTTCGCTGCATTTAATGAGGTGTACACGGAGGTGTTTGGTACTGAGAATGCACCAGCGCGCTCTTGCGT
CGAAGCGGCACGACTGCCAAAAGACGCGTTAGTTGAAATTGAAGCCATTGCCTACAAAAAGTAA

Upstream 100 bases:

>100_bases
ACGACACAGATATCAGAAAGCTTGGGGATCAGTCGCCAAGCTATTTATAAATTTATTCGAGAATTTAAATCAGAATAGTT
CGTTAATTAAGGAGTTTAAC

Downstream 100 bases:

>100_bases
CGGCCATCCGGAAACCATGAGCATCAATAGGAGACTCTCATGAGCTTATCATTTATCGCATTAAGCGTATTGTTCTTCGG
GTTCTACGCGTTACTTGCGA

Product: putative translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MKEIISTPAAPAAIGPYSQGTIYGEVVYTSGQLPLVPETMQFVEGGIKEQAKQSLDNLKAVLEASGAGLDSVLKTTCFLS
DMENFAAFNEVYTEVFGTENAPARSCVEAARLPKDALVEIEAIAYKK

Sequences:

>Translated_127_residues
MKEIISTPAAPAAIGPYSQGTIYGEVVYTSGQLPLVPETMQFVEGGIKEQAKQSLDNLKAVLEASGAGLDSVLKTTCFLS
DMENFAAFNEVYTEVFGTENAPARSCVEAARLPKDALVEIEAIAYKK
>Mature_127_residues
MKEIISTPAAPAAIGPYSQGTIYGEVVYTSGQLPLVPETMQFVEGGIKEQAKQSLDNLKAVLEASGAGLDSVLKTTCFLS
DMENFAAFNEVYTEVFGTENAPARSCVEAARLPKDALVEIEAIAYKK

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=126, Percent_Identity=42.8571428571429, Blast_Score=115, Evalue=8e-27,
Organism=Escherichia coli, GI87082396, Length=129, Percent_Identity=50.3875968992248, Blast_Score=130, Evalue=4e-32,
Organism=Escherichia coli, GI87082213, Length=128, Percent_Identity=47.65625, Blast_Score=127, Evalue=2e-31,
Organism=Escherichia coli, GI1787245, Length=124, Percent_Identity=33.0645161290323, Blast_Score=77, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI25148896, Length=123, Percent_Identity=49.5934959349593, Blast_Score=109, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI71982075, Length=123, Percent_Identity=49.5934959349593, Blast_Score=108, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI71982068, Length=123, Percent_Identity=49.5934959349593, Blast_Score=108, Evalue=6e-25,
Organism=Saccharomyces cerevisiae, GI6322138, Length=123, Percent_Identity=44.7154471544715, Blast_Score=105, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6320899, Length=104, Percent_Identity=45.1923076923077, Blast_Score=96, Evalue=2e-21,
Organism=Drosophila melanogaster, GI19921376, Length=124, Percent_Identity=49.1935483870968, Blast_Score=123, Evalue=3e-29,
Organism=Drosophila melanogaster, GI85726382, Length=118, Percent_Identity=37.2881355932203, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13566; Mature: 13566

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEIISTPAAPAAIGPYSQGTIYGEVVYTSGQLPLVPETMQFVEGGIKEQAKQSLDNLKA
CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH
VLEASGAGLDSVLKTTCFLSDMENFAAFNEVYTEVFGTENAPARSCVEAARLPKDALVEI
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
EAIAYKK
HHHHCCC
>Mature Secondary Structure
MKEIISTPAAPAAIGPYSQGTIYGEVVYTSGQLPLVPETMQFVEGGIKEQAKQSLDNLKA
CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH
VLEASGAGLDSVLKTTCFLSDMENFAAFNEVYTEVFGTENAPARSCVEAARLPKDALVEI
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
EAIAYKK
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]