| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is pgm [H]
Identifier: 37679204
GI number: 37679204
Start: 1017622
End: 1019280
Strand: Direct
Name: pgm [H]
Synonym: VV1020
Alternate gene names: 37679204
Gene position: 1017622-1019280 (Clockwise)
Preceding gene: 37679203
Following gene: 37679205
Centisome position: 30.34
GC content: 47.98
Gene sequence:
>1659_bases ATGTCATTAATGGCTATGCACCCTCGTGCAGGGCAGAAAGCTCTGCAAGAAGATCTTCACAATATCCCAGCACTCGTTGC TAATTATTTCCTCCTTCAACCCGATCCAACAAACCCAGCACACAAAGTCGAGTTTGGTACGTCAGGGCATCGTGGTTGTG CGGATAAATCCACTTTTAACGAACATCATATTTTAGCGATTGCTCAAGCGGTGGCTGAAGTACGTGCAGAGCAAGGGACA ACGGGTCCTCTTTTTGTGGGTAAAGATACGCATGCGTTGTCTGAGCCAGCGTTTTCTACCGTTGTTGAAGTGCTGATTGC CAATGGCGTGACCGTGATTGTACAAGAACAAAATGGCTATACCCCAACTCCGGGTATTTCTCATGCGATCCTGACATACA ACTTACAACACGAAGAAAAAGCAGACGGTATTGTGATCACTCCGTCTCATAACCCACCACAAGATGGCGGTATCAAATAC AATCCGACTCATGGTGGCCCCGCTGAAGGCGAGCTAACACAGCGAATTGAGGATCGTGCAAACGTACTCATCGCAGAGGG GTTGCAAGGTGTTAAGCGTATGCCTTTGGCGCAAGCAAAAGCGTCATCGCTGTTTGTAGAGCAAGATCTGGTCAAACCTT ATGTCGATGACTTGGTGAATGTGATCGATATGGCTGCCATCCAAAAAGCAGGCCTGAAATTGGGTGTCGATCCTCTTGGC GGCAGTGGCATTGATTATTGGCGTCAGATTGGTACAGCATACAATTTAGATCTTACTTTAGTGAGTGAAGCCATTGACCC TTCTTTCCAGTTTATGTCATTGGATAAAGATGGTGTGGTGCGTATGGACTGCTCTTCTCCCTACGCAATGGCTGGATTGC TGGCGCTAAAAGATCAGTATGATCTCGCGTTTGGTAATGACCCAGATTACGATCGCCATGGTATTGTCACGCCAACAAAA GGCTTGATGAATCCGAACCACTTCTTAGCTGTTTGTATTGATTATCTATACCGTCATCGTCAAGGTTGGGCTGCGGATGT GGCAGTGGGTAAAACCCTAGTTTCTAGCGCCATGATTGACCGAGTGGTGGCCGATCTTGGCCGTGAGCTATGTGAAGTAC CGGTTGGCTTTAAATGGTTTGTGGATGGGTTGTACAACGGTAAGTTTGGCTTTGGTGGCGAAGAGAGTGCGGGAGCCTCA TTCTTGCGCCAAGATGGTACACCATGGTCGACAGACAAAGATGGCATCATTCTTTGTTTACTGGCTGCGGAAATCACCGC AGTGACTGGTAAAAACCCGCAGCAATATTATGACGAGCTGGCGGCTAAACACGGTGAGTCTCAGTACAGCCGAATCCAAG CCGTTGCCAATGGTCCTCAGAAAGAGGTACTGAAGAAGCTCTCTGCTGAAATGGTGAAGGCGGAAACTTTAGCTGGTGAT GAGATTACCGCGAGACTGACCCATGCACCTGGTAATGGCGCAGCGATTGGTGGTCTAAAAGTGACAACTGCGAACGGTTG GTTTGCTGCGCGTCCATCGGGTACTGAAGATATCTATAAGATCTATTGTGAGAGCTTCAAAGGCGCAGAGCACCTCAAAC AAATTGAGTTGGAAGCGCAAGAGATTGTCAATCAAGTCTTTGCCGAAGCAGGTCTATAA
Upstream 100 bases:
>100_bases AGTAACAGGTTCAATTTAAGAAACCTGATAGAAGCCTCATAATGCGCAAGATTATGCCGATATTATGAGGCTTTTTTGTT TGAGTATATTTTAAGAAAGG
Downstream 100 bases:
>100_bases TTCTTTACGACTGATAATGGCTTTCCAATGATAATTAAAATCCCAAACACAGTGTTTGGGATTTTTTATTGTCGGAATAA AATTAAATTCATATGTCGAA
Product: phosphoglucomutase
Products: NA
Alternate protein names: PGM; Glucose phosphomutase [H]
Number of amino acids: Translated: 552; Mature: 551
Protein sequence:
>552_residues MSLMAMHPRAGQKALQEDLHNIPALVANYFLLQPDPTNPAHKVEFGTSGHRGCADKSTFNEHHILAIAQAVAEVRAEQGT TGPLFVGKDTHALSEPAFSTVVEVLIANGVTVIVQEQNGYTPTPGISHAILTYNLQHEEKADGIVITPSHNPPQDGGIKY NPTHGGPAEGELTQRIEDRANVLIAEGLQGVKRMPLAQAKASSLFVEQDLVKPYVDDLVNVIDMAAIQKAGLKLGVDPLG GSGIDYWRQIGTAYNLDLTLVSEAIDPSFQFMSLDKDGVVRMDCSSPYAMAGLLALKDQYDLAFGNDPDYDRHGIVTPTK GLMNPNHFLAVCIDYLYRHRQGWAADVAVGKTLVSSAMIDRVVADLGRELCEVPVGFKWFVDGLYNGKFGFGGEESAGAS FLRQDGTPWSTDKDGIILCLLAAEITAVTGKNPQQYYDELAAKHGESQYSRIQAVANGPQKEVLKKLSAEMVKAETLAGD EITARLTHAPGNGAAIGGLKVTTANGWFAARPSGTEDIYKIYCESFKGAEHLKQIELEAQEIVNQVFAEAGL
Sequences:
>Translated_552_residues MSLMAMHPRAGQKALQEDLHNIPALVANYFLLQPDPTNPAHKVEFGTSGHRGCADKSTFNEHHILAIAQAVAEVRAEQGT TGPLFVGKDTHALSEPAFSTVVEVLIANGVTVIVQEQNGYTPTPGISHAILTYNLQHEEKADGIVITPSHNPPQDGGIKY NPTHGGPAEGELTQRIEDRANVLIAEGLQGVKRMPLAQAKASSLFVEQDLVKPYVDDLVNVIDMAAIQKAGLKLGVDPLG GSGIDYWRQIGTAYNLDLTLVSEAIDPSFQFMSLDKDGVVRMDCSSPYAMAGLLALKDQYDLAFGNDPDYDRHGIVTPTK GLMNPNHFLAVCIDYLYRHRQGWAADVAVGKTLVSSAMIDRVVADLGRELCEVPVGFKWFVDGLYNGKFGFGGEESAGAS FLRQDGTPWSTDKDGIILCLLAAEITAVTGKNPQQYYDELAAKHGESQYSRIQAVANGPQKEVLKKLSAEMVKAETLAGD EITARLTHAPGNGAAIGGLKVTTANGWFAARPSGTEDIYKIYCESFKGAEHLKQIELEAQEIVNQVFAEAGL >Mature_551_residues SLMAMHPRAGQKALQEDLHNIPALVANYFLLQPDPTNPAHKVEFGTSGHRGCADKSTFNEHHILAIAQAVAEVRAEQGTT GPLFVGKDTHALSEPAFSTVVEVLIANGVTVIVQEQNGYTPTPGISHAILTYNLQHEEKADGIVITPSHNPPQDGGIKYN PTHGGPAEGELTQRIEDRANVLIAEGLQGVKRMPLAQAKASSLFVEQDLVKPYVDDLVNVIDMAAIQKAGLKLGVDPLGG SGIDYWRQIGTAYNLDLTLVSEAIDPSFQFMSLDKDGVVRMDCSSPYAMAGLLALKDQYDLAFGNDPDYDRHGIVTPTKG LMNPNHFLAVCIDYLYRHRQGWAADVAVGKTLVSSAMIDRVVADLGRELCEVPVGFKWFVDGLYNGKFGFGGEESAGASF LRQDGTPWSTDKDGIILCLLAAEITAVTGKNPQQYYDELAAKHGESQYSRIQAVANGPQKEVLKKLSAEMVKAETLAGDE ITARLTHAPGNGAAIGGLKVTTANGWFAARPSGTEDIYKIYCESFKGAEHLKQIELEAQEIVNQVFAEAGL
Specific function: This enzyme participates in both the breakdown and synthesis of glucose [H]
COG id: COG0033
COG function: function code G; Phosphoglucomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Homo sapiens, GI133922562, Length=440, Percent_Identity=25, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI290463102, Length=479, Percent_Identity=26.3048016701461, Blast_Score=97, Evalue=4e-20, Organism=Homo sapiens, GI21361621, Length=470, Percent_Identity=25.531914893617, Blast_Score=87, Evalue=5e-17, Organism=Escherichia coli, GI1786904, Length=547, Percent_Identity=70.2010968921389, Blast_Score=787, Evalue=0.0, Organism=Caenorhabditis elegans, GI17535441, Length=448, Percent_Identity=27.2321428571429, Blast_Score=89, Evalue=8e-18, Organism=Saccharomyces cerevisiae, GI6323752, Length=573, Percent_Identity=26.7015706806283, Blast_Score=114, Evalue=3e-26, Organism=Saccharomyces cerevisiae, GI6322722, Length=494, Percent_Identity=28.1376518218623, Blast_Score=102, Evalue=1e-22, Organism=Drosophila melanogaster, GI17864244, Length=469, Percent_Identity=26.0127931769723, Blast_Score=105, Evalue=8e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005852 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.2 [H]
Molecular weight: Translated: 59538; Mature: 59407
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: PS00710 PGM_PMM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLMAMHPRAGQKALQEDLHNIPALVANYFLLQPDPTNPAHKVEFGTSGHRGCADKSTFN CCCEECCCCCHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCC EHHILAIAQAVAEVRAEQGTTGPLFVGKDTHALSEPAFSTVVEVLIANGVTVIVQEQNGY CHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHCCHHHHHHHHHHHHCCCEEEEECCCCC TPTPGISHAILTYNLQHEEKADGIVITPSHNPPQDGGIKYNPTHGGPAEGELTQRIEDRA CCCCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHH NVLIAEGLQGVKRMPLAQAKASSLFVEQDLVKPYVDDLVNVIDMAAIQKAGLKLGVDPLG CEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCC GSGIDYWRQIGTAYNLDLTLVSEAIDPSFQFMSLDKDGVVRMDCSSPYAMAGLLALKDQY CCCHHHHHHHCCEECCCCEEHHHHCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHCCCC DLAFGNDPDYDRHGIVTPTKGLMNPNHFLAVCIDYLYRHRQGWAADVAVGKTLVSSAMID CEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH RVVADLGRELCEVPVGFKWFVDGLYNGKFGFGGEESAGASFLRQDGTPWSTDKDGIILCL HHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEE LAAEITAVTGKNPQQYYDELAAKHGESQYSRIQAVANGPQKEVLKKLSAEMVKAETLAGD EEHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC EITARLTHAPGNGAAIGGLKVTTANGWFAARPSGTEDIYKIYCESFKGAEHLKQIELEAQ CEEEEEEECCCCCCEECCEEEEECCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHH EIVNQVFAEAGL HHHHHHHHHCCC >Mature Secondary Structure SLMAMHPRAGQKALQEDLHNIPALVANYFLLQPDPTNPAHKVEFGTSGHRGCADKSTFN CCEECCCCCHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCC EHHILAIAQAVAEVRAEQGTTGPLFVGKDTHALSEPAFSTVVEVLIANGVTVIVQEQNGY CHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHCCHHHHHHHHHHHHCCCEEEEECCCCC TPTPGISHAILTYNLQHEEKADGIVITPSHNPPQDGGIKYNPTHGGPAEGELTQRIEDRA CCCCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHH NVLIAEGLQGVKRMPLAQAKASSLFVEQDLVKPYVDDLVNVIDMAAIQKAGLKLGVDPLG CEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCC GSGIDYWRQIGTAYNLDLTLVSEAIDPSFQFMSLDKDGVVRMDCSSPYAMAGLLALKDQY CCCHHHHHHHCCEECCCCEEHHHHCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHCCCC DLAFGNDPDYDRHGIVTPTKGLMNPNHFLAVCIDYLYRHRQGWAADVAVGKTLVSSAMID CEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH RVVADLGRELCEVPVGFKWFVDGLYNGKFGFGGEESAGASFLRQDGTPWSTDKDGIILCL HHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEE LAAEITAVTGKNPQQYYDELAAKHGESQYSRIQAVANGPQKEVLKKLSAEMVKAETLAGD EEHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC EITARLTHAPGNGAAIGGLKVTTANGWFAARPSGTEDIYKIYCESFKGAEHLKQIELEAQ CEEEEEEECCCCCCEECCEEEEECCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHH EIVNQVFAEAGL HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8083177; 8905232; 9278503; 8011018 [H]