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The map label for this gene is crl

Identifier: 37679041

GI number: 37679041

Start: 862610

End: 862999

Strand: Direct

Name: crl

Synonym: VV0857

Alternate gene names: 37679041

Gene position: 862610-862999 (Clockwise)

Preceding gene: 161486650

Following gene: 161486649

Centisome position: 25.71

GC content: 42.56

Gene sequence:

>390_bases
ATGTCAGAAGTGACGAACAACCCTACCCACAATCGTTTATTGGCAAAATTGCGAGCGATGGGACCTTACTTGAGAGACCC
TCAATCTAAGGAAGGGCTTTACTACTTTGATTGCTTGTCTGTTTGTATTGATGATCGAAAATCACCAGAGTTGCGCGAGT
TTTGGGGCTGGTGGATGGAGCTGGAAGCGACTGAGGGAGGCTTTACAGCAAACTATCATATTGGAAAATATGATGTTGAA
GGGAACTGGCTCGATTTGGCTATTCCTAAAAATGCACTTGAAGAAGTGAATAAAACTCAGAACTGTTTTCACCTCAAATT
AGTCAAAACCTTGGAAGAAAATTTTCAGCTAAGCGTGGCGTATCACGAGCAGTCTGTGGAATTTGTCTGA

Upstream 100 bases:

>100_bases
CTCCTAATTTAGTCAAGAGTGATATATGAGACTTAAAATTTAAGCTCATGATAAATAAAAATTATTGTCATTCTTAACAT
TGAAGAAAATGGAGATTCAC

Downstream 100 bases:

>100_bases
TTTCATCCTCTTGGAACTACCTAAATCAAAAAGGTGCGATTTTCGCACCTTTTCTGCTTGTGAATTCTTCATTTGATTGT
TAAAACATCTTCTCTATTTT

Product: DNA-binding transcriptional regulator Crl

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MSEVTNNPTHNRLLAKLRAMGPYLRDPQSKEGLYYFDCLSVCIDDRKSPELREFWGWWMELEATEGGFTANYHIGKYDVE
GNWLDLAIPKNALEEVNKTQNCFHLKLVKTLEENFQLSVAYHEQSVEFV

Sequences:

>Translated_129_residues
MSEVTNNPTHNRLLAKLRAMGPYLRDPQSKEGLYYFDCLSVCIDDRKSPELREFWGWWMELEATEGGFTANYHIGKYDVE
GNWLDLAIPKNALEEVNKTQNCFHLKLVKTLEENFQLSVAYHEQSVEFV
>Mature_128_residues
SEVTNNPTHNRLLAKLRAMGPYLRDPQSKEGLYYFDCLSVCIDDRKSPELREFWGWWMELEATEGGFTANYHIGKYDVEG
NWLDLAIPKNALEEVNKTQNCFHLKLVKTLEENFQLSVAYHEQSVEFV

Specific function: Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the crl family

Homologues:

Organism=Escherichia coli, GI1786435, Length=102, Percent_Identity=43.1372549019608, Blast_Score=100, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CRL_VIBVU (Q8DF92)

Other databases:

- EMBL:   AE016795
- RefSeq:   NP_759329.1
- GeneID:   1177288
- GenomeReviews:   AE016795_GR
- KEGG:   vvu:VV1_0327
- HOGENOM:   HBG644153
- OMA:   AIGPYLR
- ProtClustDB:   PRK10984
- BioCyc:   VVUL216895:VV1_0327-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- HAMAP:   MF_01178
- InterPro:   IPR009986

Pfam domain/function: PF07417 Crl

EC number: NA

Molecular weight: Translated: 15062; Mature: 14931

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEVTNNPTHNRLLAKLRAMGPYLRDPQSKEGLYYFDCLSVCIDDRKSPELREFWGWWME
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCHHHHCCEEEE
LEATEGGFTANYHIGKYDVEGNWLDLAIPKNALEEVNKTQNCFHLKLVKTLEENFQLSVA
EEECCCCEEEEEECEEEECCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEE
YHEQSVEFV
EECCCCCCC
>Mature Secondary Structure 
SEVTNNPTHNRLLAKLRAMGPYLRDPQSKEGLYYFDCLSVCIDDRKSPELREFWGWWME
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCHHHHCCEEEE
LEATEGGFTANYHIGKYDVEGNWLDLAIPKNALEEVNKTQNCFHLKLVKTLEENFQLSVA
EEECCCCEEEEEECEEEECCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEE
YHEQSVEFV
EECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA